Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 109.47290 * 2 1 4 4 C 1.42896 * 114.00378 * 180.02562 * 3 2 1 5 5 C 1.53509 * 114.17310 * 210.00057 * 4 3 2 6 6 N 1.47476 * 87.99816 * 220.35671 * 5 4 3 7 7 C 1.46899 * 111.00149 * 138.67339 * 6 5 4 8 8 C 1.53005 * 109.47193 * 164.32707 * 7 6 5 9 9 C 1.50701 * 115.54708 * 39.93726 * 8 7 6 10 10 H 1.08000 * 120.00009 * 274.11432 * 9 8 7 11 11 C 1.37876 * 120.00155 * 94.11874 * 9 8 7 12 12 N 1.31514 * 120.00004 * 174.24400 * 11 9 8 13 13 Si 1.86801 * 119.99974 * 354.24958 * 11 9 8 14 14 H 1.48497 * 109.47197 * 94.67301 * 13 11 9 15 15 H 1.48494 * 109.47107 * 214.67189 * 13 11 9 16 16 H 1.48498 * 109.46866 * 334.67311 * 13 11 9 17 17 C 1.52993 * 117.50060 * 254.22711 * 8 7 6 18 18 C 1.52997 * 117.49869 * 185.60192 * 8 7 6 19 19 C 1.47476 * 87.83691 * 26.97972 * 6 5 4 20 20 H 1.09000 * 109.46905 * 299.99949 * 1 2 3 21 21 H 1.08997 * 109.47075 * 59.99923 * 1 2 3 22 22 H 1.08993 * 109.47521 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46905 * 240.00051 * 2 1 3 24 24 H 1.08997 * 109.47075 * 120.00077 * 2 1 3 25 25 H 1.09000 * 113.37947 * 343.08147 * 4 3 2 26 26 H 1.09005 * 113.47434 * 105.56108 * 5 4 3 27 27 H 1.08996 * 113.47770 * 335.15388 * 5 4 3 28 28 H 1.08997 * 109.47280 * 284.32490 * 7 6 5 29 29 H 1.08996 * 109.47338 * 44.33139 * 7 6 5 30 30 H 0.97001 * 120.00060 * 179.97438 * 12 11 9 31 31 H 1.08998 * 117.50070 * 359.97438 * 17 8 7 32 32 H 1.09000 * 117.50056 * 145.02315 * 17 8 7 33 33 H 1.09003 * 117.50109 * 214.97993 * 18 8 7 34 34 H 1.08997 * 117.50182 * 0.02562 * 18 8 7 35 35 H 1.09001 * 113.47750 * 87.75978 * 19 6 5 36 36 H 1.08998 * 113.47731 * 218.16115 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9620 2.7187 0.6996 6 7 4.9589 2.8362 -0.3808 7 6 5.1185 4.2350 -0.8000 8 6 6.4034 4.3789 -1.6182 9 6 6.6920 3.2535 -2.5781 10 1 7.2139 2.3722 -2.2357 11 6 6.2899 3.3492 -3.8935 12 7 6.6393 2.4209 -4.7570 13 14 5.2488 4.7973 -4.4490 14 1 6.1297 5.8560 -5.0042 15 1 4.2945 4.3487 -5.4945 16 1 4.4948 5.3384 -3.2897 17 6 7.5978 5.0571 -0.9444 18 6 6.8190 5.7900 -2.0385 19 6 4.0094 2.1265 -1.2581 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9378 0.5400 0.2902 26 1 4.4020 2.5190 1.6767 27 1 3.2451 3.5394 0.7201 28 1 4.2647 4.5314 -1.4093 29 1 5.1754 4.8742 0.0810 30 1 6.3561 2.4879 -5.6824 31 1 7.4682 5.4013 0.0817 32 1 8.5928 4.6894 -1.1952 33 1 7.3016 5.9045 -3.0092 34 1 6.1773 6.6160 -1.7319 35 1 3.3045 2.7887 -1.7608 36 1 4.4898 1.4258 -1.9410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383087303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = -0.409394 kcal Electronic energy + Delta-G solvation = -16034.631394 eV Core-core repulsion = 13520.355913 eV Total energy + Delta-G solvation = -2514.275481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18910 -38.71756 -37.58528 -34.15867 -32.21833 -30.22780 -27.77137 -26.69205 -24.93746 -23.64477 -23.29704 -20.94479 -20.80433 -18.50811 -17.77878 -16.90159 -16.65843 -16.63053 -15.80261 -15.39246 -15.01027 -14.74758 -14.52897 -14.02879 -13.70468 -13.43025 -13.16671 -13.05202 -12.88600 -12.53306 -12.13567 -12.06046 -12.00363 -11.77059 -11.64593 -11.42506 -10.80536 -10.61739 -10.35944 -10.22863 -9.63757 -8.23027 -6.23231 1.30703 1.34904 1.45745 2.37906 2.60576 3.10315 3.13857 3.43241 3.49791 3.96631 4.07493 4.20669 4.21254 4.32306 4.38368 4.45646 4.51324 4.52354 4.61477 4.70744 4.81102 4.85722 4.87921 4.92050 5.02869 5.05324 5.09046 5.26209 5.28648 5.47454 5.65990 5.79600 6.22960 6.30160 6.46759 6.83192 7.41891 8.93473 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.008288 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.864041 B = 3377.528108 C = 3851.632374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 O -0.391 6.391 4 C 0.070 3.930 5 C 0.000 4.000 6 N -0.458 5.458 7 C 0.067 3.933 8 C -0.018 4.018 9 C -0.447 4.447 10 H 0.031 0.969 11 C 0.020 3.980 12 N -0.953 5.953 13 Si 0.929 3.071 14 H -0.274 1.274 15 H -0.303 1.303 16 H -0.239 1.239 17 C -0.161 4.161 18 C -0.202 4.202 19 C -0.002 4.002 20 H 0.064 0.936 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.261 0.739 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 0.064 11.469 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.310 6.310 4 C 0.012 3.988 5 C -0.129 4.129 6 N -0.181 5.181 7 C -0.062 4.062 8 C -0.019 4.019 9 C -0.486 4.486 10 H 0.049 0.951 11 C -0.176 4.176 12 N -0.594 5.594 13 Si 0.755 3.245 14 H -0.200 1.200 15 H -0.231 1.231 16 H -0.162 1.162 17 C -0.198 4.198 18 C -0.240 4.240 19 C -0.132 4.132 20 H 0.083 0.917 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.964 -0.043 11.389 15.132 hybrid contribution -0.661 0.546 -1.318 1.572 sum -10.625 0.503 10.071 14.648 Atomic orbital electron populations 1.21756 0.92488 1.03479 1.02667 1.22770 0.96640 0.82907 1.00820 1.87897 1.20379 1.28288 1.94453 1.23760 0.80823 0.98843 0.95419 1.24181 0.93741 0.96933 0.98029 1.68721 1.31482 1.12796 1.05097 1.22272 0.96489 0.89841 0.97569 1.19337 0.93457 0.90853 0.98286 1.20207 1.34524 1.01578 0.92262 0.95102 1.25662 0.96948 0.98340 0.96630 1.70048 1.48148 1.37302 1.03908 0.86060 0.79499 0.80431 0.78471 1.20034 1.23083 1.16185 1.22870 0.96517 1.04108 0.96350 1.22982 1.05552 0.96367 0.99097 1.24213 0.93452 0.98446 0.97052 0.91667 0.92850 0.88951 0.93638 0.91659 0.87255 0.87562 0.90736 0.95149 0.90317 0.93034 0.87780 0.90937 0.91283 0.88156 0.92712 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.04 1.01 6.50 71.98 0.47 1.48 16 3 O -0.39 -11.54 10.39 -148.98 -1.55 -13.09 16 4 C 0.07 2.18 4.66 30.98 0.14 2.32 16 5 C 0.00 -0.01 7.47 83.57 0.62 0.62 16 6 N -0.46 -18.05 5.81 -927.76 -5.39 -23.45 16 7 C 0.07 2.68 4.93 86.31 0.43 3.11 16 8 C -0.02 -0.83 1.23 -52.93 -0.07 -0.90 16 9 C -0.45 -25.44 8.20 25.60 0.21 -25.23 16 10 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 11 C 0.02 1.18 5.46 84.65 0.46 1.64 16 12 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 13 Si 0.93 45.56 24.88 68.60 1.71 47.26 16 14 H -0.27 -13.06 7.09 99.48 0.71 -12.36 16 15 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 16 H -0.24 -10.72 5.55 99.48 0.55 -10.17 16 17 C -0.16 -6.43 9.88 30.59 0.30 -6.13 16 18 C -0.20 -8.34 7.40 30.59 0.23 -8.11 16 19 C 0.00 -0.08 6.89 83.61 0.58 0.49 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.11 3.09 7.88 -2.39 -0.02 3.07 16 26 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 27 H 0.07 2.15 7.91 -2.39 -0.02 2.13 16 28 H 0.03 1.26 5.91 -2.39 -0.01 1.25 16 29 H 0.08 2.67 7.81 -2.39 -0.02 2.65 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.10 3.44 8.08 -2.39 -0.02 3.42 16 32 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.07 3.08 6.77 -2.39 -0.02 3.07 16 34 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.05 2.28 7.38 -2.39 -0.02 2.26 16 36 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -66.63 289.11 0.05 -66.58 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.87 Total: 15.28 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.11 Total: -32.61 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -5.10 Total: -83.41 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.55 Total: -13.09 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.71 Total: 47.26 kcal Total: -66.63 0.05 -66.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383087303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.166 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds