Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 109.47290 * 2 1 4 4 C 1.42896 * 114.00378 * 180.02562 * 3 2 1 5 5 C 1.53509 * 114.17310 * 210.00057 * 4 3 2 6 6 N 1.47476 * 87.99816 * 220.35671 * 5 4 3 7 7 C 1.46899 * 111.00149 * 138.67339 * 6 5 4 8 8 C 1.53005 * 109.47193 * 164.32707 * 7 6 5 9 9 C 1.50701 * 115.54708 * 39.93726 * 8 7 6 10 10 H 1.08000 * 120.00009 * 274.11432 * 9 8 7 11 11 C 1.37876 * 120.00155 * 94.11874 * 9 8 7 12 12 N 1.31514 * 120.00004 * 174.24400 * 11 9 8 13 13 Si 1.86801 * 119.99974 * 354.24958 * 11 9 8 14 14 H 1.48497 * 109.47197 * 94.67301 * 13 11 9 15 15 H 1.48494 * 109.47107 * 214.67189 * 13 11 9 16 16 H 1.48498 * 109.46866 * 334.67311 * 13 11 9 17 17 C 1.52993 * 117.50060 * 254.22711 * 8 7 6 18 18 C 1.52997 * 117.49869 * 185.60192 * 8 7 6 19 19 C 1.47476 * 87.83691 * 26.97972 * 6 5 4 20 20 H 1.09000 * 109.46905 * 299.99949 * 1 2 3 21 21 H 1.08997 * 109.47075 * 59.99923 * 1 2 3 22 22 H 1.08993 * 109.47521 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46905 * 240.00051 * 2 1 3 24 24 H 1.08997 * 109.47075 * 120.00077 * 2 1 3 25 25 H 1.09000 * 113.37947 * 343.08147 * 4 3 2 26 26 H 1.09005 * 113.47434 * 105.56108 * 5 4 3 27 27 H 1.08996 * 113.47770 * 335.15388 * 5 4 3 28 28 H 1.08997 * 109.47280 * 284.32490 * 7 6 5 29 29 H 1.08996 * 109.47338 * 44.33139 * 7 6 5 30 30 H 0.97001 * 120.00060 * 179.97438 * 12 11 9 31 31 H 1.08998 * 117.50070 * 359.97438 * 17 8 7 32 32 H 1.09000 * 117.50056 * 145.02315 * 17 8 7 33 33 H 1.09003 * 117.50109 * 214.97993 * 18 8 7 34 34 H 1.08997 * 117.50182 * 0.02562 * 18 8 7 35 35 H 1.09001 * 113.47750 * 87.75978 * 19 6 5 36 36 H 1.08998 * 113.47731 * 218.16115 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9620 2.7187 0.6996 6 7 4.9589 2.8362 -0.3808 7 6 5.1185 4.2350 -0.8000 8 6 6.4034 4.3789 -1.6182 9 6 6.6920 3.2535 -2.5781 10 1 7.2139 2.3722 -2.2357 11 6 6.2899 3.3492 -3.8935 12 7 6.6393 2.4209 -4.7570 13 14 5.2488 4.7973 -4.4490 14 1 6.1297 5.8560 -5.0042 15 1 4.2945 4.3487 -5.4945 16 1 4.4948 5.3384 -3.2897 17 6 7.5978 5.0571 -0.9444 18 6 6.8190 5.7900 -2.0385 19 6 4.0094 2.1265 -1.2581 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9378 0.5400 0.2902 26 1 4.4020 2.5190 1.6767 27 1 3.2451 3.5394 0.7201 28 1 4.2647 4.5314 -1.4093 29 1 5.1754 4.8742 0.0810 30 1 6.3561 2.4879 -5.6824 31 1 7.4682 5.4013 0.0817 32 1 8.5928 4.6894 -1.1952 33 1 7.3016 5.9045 -3.0092 34 1 6.1773 6.6160 -1.7319 35 1 3.3045 2.7887 -1.7608 36 1 4.4898 1.4258 -1.9410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383087303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = 21.225944 kcal Electronic energy + Delta-G solvation = -16033.693215 eV Core-core repulsion = 13520.355913 eV Total energy + Delta-G solvation = -2513.337302 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75551 -37.21778 -36.11729 -31.97832 -31.20831 -28.77325 -25.80459 -25.10652 -23.44107 -22.66099 -21.56828 -19.54693 -18.90677 -16.99164 -16.03580 -15.60990 -15.19997 -14.87332 -14.26994 -13.91076 -13.50923 -13.21830 -12.64521 -12.49142 -12.27405 -12.17260 -12.11464 -11.45357 -11.14171 -11.03062 -10.74522 -10.68902 -10.32765 -10.18303 -9.91726 -9.51431 -9.12451 -8.87912 -8.57016 -8.42334 -8.01639 -6.01457 -3.99143 3.31652 3.41776 3.46013 3.77724 4.48859 4.64445 4.84377 5.05046 5.09911 5.14793 5.28340 5.34304 5.40020 5.50877 5.68451 5.81676 5.89574 5.90368 6.00914 6.02292 6.06826 6.19675 6.25735 6.39930 6.48861 6.54755 6.64349 6.78052 6.92069 7.16447 7.30352 7.46462 7.77652 7.87225 8.66271 9.07257 9.63357 11.10932 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.008288 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.864041 B = 3377.528108 C = 3851.632374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.379 6.379 4 C 0.051 3.949 5 C -0.010 4.010 6 N -0.433 5.433 7 C 0.060 3.940 8 C 0.014 3.986 9 C -0.460 4.460 10 H 0.080 0.920 11 C 0.073 3.927 12 N -0.902 5.902 13 Si 0.874 3.126 14 H -0.282 1.282 15 H -0.297 1.297 16 H -0.262 1.262 17 C -0.178 4.178 18 C -0.209 4.209 19 C 0.005 3.995 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -1.376 9.260 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.297 6.297 4 C -0.007 4.007 5 C -0.140 4.140 6 N -0.156 5.156 7 C -0.069 4.069 8 C 0.013 3.987 9 C -0.498 4.498 10 H 0.098 0.902 11 C -0.127 4.127 12 N -0.541 5.541 13 Si 0.703 3.297 14 H -0.208 1.208 15 H -0.224 1.224 16 H -0.186 1.186 17 C -0.215 4.215 18 C -0.246 4.246 19 C -0.124 4.124 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.539 -1.491 9.149 12.603 hybrid contribution -1.157 1.111 -0.671 1.739 sum -9.696 -0.381 8.478 12.886 Atomic orbital electron populations 1.21743 0.94194 1.01932 1.02927 1.22476 0.95200 0.84349 1.00089 1.87913 1.21170 1.26074 1.94590 1.23972 0.80113 0.98309 0.98309 1.24191 0.94612 0.96881 0.98273 1.68810 1.29863 1.13130 1.03786 1.22394 0.98646 0.88795 0.97042 1.19310 0.90805 0.91269 0.97353 1.20176 1.36311 1.01893 0.91404 0.90168 1.24947 0.95587 0.95754 0.96456 1.69902 1.45885 1.34790 1.03518 0.86964 0.80939 0.83405 0.78423 1.20809 1.22405 1.18626 1.22839 0.98140 1.05814 0.94712 1.22953 1.05494 0.96729 0.99457 1.24282 0.93434 0.98628 0.96074 0.92112 0.91918 0.91367 0.93186 0.93559 0.88514 0.90018 0.91568 0.94167 0.93275 0.92867 0.91277 0.89679 0.89552 0.91272 0.91603 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 2 C 0.06 0.68 6.50 37.16 0.24 0.92 16 3 O -0.38 -5.91 10.39 -35.23 -0.37 -6.28 16 4 C 0.05 0.83 4.66 -26.14 -0.12 0.71 16 5 C -0.01 -0.17 7.47 -7.56 -0.06 -0.23 16 6 N -0.43 -8.77 5.81 -244.49 -1.42 -10.20 16 7 C 0.06 1.27 4.93 -3.82 -0.02 1.25 16 8 C 0.01 0.33 1.23 -155.66 -0.19 0.13 16 9 C -0.46 -12.72 8.20 -34.44 -0.28 -13.00 16 10 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 11 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 12 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 13 Si 0.87 21.98 24.88 -169.99 -4.23 17.75 16 14 H -0.28 -7.02 7.09 56.52 0.40 -6.62 16 15 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 16 H -0.26 -6.29 5.55 56.52 0.31 -5.97 16 17 C -0.18 -3.77 9.88 -26.73 -0.26 -4.03 16 18 C -0.21 -4.59 7.40 -26.73 -0.20 -4.79 16 19 C 0.00 0.10 6.89 -7.49 -0.05 0.05 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 28 H 0.04 0.88 5.91 -51.93 -0.31 0.58 16 29 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 33 H 0.09 2.01 6.77 -51.93 -0.35 1.66 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.35 7.38 -51.93 -0.38 0.97 16 36 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -29.99 289.11 -7.68 -37.67 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.14 Total: 1.40 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.66 Total: -18.14 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.65 Total: -36.76 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.37 Total: -6.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.23 Total: 17.75 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.99 -7.68 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383087303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.898 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds