Wall clock time and date at job start Mon Mar 30 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.85906 * 2 1 4 4 C 1.54630 * 110.97368 * 236.17212 * 2 1 3 5 5 C 1.51276 * 104.13568 * 216.86180 * 4 2 1 6 6 O 1.21282 * 124.94139 * 196.50739 * 5 4 2 7 7 N 1.34419 * 110.11513 * 16.65118 * 5 4 2 8 8 C 1.46499 * 124.35021 * 180.25303 * 7 5 4 9 9 C 1.53001 * 109.47073 * 269.69594 * 8 7 5 10 10 C 1.53000 * 109.47355 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.46763 * 111.30228 * 359.97438 * 7 5 4 21 21 H 1.09003 * 109.47254 * 296.20702 * 1 2 3 22 22 H 1.08999 * 109.47468 * 56.20759 * 1 2 3 23 23 H 1.09006 * 109.46676 * 176.20785 * 1 2 3 24 24 H 1.09004 * 110.48432 * 335.76227 * 4 2 1 25 25 H 1.08997 * 110.48601 * 98.26831 * 4 2 1 26 26 H 1.08994 * 109.47397 * 149.69514 * 8 7 5 27 27 H 1.09003 * 109.47525 * 29.69461 * 8 7 5 28 28 H 1.09002 * 109.46926 * 60.00006 * 9 8 7 29 29 H 1.08992 * 109.47494 * 300.00001 * 9 8 7 30 30 H 1.09002 * 109.46807 * 60.00291 * 10 9 8 31 31 H 1.08998 * 109.47285 * 299.99893 * 10 9 8 32 32 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 33 33 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.08991 * 110.24798 * 102.25499 * 20 7 5 36 36 H 1.09007 * 110.24681 * 224.25388 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0834 -0.8038 -1.1994 5 6 3.3116 -1.4930 -0.6471 6 8 4.1907 -1.9895 -1.3191 7 7 3.2852 -1.4777 0.6967 8 6 4.3260 -2.0556 1.5506 9 6 3.9839 -3.5155 1.8546 10 6 5.0712 -4.1192 2.7458 11 6 4.7288 -5.5790 3.0503 12 6 5.7994 -6.1734 3.9286 13 1 6.6398 -5.5703 4.2390 14 6 5.7061 -7.4874 4.3360 15 7 4.6825 -8.2217 3.9584 16 14 7.0336 -8.2243 5.4241 17 1 8.0943 -8.8229 4.5745 18 1 7.6231 -7.1600 6.2755 19 1 6.4386 -9.2760 6.2873 20 6 2.0830 -0.8021 1.1988 21 1 -0.3634 0.4538 0.9220 22 1 -0.3634 0.5716 -0.8540 23 1 -0.3633 -1.0255 -0.0680 24 1 1.3505 -1.5358 -1.5388 25 1 2.3571 -0.1335 -2.0142 26 1 4.3841 -1.4943 2.4830 27 1 5.2861 -2.0068 1.0368 28 1 3.9259 -4.0769 0.9220 29 1 3.0240 -3.5644 2.3684 30 1 5.1296 -3.5580 3.6784 31 1 6.0310 -4.0705 2.2316 32 1 4.6700 -6.1405 2.1178 33 1 3.7690 -5.6274 3.5646 34 1 4.6170 -9.1462 4.2447 35 1 1.3492 -1.5359 1.5320 36 1 2.3421 -0.1288 2.0159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385205126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:18 Heat of formation + Delta-G solvation = -65.028438 kcal Electronic energy + Delta-G solvation = -15201.674280 eV Core-core repulsion = 12684.596707 eV Total energy + Delta-G solvation = -2517.077573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43442 -36.64872 -35.45559 -33.47384 -31.94139 -29.28373 -28.05356 -26.27427 -24.60317 -22.08189 -21.00530 -20.05923 -19.29638 -16.77681 -16.33294 -16.17680 -15.37652 -14.52009 -14.45351 -14.16643 -13.94078 -13.55609 -12.91941 -12.80243 -12.50247 -12.29104 -12.00123 -11.81448 -11.59099 -11.21579 -11.15246 -10.94600 -10.56668 -10.48988 -10.48060 -9.72429 -9.62903 -9.36211 -9.06702 -8.51562 -8.31052 -5.96101 -3.98372 2.66090 3.07749 3.34536 3.40336 3.43776 4.18630 4.25168 4.46976 4.49182 4.84015 5.11486 5.23433 5.25937 5.34206 5.39446 5.41818 5.47652 5.58792 5.65518 5.72315 5.77750 5.93787 6.03559 6.14417 6.49617 6.65255 6.79163 6.94605 7.18542 7.22271 7.72259 7.87681 8.04621 8.25322 8.47261 9.09011 9.65420 11.15330 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052771 B = 0.004329 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.470456 B = 6466.609916 C = 6610.947922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.152 4.152 5 C 0.512 3.488 6 O -0.533 6.533 7 N -0.617 5.617 8 C 0.124 3.876 9 C -0.132 4.132 10 C -0.108 4.108 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.287 1.287 20 C 0.104 3.896 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 18.061 -6.313 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.192 4.192 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.351 5.351 8 C 0.003 3.997 9 C -0.171 4.171 10 C -0.146 4.146 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.020 4.020 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.550 17.593 -6.590 20.641 hybrid contribution 0.623 -0.569 0.710 1.103 sum -7.927 17.024 -5.880 19.678 Atomic orbital electron populations 1.21769 0.93204 1.02611 1.02369 1.22157 0.96866 0.99404 0.93957 0.89260 1.22463 0.97061 1.00682 0.99034 1.20874 0.87340 0.79312 0.82491 1.90735 1.40306 1.47206 1.62743 1.48414 1.22741 1.57205 1.06720 1.21613 0.89899 0.94653 0.93530 1.22018 1.00354 0.93896 1.00822 1.21572 0.96433 0.99473 0.97116 1.19089 0.96735 0.89179 0.96590 1.21285 1.07709 0.96360 1.30483 0.92699 1.25039 0.95752 0.97293 0.96453 1.69974 1.29691 1.08146 1.45787 0.86598 0.81952 0.78917 0.80555 1.20665 1.19885 1.21246 1.22197 0.87098 0.95829 0.96836 0.91916 0.91958 0.91990 0.87806 0.88378 0.90616 0.90187 0.92137 0.92383 0.93350 0.93227 0.96660 0.96724 0.93055 0.90830 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.14 37.15 0.34 -0.44 16 2 C -0.10 -0.76 3.75 -88.99 -0.33 -1.09 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.45 6.42 -26.74 -0.17 -1.62 16 5 C 0.51 7.50 8.02 -10.86 -0.09 7.41 16 6 O -0.53 -10.28 17.59 5.56 0.10 -10.18 16 7 N -0.62 -8.20 2.93 -172.42 -0.51 -8.70 16 8 C 0.12 1.84 5.93 -4.04 -0.02 1.81 16 9 C -0.13 -2.37 5.54 -26.73 -0.15 -2.52 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C 0.10 0.96 6.92 -3.13 -0.02 0.93 16 21 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 24 H 0.10 0.90 7.84 -51.93 -0.41 0.49 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -33.93 300.54 -7.56 -41.49 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -6.26 Total: -5.84 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.13 Total: -11.46 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.23 Total: -35.61 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.10 Total: -10.18 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.93 -7.56 -41.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385205126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.536 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds