Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47133 * 240.00414 * 2 1 3 5 5 H 1.08999 * 115.54864 * 280.02568 * 4 2 1 6 6 C 1.53001 * 117.50097 * 134.31181 * 4 2 1 7 7 C 1.53002 * 60.00177 * 252.50915 * 6 4 2 8 8 C 1.52996 * 117.49702 * 252.50979 * 7 6 4 9 9 C 1.52997 * 117.51464 * 107.48083 * 7 6 4 10 10 N 1.46498 * 109.47266 * 120.00012 * 2 1 3 11 11 C 1.46501 * 119.99601 * 60.00187 * 10 2 1 12 12 C 1.34776 * 120.00012 * 239.99758 * 10 2 1 13 13 O 1.21687 * 119.99795 * 0.02562 * 12 10 2 14 14 C 1.46371 * 119.99657 * 179.97438 * 12 10 2 15 15 H 1.07998 * 120.00607 * 355.11848 * 14 12 10 16 16 C 1.40051 * 119.99672 * 175.11899 * 14 12 10 17 17 N 1.30672 * 120.00313 * 5.52949 * 16 14 12 18 18 Si 1.86803 * 120.00074 * 185.53162 * 16 14 12 19 19 H 1.48503 * 109.47137 * 94.99108 * 18 16 14 20 20 H 1.48496 * 109.47119 * 214.99323 * 18 16 14 21 21 H 1.48505 * 109.46921 * 334.99101 * 18 16 14 22 22 H 1.09001 * 109.46953 * 172.09050 * 1 2 3 23 23 H 1.09003 * 109.47359 * 292.09039 * 1 2 3 24 24 H 1.09005 * 109.47486 * 52.09465 * 1 2 3 25 25 H 1.08999 * 117.49701 * 0.02562 * 6 4 2 26 26 H 1.09000 * 117.49676 * 145.01278 * 6 4 2 27 27 H 1.09004 * 109.46823 * 128.62251 * 8 7 6 28 28 H 1.09004 * 109.46704 * 248.62019 * 8 7 6 29 29 H 1.08994 * 109.47332 * 8.62210 * 8 7 6 30 30 H 1.09007 * 109.47485 * 341.91077 * 9 7 6 31 31 H 1.08993 * 109.47171 * 101.91497 * 9 7 6 32 32 H 1.09003 * 109.47292 * 221.91666 * 9 7 6 33 33 H 1.09004 * 109.46927 * 90.00191 * 11 10 2 34 34 H 1.09006 * 109.46607 * 209.99477 * 11 10 2 35 35 H 1.08994 * 109.47625 * 329.99829 * 11 10 2 36 36 H 0.96997 * 120.00341 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 2.0353 -1.8100 -1.1984 6 6 3.1693 -0.0552 -2.0380 7 6 1.7487 -0.0761 -2.6058 8 6 1.4739 -1.0088 -3.7871 9 6 0.9694 1.2405 -2.6092 10 7 2.0184 -0.6906 1.1961 11 6 1.6644 -2.0932 1.4279 12 6 2.7933 -0.0356 2.0833 13 8 3.0868 1.1295 1.8909 14 6 3.2807 -0.7255 3.2786 15 1 2.9561 -1.7335 3.4906 16 6 4.1681 -0.0784 4.1476 17 7 4.4767 1.1761 3.9514 18 14 4.9107 -1.0086 5.5873 19 1 6.2399 -1.5444 5.1979 20 1 5.0668 -0.0894 6.7430 21 1 4.0157 -2.1317 5.9655 22 1 -0.3633 -1.0179 -0.1414 23 1 -0.3634 0.3865 0.9522 24 1 -0.3634 0.6314 -0.8109 25 1 3.5492 0.8966 -1.6666 26 1 3.9081 -0.7058 -2.5059 27 1 0.6019 -1.6252 -3.5681 28 1 1.2842 -0.4157 -4.6818 29 1 2.3396 -1.6499 -3.9530 30 1 1.4329 1.9389 -1.9123 31 1 0.9806 1.6667 -3.6123 32 1 -0.0606 1.0538 -2.3052 33 1 2.4158 -2.7377 0.9715 34 1 1.6239 -2.2852 2.5001 35 1 0.6905 -2.3003 0.9846 36 1 5.0910 1.6244 4.5534 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397765741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = -40.664683 kcal Electronic energy + Delta-G solvation = -16192.475630 eV Core-core repulsion = 13676.454549 eV Total energy + Delta-G solvation = -2516.021081 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55963 -38.87663 -35.90003 -34.60004 -31.98972 -30.14465 -28.43482 -28.00108 -27.26510 -24.49381 -22.38929 -20.64533 -19.41552 -18.46943 -17.75919 -16.76504 -16.03593 -15.63679 -15.32397 -15.04887 -14.79143 -14.32104 -13.96823 -13.68710 -13.48227 -13.14749 -13.10892 -13.02889 -12.89337 -12.75856 -12.58928 -12.36329 -12.17815 -12.02628 -11.99760 -11.55119 -10.93500 -10.69917 -10.47894 -9.72977 -9.01942 -8.28550 -6.83026 1.38446 1.39888 1.55612 2.23273 2.46698 2.67791 3.02610 3.59135 3.70534 3.92470 3.97112 4.22028 4.37269 4.39061 4.55162 4.57464 4.72344 4.78289 4.85321 4.88190 4.92869 4.99903 5.07683 5.09576 5.11268 5.13945 5.23466 5.35244 5.38152 5.44028 5.56109 5.82303 6.17272 6.50247 6.88317 7.46011 8.49493 8.68883 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044625 B = 0.006941 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.296654 B = 4033.078280 C = 4130.159635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.153 4.153 5 H 0.108 0.892 6 C -0.188 4.188 7 C -0.099 4.099 8 C -0.108 4.108 9 C -0.122 4.122 10 N -0.643 5.643 11 C 0.100 3.900 12 C 0.538 3.462 13 O -0.635 6.635 14 C -0.570 4.570 15 H 0.092 0.908 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 0.996 3.004 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.246 1.246 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -7.478 -10.667 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.067 3.933 3 H 0.064 0.936 4 C -0.172 4.172 5 H 0.126 0.874 6 C -0.225 4.225 7 C -0.100 4.100 8 C -0.164 4.164 9 C -0.179 4.179 10 N -0.378 5.378 11 C -0.043 4.043 12 C 0.344 3.656 13 O -0.522 6.522 14 C -0.607 4.607 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.454 5.454 18 Si 0.815 3.185 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.169 1.169 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.825 -6.711 -10.727 14.377 hybrid contribution 0.799 0.107 0.904 1.211 sum -6.026 -6.605 -9.822 13.282 Atomic orbital electron populations 1.22220 0.93914 1.03161 1.01572 1.20250 0.94307 0.95167 0.83607 0.93602 1.22738 1.03513 0.99078 0.91909 0.87355 1.23201 0.92535 1.01763 1.05050 1.21683 0.96047 0.98324 0.93960 1.21340 1.02077 0.97914 0.95115 1.21568 1.00098 0.94017 1.02190 1.47841 1.54271 1.12801 1.22907 1.21502 0.99673 0.81497 1.01594 1.18673 0.77459 0.85620 0.83838 1.90523 1.62886 1.19711 1.79119 1.21549 1.29474 1.02413 1.07234 0.88968 1.27021 0.95272 0.95148 1.01293 1.70211 1.27475 1.12135 1.35548 0.85040 0.78932 0.78621 0.75907 1.18911 1.19776 1.16869 0.90718 0.94733 0.89526 0.92057 0.88266 0.91011 0.90632 0.92396 0.94811 0.90383 0.90210 0.94176 0.92013 0.90350 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 8.75 71.98 0.63 -4.21 16 2 C 0.17 6.95 2.24 44.99 0.10 7.05 16 3 H 0.05 2.29 5.99 -2.38 -0.01 2.27 16 4 C -0.15 -5.08 4.83 -10.79 -0.05 -5.13 16 5 H 0.11 3.36 7.55 -2.39 -0.02 3.34 16 6 C -0.19 -6.33 9.47 30.60 0.29 -6.04 16 7 C -0.10 -2.62 2.63 -52.18 -0.14 -2.75 16 8 C -0.11 -2.04 9.85 71.98 0.71 -1.33 16 9 C -0.12 -3.03 8.27 71.98 0.60 -2.44 16 10 N -0.64 -30.36 2.76 -827.68 -2.29 -32.64 16 11 C 0.10 3.70 9.17 127.77 1.17 4.87 16 12 C 0.54 32.49 7.61 86.36 0.66 33.14 16 13 O -0.63 -44.22 14.36 -4.31 -0.06 -44.28 16 14 C -0.57 -33.14 8.76 24.83 0.22 -32.92 16 15 H 0.09 4.79 5.95 -2.91 -0.02 4.77 16 16 C 0.03 1.56 5.50 85.31 0.47 2.03 16 17 N -0.82 -51.91 11.85 21.84 0.26 -51.65 16 18 Si 1.00 41.85 29.56 68.60 2.03 43.88 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 22 H 0.07 2.01 7.00 -2.39 -0.02 1.99 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.09 2.34 4.81 -2.38 -0.01 2.33 16 25 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 26 H 0.10 2.99 8.05 -2.39 -0.02 2.97 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.07 1.19 8.04 -2.38 -0.02 1.17 16 29 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 30 H 0.03 1.02 7.21 -2.38 -0.02 1.00 16 31 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.08 1.75 5.75 -2.39 -0.01 1.73 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.06 2.36 6.04 -2.38 -0.01 2.35 16 35 H 0.08 2.30 6.60 -2.39 -0.02 2.28 16 36 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 Total: -1.00 -77.37 286.68 5.65 -71.72 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.06 Total: 20.71 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 4.65 Total: -7.74 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.03 Total: -84.30 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.06 Total: -44.28 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -77.37 5.65 -71.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.059 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds