Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47133 * 240.00414 * 2 1 3 5 5 H 1.08999 * 115.54864 * 280.02568 * 4 2 1 6 6 C 1.53001 * 117.50097 * 134.31181 * 4 2 1 7 7 C 1.53002 * 60.00177 * 252.50915 * 6 4 2 8 8 C 1.52996 * 117.49702 * 252.50979 * 7 6 4 9 9 C 1.52997 * 117.51464 * 107.48083 * 7 6 4 10 10 N 1.46498 * 109.47266 * 120.00012 * 2 1 3 11 11 C 1.46501 * 119.99601 * 60.00187 * 10 2 1 12 12 C 1.34776 * 120.00012 * 239.99758 * 10 2 1 13 13 O 1.21687 * 119.99795 * 0.02562 * 12 10 2 14 14 C 1.46371 * 119.99657 * 179.97438 * 12 10 2 15 15 H 1.07998 * 120.00607 * 355.11848 * 14 12 10 16 16 C 1.40051 * 119.99672 * 175.11899 * 14 12 10 17 17 N 1.30672 * 120.00313 * 5.52949 * 16 14 12 18 18 Si 1.86803 * 120.00074 * 185.53162 * 16 14 12 19 19 H 1.48503 * 109.47137 * 94.99108 * 18 16 14 20 20 H 1.48496 * 109.47119 * 214.99323 * 18 16 14 21 21 H 1.48505 * 109.46921 * 334.99101 * 18 16 14 22 22 H 1.09001 * 109.46953 * 172.09050 * 1 2 3 23 23 H 1.09003 * 109.47359 * 292.09039 * 1 2 3 24 24 H 1.09005 * 109.47486 * 52.09465 * 1 2 3 25 25 H 1.08999 * 117.49701 * 0.02562 * 6 4 2 26 26 H 1.09000 * 117.49676 * 145.01278 * 6 4 2 27 27 H 1.09004 * 109.46823 * 128.62251 * 8 7 6 28 28 H 1.09004 * 109.46704 * 248.62019 * 8 7 6 29 29 H 1.08994 * 109.47332 * 8.62210 * 8 7 6 30 30 H 1.09007 * 109.47485 * 341.91077 * 9 7 6 31 31 H 1.08993 * 109.47171 * 101.91497 * 9 7 6 32 32 H 1.09003 * 109.47292 * 221.91666 * 9 7 6 33 33 H 1.09004 * 109.46927 * 90.00191 * 11 10 2 34 34 H 1.09006 * 109.46607 * 209.99477 * 11 10 2 35 35 H 1.08994 * 109.47625 * 329.99829 * 11 10 2 36 36 H 0.96997 * 120.00341 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 2.0353 -1.8100 -1.1984 6 6 3.1693 -0.0552 -2.0380 7 6 1.7487 -0.0761 -2.6058 8 6 1.4739 -1.0088 -3.7871 9 6 0.9694 1.2405 -2.6092 10 7 2.0184 -0.6906 1.1961 11 6 1.6644 -2.0932 1.4279 12 6 2.7933 -0.0356 2.0833 13 8 3.0868 1.1295 1.8909 14 6 3.2807 -0.7255 3.2786 15 1 2.9561 -1.7335 3.4906 16 6 4.1681 -0.0784 4.1476 17 7 4.4767 1.1761 3.9514 18 14 4.9107 -1.0086 5.5873 19 1 6.2399 -1.5444 5.1979 20 1 5.0668 -0.0894 6.7430 21 1 4.0157 -2.1317 5.9655 22 1 -0.3633 -1.0179 -0.1414 23 1 -0.3634 0.3865 0.9522 24 1 -0.3634 0.6314 -0.8109 25 1 3.5492 0.8966 -1.6666 26 1 3.9081 -0.7058 -2.5059 27 1 0.6019 -1.6252 -3.5681 28 1 1.2842 -0.4157 -4.6818 29 1 2.3396 -1.6499 -3.9530 30 1 1.4329 1.9389 -1.9123 31 1 0.9806 1.6667 -3.6123 32 1 -0.0606 1.0538 -2.3052 33 1 2.4158 -2.7377 0.9715 34 1 1.6239 -2.2852 2.5001 35 1 0.6905 -2.3003 0.9846 36 1 5.0910 1.6244 4.5534 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397765741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = -19.138989 kcal Electronic energy + Delta-G solvation = -16191.542206 eV Core-core repulsion = 13676.454549 eV Total energy + Delta-G solvation = -2515.087657 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04932 -37.05592 -34.01946 -32.41115 -30.42295 -28.97153 -27.23505 -26.08151 -25.58314 -22.95513 -20.71762 -18.99792 -18.08257 -16.49511 -15.71531 -15.05717 -14.43155 -14.03433 -13.86691 -13.54249 -13.46939 -12.85488 -12.56273 -12.23148 -12.02167 -11.69443 -11.48897 -11.43798 -11.30762 -11.18697 -11.01425 -10.88618 -10.82037 -10.28535 -10.08613 -10.06850 -9.40140 -9.19462 -8.82094 -7.51683 -7.12698 -6.16444 -4.60361 3.15057 3.22225 3.25478 3.99459 4.14283 4.59021 4.63505 4.97107 5.11824 5.23166 5.32085 5.69458 5.70710 5.77630 5.84495 5.92026 5.97817 6.02933 6.08454 6.13546 6.15032 6.19457 6.24577 6.38132 6.47896 6.50676 6.60744 6.61272 6.78421 6.92387 7.48326 7.73030 8.20794 8.43481 9.05882 9.49472 10.61758 10.80976 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044625 B = 0.006941 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.296654 B = 4033.078280 C = 4130.159635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.174 3.826 3 H 0.092 0.908 4 C -0.141 4.141 5 H 0.097 0.903 6 C -0.166 4.166 7 C -0.133 4.133 8 C -0.110 4.110 9 C -0.119 4.119 10 N -0.640 5.640 11 C 0.102 3.898 12 C 0.558 3.442 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -4.919 -9.817 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.110 0.890 4 C -0.161 4.161 5 H 0.115 0.885 6 C -0.203 4.203 7 C -0.134 4.134 8 C -0.167 4.167 9 C -0.175 4.175 10 N -0.377 5.377 11 C -0.042 4.042 12 C 0.364 3.636 13 O -0.463 6.463 14 C -0.581 4.581 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.610 -4.106 -9.837 12.046 hybrid contribution 0.476 -0.725 0.718 1.126 sum -5.134 -4.830 -9.119 11.526 Atomic orbital electron populations 1.22310 0.96830 1.01174 1.01680 1.20146 0.92140 0.97432 0.83371 0.88968 1.22859 1.02484 0.98909 0.91799 0.88494 1.23202 0.90719 1.02888 1.03520 1.21520 0.98909 0.98082 0.94863 1.21295 1.01198 0.98140 0.96090 1.21511 0.99840 0.94844 1.01338 1.47933 1.55573 1.11283 1.22906 1.21333 0.97432 0.83911 1.01544 1.18240 0.76887 0.85929 0.82525 1.90573 1.60645 1.17384 1.77654 1.21019 1.28842 1.01411 1.06787 0.90993 1.25733 0.95287 0.94326 0.97845 1.70030 1.26370 1.09633 1.33642 0.86400 0.79788 0.80020 0.80803 1.19837 1.20479 1.18876 0.93305 0.92705 0.91888 0.88690 0.89591 0.92598 0.92574 0.92826 0.92017 0.92885 0.91715 0.95347 0.91227 0.94013 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.75 37.16 0.33 -2.37 16 2 C 0.17 3.48 2.24 -67.93 -0.15 3.33 16 3 H 0.09 2.14 5.99 -51.93 -0.31 1.83 16 4 C -0.14 -2.40 4.83 -90.62 -0.44 -2.84 16 5 H 0.10 1.62 7.55 -51.93 -0.39 1.22 16 6 C -0.17 -2.75 9.47 -26.73 -0.25 -3.00 16 7 C -0.13 -1.88 2.63 -154.51 -0.41 -2.28 16 8 C -0.11 -1.27 9.85 37.16 0.37 -0.90 16 9 C -0.12 -1.56 8.27 37.16 0.31 -1.26 16 10 N -0.64 -14.86 2.76 -175.59 -0.48 -15.34 16 11 C 0.10 1.96 9.17 59.85 0.55 2.51 16 12 C 0.56 16.15 7.61 -12.99 -0.10 16.05 16 13 O -0.58 -18.92 14.36 5.20 0.07 -18.85 16 14 C -0.54 -15.50 8.76 -35.63 -0.31 -15.81 16 15 H 0.07 1.88 5.95 -52.49 -0.31 1.57 16 16 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 17 N -0.77 -23.25 11.85 55.55 0.66 -22.59 16 18 Si 0.91 20.32 29.56 -169.99 -5.03 15.29 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 22 H 0.05 0.74 7.00 -51.93 -0.36 0.37 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.91 4.81 -51.93 -0.25 0.66 16 25 H 0.09 1.74 8.06 -51.93 -0.42 1.33 16 26 H 0.09 1.30 8.05 -51.93 -0.42 0.89 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 29 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 30 H 0.06 0.91 7.21 -51.92 -0.37 0.54 16 31 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.06 0.80 5.75 -51.93 -0.30 0.50 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.38 6.04 -51.93 -0.31 1.06 16 35 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 36 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 286.68 15.07 4.32 4.32 Total: -1.00 -33.26 286.68 -6.11 -39.37 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.44 Total: 1.99 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.21 Total: -4.19 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.17 Total: -37.93 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.07 Total: -18.85 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.26 -6.11 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.229 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds