Wall clock time and date at job start Mon Mar 30 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47460 * 2 1 4 4 C 1.53003 * 109.47072 * 119.99933 * 2 1 3 5 5 H 1.08994 * 115.54735 * 78.49227 * 4 2 1 6 6 C 1.53002 * 117.50013 * 224.16781 * 4 2 1 7 7 C 1.53003 * 117.49563 * 292.82579 * 4 2 1 8 8 C 1.52995 * 117.50219 * 359.97438 * 7 4 2 9 9 C 1.53005 * 117.49807 * 145.02105 * 7 4 2 10 10 N 1.46500 * 109.47276 * 239.99662 * 2 1 3 11 11 C 1.46498 * 120.00064 * 300.00242 * 10 2 1 12 12 C 1.34780 * 119.99773 * 119.99958 * 10 2 1 13 13 O 1.21688 * 120.00240 * 359.73051 * 12 10 2 14 14 C 1.46378 * 119.99910 * 179.97438 * 12 10 2 15 15 H 1.08002 * 119.99839 * 0.02562 * 14 12 10 16 16 C 1.40044 * 119.99937 * 180.02562 * 14 12 10 17 17 N 1.30668 * 120.00400 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99733 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47009 * 60.00403 * 18 16 14 20 20 H 1.48496 * 109.46880 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47274 * 299.99767 * 18 16 14 22 22 H 1.08996 * 109.47383 * 177.96124 * 1 2 3 23 23 H 1.09004 * 109.47328 * 297.96509 * 1 2 3 24 24 H 1.09002 * 109.46857 * 57.95659 * 1 2 3 25 25 H 1.08999 * 117.49790 * 214.97780 * 6 4 2 26 26 H 1.08996 * 117.49730 * 359.97438 * 6 4 2 27 27 H 1.09005 * 109.46905 * 72.28824 * 8 7 4 28 28 H 1.08993 * 109.47438 * 192.29035 * 8 7 4 29 29 H 1.09003 * 109.46942 * 312.29482 * 8 7 4 30 30 H 1.08997 * 109.47066 * 59.99511 * 9 7 4 31 31 H 1.08995 * 109.47293 * 180.02562 * 9 7 4 32 32 H 1.09008 * 109.46677 * 299.99896 * 9 7 4 33 33 H 1.08998 * 109.47038 * 270.00052 * 11 10 2 34 34 H 1.09001 * 109.46993 * 29.99838 * 11 10 2 35 35 H 1.08999 * 109.46889 * 149.99805 * 11 10 2 36 36 H 0.96993 * 120.00261 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.0117 -1.8100 1.2079 6 6 3.1933 -0.0731 2.0179 7 6 1.7790 -0.0586 2.6035 8 6 1.0287 1.2747 2.6048 9 6 1.4990 -0.9752 3.7962 10 7 2.0183 -0.6907 -1.1961 11 6 1.6644 -2.0932 -1.4279 12 6 2.7932 -0.0357 -2.0833 13 8 3.0831 1.1308 -1.8933 14 6 3.2817 -0.7259 -3.2781 15 1 3.0208 -1.7599 -3.4490 16 6 4.0872 -0.0454 -4.1997 17 7 4.4033 1.2054 -3.9928 18 14 4.7100 -0.9262 -5.7249 19 1 3.5550 -1.3923 -6.5336 20 1 5.5349 0.0072 -6.5332 21 1 5.5345 -2.0932 -5.3207 22 1 -0.3634 -1.0270 -0.0366 23 1 -0.3634 0.4819 0.9077 24 1 -0.3633 0.5453 -0.8711 25 1 3.9236 -0.7356 2.4825 26 1 3.5890 0.8669 1.6333 27 1 -0.0202 1.1015 2.3636 28 1 1.1039 1.7330 3.5908 29 1 1.4676 1.9393 1.8606 30 1 2.3530 -1.6331 3.9571 31 1 1.3324 -0.3707 4.6877 32 1 0.6116 -1.5748 3.5931 33 1 2.4157 -2.7377 -0.9715 34 1 0.6904 -2.3002 -0.9846 35 1 1.6238 -2.2852 -2.5001 36 1 4.9616 1.6766 -4.6309 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397765743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:44 Heat of formation + Delta-G solvation = -41.172303 kcal Electronic energy + Delta-G solvation = -16191.366537 eV Core-core repulsion = 13675.323444 eV Total energy + Delta-G solvation = -2516.043093 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55786 -38.87084 -35.90535 -34.59674 -31.98358 -30.12611 -28.42781 -28.01474 -27.27961 -24.48974 -22.39211 -20.64117 -19.40592 -18.46308 -17.75797 -16.76488 -16.03565 -15.64000 -15.33676 -15.03574 -14.78881 -14.31107 -13.99363 -13.67958 -13.48165 -13.13637 -13.11386 -13.01680 -12.89480 -12.72474 -12.57656 -12.35205 -12.18661 -12.07459 -12.04322 -11.53583 -10.91943 -10.69595 -10.48698 -9.73694 -9.01573 -8.27469 -6.83427 1.38429 1.42337 1.53649 2.23501 2.46700 2.67802 3.03149 3.59423 3.70267 3.92807 3.97207 4.21581 4.37389 4.38951 4.56137 4.57332 4.71970 4.77757 4.84696 4.87710 4.92937 4.98995 5.07787 5.09429 5.11773 5.15072 5.23943 5.34819 5.37243 5.43582 5.55870 5.82356 6.16746 6.50416 6.88216 7.46167 8.49833 8.69234 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045317 B = 0.006928 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.716097 B = 4040.343315 C = 4151.388257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.153 4.153 5 H 0.109 0.891 6 C -0.188 4.188 7 C -0.100 4.100 8 C -0.121 4.121 9 C -0.107 4.107 10 N -0.643 5.643 11 C 0.099 3.901 12 C 0.538 3.462 13 O -0.634 6.634 14 C -0.571 4.571 15 H 0.092 0.908 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 0.996 3.004 19 H -0.253 1.253 20 H -0.275 1.275 21 H -0.254 1.254 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.032 0.968 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.070 -7.418 10.579 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.066 3.934 3 H 0.064 0.936 4 C -0.172 4.172 5 H 0.127 0.873 6 C -0.225 4.225 7 C -0.101 4.101 8 C -0.178 4.178 9 C -0.164 4.164 10 N -0.378 5.378 11 C -0.044 4.044 12 C 0.344 3.656 13 O -0.522 6.522 14 C -0.607 4.607 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.454 5.454 18 Si 0.815 3.185 19 H -0.176 1.176 20 H -0.200 1.200 21 H -0.178 1.178 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.848 -6.646 10.637 14.290 hybrid contribution 0.737 0.113 -0.942 1.202 sum -6.111 -6.533 9.695 13.191 Atomic orbital electron populations 1.22199 0.93959 1.02732 1.01992 1.20250 0.94291 0.95193 0.83620 0.93560 1.22727 1.03278 0.99119 0.92073 0.87309 1.23197 0.92335 1.01928 1.05067 1.21700 0.96347 0.98147 0.93882 1.21532 1.00282 0.93925 1.02026 1.21337 1.02089 0.98053 0.94954 1.47833 1.54234 1.12800 1.22959 1.21511 0.99709 0.81496 1.01642 1.18667 0.77592 0.85686 0.83650 1.90524 1.63177 1.19711 1.78800 1.21521 1.33429 0.99854 1.05881 0.88994 1.27019 0.94199 0.95060 1.02465 1.70200 1.28446 1.11593 1.35140 0.85107 0.78967 0.78414 0.76030 1.17647 1.19993 1.17815 0.90904 0.89300 0.94847 0.88224 0.92125 0.90249 0.90439 0.94867 0.92363 0.90645 0.90997 0.94198 0.90294 0.91953 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.05 71.98 0.65 -4.22 16 2 C 0.17 6.95 2.22 44.99 0.10 7.05 16 3 H 0.05 2.31 5.87 -2.38 -0.01 2.30 16 4 C -0.15 -5.07 4.81 -10.79 -0.05 -5.12 16 5 H 0.11 3.35 7.58 -2.39 -0.02 3.34 16 6 C -0.19 -6.34 9.48 30.62 0.29 -6.05 16 7 C -0.10 -2.64 2.63 -52.16 -0.14 -2.78 16 8 C -0.12 -3.03 8.29 71.98 0.60 -2.44 16 9 C -0.11 -2.04 9.85 71.98 0.71 -1.33 16 10 N -0.64 -30.38 2.76 -827.67 -2.29 -32.66 16 11 C 0.10 3.66 9.15 127.77 1.17 4.83 16 12 C 0.54 32.50 7.61 86.36 0.66 33.16 16 13 O -0.63 -44.21 14.35 -4.31 -0.06 -44.27 16 14 C -0.57 -33.16 8.74 24.83 0.22 -32.94 16 15 H 0.09 4.76 6.00 -2.91 -0.02 4.74 16 16 C 0.03 1.56 5.50 85.30 0.47 2.03 16 17 N -0.82 -51.94 11.83 21.83 0.26 -51.68 16 18 Si 1.00 41.80 29.56 68.60 2.03 43.83 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 22 H 0.07 2.01 6.58 -2.39 -0.02 1.99 16 23 H 0.09 2.36 4.84 -2.39 -0.01 2.35 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 3.01 8.05 -2.39 -0.02 2.99 16 26 H 0.06 2.44 8.09 -2.39 -0.02 2.42 16 27 H 0.08 1.73 5.90 -2.38 -0.01 1.72 16 28 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 29 H 0.03 1.02 7.07 -2.39 -0.02 1.00 16 30 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 31 H 0.07 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.31 6.39 -2.39 -0.02 2.29 16 35 H 0.06 2.38 6.09 -2.39 -0.01 2.37 16 36 H 0.27 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -77.37 286.42 5.67 -71.70 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.06 Total: 20.88 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.67 Total: -7.80 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.03 Total: -84.35 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.06 Total: -44.27 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -77.37 5.67 -71.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.532 kcal (2) G-P(sol) polarization free energy of solvation -77.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds