Wall clock time and date at job start Mon Mar 30 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47460 * 2 1 4 4 C 1.53003 * 109.47072 * 119.99933 * 2 1 3 5 5 H 1.08994 * 115.54735 * 78.49227 * 4 2 1 6 6 C 1.53002 * 117.50013 * 224.16781 * 4 2 1 7 7 C 1.53003 * 117.49563 * 292.82579 * 4 2 1 8 8 C 1.52995 * 117.50219 * 359.97438 * 7 4 2 9 9 C 1.53005 * 117.49807 * 145.02105 * 7 4 2 10 10 N 1.46500 * 109.47276 * 239.99662 * 2 1 3 11 11 C 1.46498 * 120.00064 * 300.00242 * 10 2 1 12 12 C 1.34780 * 119.99773 * 119.99958 * 10 2 1 13 13 O 1.21688 * 120.00240 * 359.73051 * 12 10 2 14 14 C 1.46378 * 119.99910 * 179.97438 * 12 10 2 15 15 H 1.08002 * 119.99839 * 0.02562 * 14 12 10 16 16 C 1.40044 * 119.99937 * 180.02562 * 14 12 10 17 17 N 1.30668 * 120.00400 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99733 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47009 * 60.00403 * 18 16 14 20 20 H 1.48496 * 109.46880 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47274 * 299.99767 * 18 16 14 22 22 H 1.08996 * 109.47383 * 177.96124 * 1 2 3 23 23 H 1.09004 * 109.47328 * 297.96509 * 1 2 3 24 24 H 1.09002 * 109.46857 * 57.95659 * 1 2 3 25 25 H 1.08999 * 117.49790 * 214.97780 * 6 4 2 26 26 H 1.08996 * 117.49730 * 359.97438 * 6 4 2 27 27 H 1.09005 * 109.46905 * 72.28824 * 8 7 4 28 28 H 1.08993 * 109.47438 * 192.29035 * 8 7 4 29 29 H 1.09003 * 109.46942 * 312.29482 * 8 7 4 30 30 H 1.08997 * 109.47066 * 59.99511 * 9 7 4 31 31 H 1.08995 * 109.47293 * 180.02562 * 9 7 4 32 32 H 1.09008 * 109.46677 * 299.99896 * 9 7 4 33 33 H 1.08998 * 109.47038 * 270.00052 * 11 10 2 34 34 H 1.09001 * 109.46993 * 29.99838 * 11 10 2 35 35 H 1.08999 * 109.46889 * 149.99805 * 11 10 2 36 36 H 0.96993 * 120.00261 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.0117 -1.8100 1.2079 6 6 3.1933 -0.0731 2.0179 7 6 1.7790 -0.0586 2.6035 8 6 1.0287 1.2747 2.6048 9 6 1.4990 -0.9752 3.7962 10 7 2.0183 -0.6907 -1.1961 11 6 1.6644 -2.0932 -1.4279 12 6 2.7932 -0.0357 -2.0833 13 8 3.0831 1.1308 -1.8933 14 6 3.2817 -0.7259 -3.2781 15 1 3.0208 -1.7599 -3.4490 16 6 4.0872 -0.0454 -4.1997 17 7 4.4033 1.2054 -3.9928 18 14 4.7100 -0.9262 -5.7249 19 1 3.5550 -1.3923 -6.5336 20 1 5.5349 0.0072 -6.5332 21 1 5.5345 -2.0932 -5.3207 22 1 -0.3634 -1.0270 -0.0366 23 1 -0.3634 0.4819 0.9077 24 1 -0.3633 0.5453 -0.8711 25 1 3.9236 -0.7356 2.4825 26 1 3.5890 0.8669 1.6333 27 1 -0.0202 1.1015 2.3636 28 1 1.1039 1.7330 3.5908 29 1 1.4676 1.9393 1.8606 30 1 2.3530 -1.6331 3.9571 31 1 1.3324 -0.3707 4.6877 32 1 0.6116 -1.5748 3.5931 33 1 2.4157 -2.7377 -0.9715 34 1 0.6904 -2.3002 -0.9846 35 1 1.6238 -2.2852 -2.5001 36 1 4.9616 1.6766 -4.6309 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397765743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:45 Heat of formation + Delta-G solvation = -19.651527 kcal Electronic energy + Delta-G solvation = -16190.433327 eV Core-core repulsion = 13675.323444 eV Total energy + Delta-G solvation = -2515.109882 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04449 -37.05072 -34.02424 -32.40786 -30.41307 -28.94831 -27.23952 -26.08120 -25.59824 -22.94826 -20.71855 -18.99325 -18.07030 -16.48992 -15.71442 -15.05139 -14.42601 -14.04619 -13.87748 -13.54716 -13.45274 -12.85329 -12.54261 -12.24647 -12.00361 -11.69478 -11.47041 -11.44295 -11.30082 -11.19494 -11.01373 -10.89209 -10.82541 -10.28632 -10.10279 -10.05396 -9.39807 -9.20152 -8.81712 -7.52148 -7.12347 -6.15392 -4.60674 3.17060 3.21899 3.23609 3.99352 4.14379 4.59744 4.63702 4.96908 5.12212 5.23464 5.31891 5.70747 5.71760 5.78013 5.84021 5.90719 5.98332 6.03461 6.08841 6.13296 6.15494 6.19385 6.24844 6.38442 6.47416 6.51537 6.61508 6.61926 6.77840 6.92870 7.47839 7.73175 8.20304 8.43427 9.05778 9.49652 10.62252 10.81413 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045317 B = 0.006928 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.716097 B = 4040.343315 C = 4151.388257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.174 3.826 3 H 0.093 0.907 4 C -0.141 4.141 5 H 0.097 0.903 6 C -0.166 4.166 7 C -0.133 4.133 8 C -0.118 4.118 9 C -0.110 4.110 10 N -0.639 5.639 11 C 0.102 3.898 12 C 0.558 3.442 13 O -0.579 6.579 14 C -0.544 4.544 15 H 0.071 0.929 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -4.874 9.775 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.111 0.889 4 C -0.161 4.161 5 H 0.115 0.885 6 C -0.203 4.203 7 C -0.134 4.134 8 C -0.174 4.174 9 C -0.167 4.167 10 N -0.377 5.377 11 C -0.043 4.043 12 C 0.364 3.636 13 O -0.462 6.462 14 C -0.580 4.580 15 H 0.089 0.911 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.730 3.270 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.582 -4.054 9.791 11.978 hybrid contribution 0.392 -0.709 -0.776 1.122 sum -5.190 -4.763 9.015 11.441 Atomic orbital electron populations 1.22288 0.96839 1.01332 1.01561 1.20147 0.92153 0.97433 0.83364 0.88945 1.22848 1.02359 0.98881 0.91978 0.88526 1.23201 0.90595 1.03000 1.03505 1.21538 0.99289 0.97916 0.94671 1.21476 0.99846 0.94652 1.01455 1.21293 1.01186 0.98239 0.96008 1.47922 1.55518 1.11278 1.22963 1.21339 0.97460 0.83920 1.01567 1.18230 0.77000 0.85981 0.82364 1.90574 1.60959 1.17383 1.77323 1.20980 1.32896 0.98726 1.05428 0.91086 1.25730 0.94591 0.94404 0.98474 1.70010 1.27309 1.09155 1.33238 0.86472 0.79235 0.79790 0.81484 1.19292 1.20578 1.19300 0.93183 0.91920 0.92810 0.89589 0.88673 0.91876 0.92864 0.91949 0.92818 0.92572 0.92603 0.95367 0.93967 0.91199 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.05 37.16 0.34 -2.37 16 2 C 0.17 3.48 2.22 -67.93 -0.15 3.33 16 3 H 0.09 2.15 5.87 -51.93 -0.30 1.84 16 4 C -0.14 -2.40 4.81 -90.62 -0.44 -2.83 16 5 H 0.10 1.61 7.58 -51.93 -0.39 1.21 16 6 C -0.17 -2.75 9.48 -26.69 -0.25 -3.00 16 7 C -0.13 -1.88 2.63 -154.47 -0.41 -2.29 16 8 C -0.12 -1.56 8.29 37.16 0.31 -1.25 16 9 C -0.11 -1.27 9.85 37.16 0.37 -0.90 16 10 N -0.64 -14.86 2.76 -175.59 -0.48 -15.35 16 11 C 0.10 1.95 9.15 59.85 0.55 2.50 16 12 C 0.56 16.16 7.61 -12.98 -0.10 16.06 16 13 O -0.58 -18.92 14.35 5.20 0.07 -18.84 16 14 C -0.54 -15.49 8.74 -35.63 -0.31 -15.81 16 15 H 0.07 1.85 6.00 -52.49 -0.31 1.54 16 16 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 17 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 18 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 22 H 0.05 0.77 6.58 -51.93 -0.34 0.43 16 23 H 0.06 0.90 4.84 -51.93 -0.25 0.65 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 26 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 27 H 0.06 0.78 5.90 -51.93 -0.31 0.47 16 28 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.06 0.93 7.07 -51.93 -0.37 0.57 16 30 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.68 6.39 -51.93 -0.33 0.35 16 35 H 0.07 1.38 6.09 -51.93 -0.32 1.06 16 36 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -33.23 286.42 -6.07 -39.30 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.42 Total: 2.08 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.19 Total: -4.20 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.17 Total: -37.95 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.07 Total: -18.84 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.23 -6.07 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.650 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds