Wall clock time and date at job start Mon Mar 30 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.85906 * 2 1 4 4 C 1.54630 * 110.97368 * 236.17212 * 2 1 3 5 5 C 1.51276 * 104.13568 * 216.86180 * 4 2 1 6 6 O 1.21282 * 124.94139 * 196.50739 * 5 4 2 7 7 N 1.34419 * 110.11513 * 16.65118 * 5 4 2 8 8 C 1.46499 * 124.35021 * 180.25303 * 7 5 4 9 9 C 1.53001 * 109.47073 * 269.69594 * 8 7 5 10 10 C 1.53000 * 109.47355 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.46763 * 111.30228 * 359.97438 * 7 5 4 21 21 H 1.09003 * 109.47254 * 296.20702 * 1 2 3 22 22 H 1.08999 * 109.47468 * 56.20759 * 1 2 3 23 23 H 1.09006 * 109.46676 * 176.20785 * 1 2 3 24 24 H 1.09004 * 110.48432 * 335.76227 * 4 2 1 25 25 H 1.08997 * 110.48601 * 98.26831 * 4 2 1 26 26 H 1.08994 * 109.47397 * 149.69514 * 8 7 5 27 27 H 1.09003 * 109.47525 * 29.69461 * 8 7 5 28 28 H 1.09002 * 109.46926 * 60.00006 * 9 8 7 29 29 H 1.08992 * 109.47494 * 300.00001 * 9 8 7 30 30 H 1.09002 * 109.46807 * 60.00291 * 10 9 8 31 31 H 1.08998 * 109.47285 * 299.99893 * 10 9 8 32 32 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 33 33 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.08991 * 110.24798 * 102.25499 * 20 7 5 36 36 H 1.09007 * 110.24681 * 224.25388 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0834 -0.8038 -1.1994 5 6 3.3116 -1.4930 -0.6471 6 8 4.1907 -1.9895 -1.3191 7 7 3.2852 -1.4777 0.6967 8 6 4.3260 -2.0556 1.5506 9 6 3.9839 -3.5155 1.8546 10 6 5.0712 -4.1192 2.7458 11 6 4.7288 -5.5790 3.0503 12 6 5.7994 -6.1734 3.9286 13 1 6.6398 -5.5703 4.2390 14 6 5.7061 -7.4874 4.3360 15 7 4.6825 -8.2217 3.9584 16 14 7.0336 -8.2243 5.4241 17 1 8.0943 -8.8229 4.5745 18 1 7.6231 -7.1600 6.2755 19 1 6.4386 -9.2760 6.2873 20 6 2.0830 -0.8021 1.1988 21 1 -0.3634 0.4538 0.9220 22 1 -0.3634 0.5716 -0.8540 23 1 -0.3633 -1.0255 -0.0680 24 1 1.3505 -1.5358 -1.5388 25 1 2.3571 -0.1335 -2.0142 26 1 4.3841 -1.4943 2.4830 27 1 5.2861 -2.0068 1.0368 28 1 3.9259 -4.0769 0.9220 29 1 3.0240 -3.5644 2.3684 30 1 5.1296 -3.5580 3.6784 31 1 6.0310 -4.0705 2.2316 32 1 4.6700 -6.1405 2.1178 33 1 3.7690 -5.6274 3.5646 34 1 4.6170 -9.1462 4.2447 35 1 1.3492 -1.5359 1.5320 36 1 2.3421 -0.1288 2.0159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385205126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:18 Heat of formation + Delta-G solvation = -86.261400 kcal Electronic energy + Delta-G solvation = -15202.595010 eV Core-core repulsion = 12684.596707 eV Total energy + Delta-G solvation = -2517.998303 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43913 -37.76985 -36.95676 -35.14553 -33.58318 -30.66877 -29.15118 -27.38566 -26.10142 -23.75196 -21.90948 -21.63795 -20.38931 -18.47914 -17.65867 -17.38832 -16.54242 -16.49322 -15.95274 -15.09258 -14.91846 -14.71094 -14.23386 -13.97507 -13.83207 -13.49180 -13.41654 -13.22158 -12.86064 -12.54573 -12.39437 -12.30362 -12.17823 -11.79205 -11.73223 -11.46329 -11.40240 -11.19938 -10.78202 -10.57872 -9.69205 -8.21778 -6.33843 1.38722 1.40921 1.52003 1.54619 2.06843 2.40097 3.10999 3.41953 3.52388 3.88597 3.98969 4.07854 4.17451 4.37663 4.50546 4.60066 4.63788 4.66421 4.72145 4.82027 4.84743 4.93502 5.07062 5.12645 5.20127 5.23564 5.28173 5.48398 5.50282 5.62363 5.71751 5.83016 6.17900 6.22387 6.83407 7.14347 7.35774 8.90354 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052771 B = 0.004329 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.470456 B = 6466.609916 C = 6610.947922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.107 0.893 4 C -0.145 4.145 5 C 0.495 3.505 6 O -0.593 6.593 7 N -0.619 5.619 8 C 0.130 3.870 9 C -0.119 4.119 10 C -0.095 4.095 11 C 0.023 3.977 12 C -0.546 4.546 13 H 0.063 0.937 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.274 1.274 18 H -0.260 1.260 19 H -0.280 1.280 20 C 0.095 3.905 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.046 0.954 32 H -0.020 1.020 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 19.945 -5.193 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.125 0.875 4 C -0.185 4.185 5 C 0.285 3.715 6 O -0.474 6.474 7 N -0.351 5.351 8 C 0.008 3.992 9 C -0.158 4.158 10 C -0.133 4.133 11 C -0.015 4.015 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.200 1.200 18 H -0.184 1.184 19 H -0.205 1.205 20 C -0.027 4.027 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.065 0.935 32 H -0.001 1.001 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.954 19.515 -5.450 22.152 hybrid contribution 0.688 -1.177 0.357 1.409 sum -8.265 18.338 -5.093 20.750 Atomic orbital electron populations 1.21762 0.91584 1.02656 1.03609 1.22176 0.97956 0.99399 0.91361 0.87522 1.22506 0.94674 1.00958 1.00315 1.21859 0.88039 0.78728 0.82864 1.90692 1.42824 1.49849 1.64083 1.48574 1.23468 1.56592 1.06456 1.21410 0.89872 0.92882 0.95035 1.21831 0.99570 0.95760 0.98658 1.21373 0.97238 0.96148 0.98585 1.19021 0.95540 0.92499 0.94392 1.21740 1.08436 0.97163 1.31007 0.91925 1.26055 0.98297 0.97797 0.97938 1.70114 1.31826 1.08642 1.47029 0.85395 0.78595 0.78228 0.78512 1.19966 1.18367 1.20534 1.22547 0.85471 0.96285 0.98376 0.90680 0.90734 0.92588 0.86970 0.86995 0.87452 0.91771 0.95099 0.91703 0.91503 0.93543 1.00129 0.98770 0.92747 0.90580 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.14 71.98 0.66 -0.40 16 2 C -0.09 -1.02 3.75 -9.74 -0.04 -1.06 16 3 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 4 C -0.14 -2.50 6.42 30.59 0.20 -2.30 16 5 C 0.50 14.46 8.02 87.90 0.70 15.16 16 6 O -0.59 -23.80 17.59 -3.04 -0.05 -23.85 16 7 N -0.62 -15.77 2.93 -818.02 -2.40 -18.17 16 8 C 0.13 3.75 5.93 86.38 0.51 4.26 16 9 C -0.12 -4.34 5.54 30.59 0.17 -4.17 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.91 16 11 C 0.02 1.25 4.97 29.85 0.15 1.40 16 12 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 13 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 14 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 15 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 16 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C 0.09 1.49 6.92 86.83 0.60 2.09 16 21 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 22 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.06 0.52 8.06 -2.38 -0.02 0.50 16 24 H 0.11 1.77 7.84 -2.39 -0.02 1.75 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.06 2.06 7.92 -2.39 -0.02 2.05 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.08 1.19 7.89 -2.39 -0.02 1.17 16 36 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -76.08 300.54 4.68 -71.40 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.02 Total: 2.50 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.81 Total: -20.64 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.11 Total: -76.69 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.08 4.68 -71.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385205126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.864 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds