Wall clock time and date at job start Mon Mar 30 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47090 * 2 1 4 4 C 1.53005 * 109.47287 * 239.99444 * 2 1 3 5 5 H 1.08994 * 115.55018 * 277.97662 * 4 2 1 6 6 C 1.52995 * 117.49520 * 63.64166 * 4 2 1 7 7 C 1.52996 * 117.49617 * 132.26227 * 4 2 1 8 8 C 1.52998 * 117.50034 * 0.02562 * 7 4 2 9 9 C 1.53006 * 117.49735 * 145.02092 * 7 4 2 10 10 N 1.46503 * 109.46929 * 119.99997 * 2 1 3 11 11 C 1.46499 * 120.00404 * 59.99464 * 10 2 1 12 12 C 1.34780 * 119.99938 * 240.00484 * 10 2 1 13 13 O 1.21687 * 119.99801 * 359.97438 * 12 10 2 14 14 C 1.46374 * 120.00184 * 179.97438 * 12 10 2 15 15 H 1.08002 * 119.99999 * 6.52016 * 14 12 10 16 16 C 1.40042 * 119.99896 * 186.51984 * 14 12 10 17 17 N 1.30676 * 120.00082 * 175.24612 * 16 14 12 18 18 Si 1.86802 * 120.00327 * 355.24038 * 16 14 12 19 19 H 1.48507 * 109.46647 * 60.00366 * 18 16 14 20 20 H 1.48501 * 109.47142 * 300.00428 * 18 16 14 21 21 H 1.48498 * 109.47497 * 180.02562 * 18 16 14 22 22 H 1.08998 * 109.47661 * 294.81238 * 1 2 3 23 23 H 1.09000 * 109.47144 * 54.81639 * 1 2 3 24 24 H 1.09002 * 109.47052 * 174.81052 * 1 2 3 25 25 H 1.08996 * 117.49954 * 214.97424 * 6 4 2 26 26 H 1.08995 * 117.49977 * 359.97438 * 6 4 2 27 27 H 1.08999 * 109.47689 * 60.47014 * 8 7 4 28 28 H 1.08997 * 109.47434 * 180.47807 * 8 7 4 29 29 H 1.09001 * 109.46848 * 300.46854 * 8 7 4 30 30 H 1.09001 * 109.46814 * 59.99940 * 9 7 4 31 31 H 1.08998 * 109.47239 * 180.02562 * 9 7 4 32 32 H 1.08999 * 109.47039 * 300.00533 * 9 7 4 33 33 H 1.08997 * 109.47320 * 270.00662 * 11 10 2 34 34 H 1.09001 * 109.46877 * 30.00306 * 11 10 2 35 35 H 1.09002 * 109.47240 * 149.99891 * 11 10 2 36 36 H 0.97006 * 119.99733 * 3.21925 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 1 2.0681 -1.8091 -1.1854 6 6 1.7074 -0.1018 -2.6080 7 6 3.1360 -0.0325 -2.0647 8 6 3.6385 1.3247 -1.5683 9 6 4.1883 -0.9232 -2.7284 10 7 2.0183 -0.6906 1.1962 11 6 1.6643 -2.0932 1.4282 12 6 2.7931 -0.0356 2.0835 13 8 3.0873 1.1293 1.8907 14 6 3.2805 -0.7254 3.2789 15 1 3.1089 -1.7849 3.3987 16 6 3.9694 -0.0115 4.2673 17 7 4.3230 -0.6059 5.3760 18 14 4.3829 1.7906 4.0009 19 1 3.1291 2.5629 3.8087 20 1 5.2393 1.9291 2.7957 21 1 5.1093 2.3124 5.1864 22 1 -0.3634 0.4312 0.9327 23 1 -0.3633 0.5921 -0.8399 24 1 -0.3633 -1.0235 -0.0930 25 1 1.5172 -0.7819 -3.4382 26 1 1.1249 0.8194 -2.6120 27 1 4.0593 1.2131 -0.5691 28 1 4.4060 1.6981 -2.2462 29 1 2.8080 2.0300 -1.5362 30 1 3.6998 -1.6073 -3.4223 31 1 4.9004 -0.3017 -3.2711 32 1 4.7143 -1.4953 -1.9641 33 1 0.7374 -2.1443 1.9994 34 1 1.5294 -2.5969 0.4710 35 1 2.4628 -2.5819 1.9865 36 1 4.1500 -1.5530 5.4950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397765747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:48 Heat of formation + Delta-G solvation = -38.525277 kcal Electronic energy + Delta-G solvation = -16444.369862 eV Core-core repulsion = 13928.441553 eV Total energy + Delta-G solvation = -2515.928310 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25020 -37.44957 -34.47085 -32.88063 -30.83087 -28.41227 -27.28229 -26.11402 -25.87272 -23.47404 -20.40961 -19.16039 -18.19555 -17.36705 -15.90263 -15.32694 -14.48877 -14.18641 -13.83652 -13.53823 -13.31723 -12.87824 -12.55575 -12.37614 -12.16092 -11.94384 -11.82761 -11.75957 -11.58978 -11.56256 -11.14166 -10.99130 -10.32172 -10.23469 -10.09057 -9.75568 -9.15818 -9.10624 -8.89948 -7.87638 -7.52028 -6.95606 -4.88771 3.62134 3.70190 3.88679 4.08542 4.33978 4.37319 4.63384 4.85470 5.00132 5.18882 5.32415 5.49081 5.62941 5.67547 5.81450 5.83116 5.86698 5.89427 5.91493 6.05517 6.10506 6.21056 6.21628 6.28174 6.32604 6.43350 6.45506 6.58032 6.67475 6.78142 7.32893 7.78501 7.85934 8.17121 8.87524 9.01981 10.08036 10.36270 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.009392 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.247789 B = 2980.522969 C = 3277.742485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.102 0.898 4 C -0.149 4.149 5 H 0.099 0.901 6 C -0.172 4.172 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.111 4.111 10 N -0.628 5.628 11 C 0.102 3.898 12 C 0.555 3.445 13 O -0.616 6.616 14 C -0.596 4.596 15 H 0.075 0.925 16 C 0.059 3.941 17 N -0.834 5.834 18 Si 1.134 2.866 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.326 1.326 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 -1.731 -13.198 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.120 0.880 4 C -0.168 4.168 5 H 0.117 0.883 6 C -0.210 4.210 7 C -0.122 4.122 8 C -0.174 4.174 9 C -0.169 4.169 10 N -0.361 5.361 11 C -0.042 4.042 12 C 0.365 3.635 13 O -0.510 6.510 14 C -0.632 4.632 15 H 0.093 0.907 16 C -0.158 4.158 17 N -0.462 5.462 18 Si 0.968 3.032 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.258 1.258 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.829 0.034 -12.560 13.131 hybrid contribution -0.935 -1.925 -0.776 2.276 sum -4.764 -1.891 -13.336 14.287 Atomic orbital electron populations 1.22074 0.96366 1.01299 1.01411 1.20343 0.92457 0.97958 0.83171 0.88031 1.22854 1.02836 0.99077 0.92045 0.88283 1.23193 0.98410 1.02665 0.96724 1.21565 0.89911 0.98078 1.02679 1.21373 1.00547 0.93390 1.02085 1.21316 0.97573 0.98409 0.99561 1.47454 1.54409 1.11514 1.22745 1.21376 1.00088 0.83440 0.99323 1.18425 0.76842 0.85438 0.82784 1.90050 1.64430 1.18985 1.77511 1.22155 1.38881 0.97792 1.04388 0.90723 1.27174 0.89647 1.08677 0.90337 1.70680 1.38129 1.13465 1.23924 0.82289 0.76957 0.71685 0.72306 1.21521 1.21581 1.25808 0.92509 0.92643 0.93088 0.89402 0.89073 0.90498 0.92958 0.92711 0.92994 0.92442 0.92264 0.94752 0.93587 0.91132 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.93 37.16 0.33 -2.08 16 2 C 0.17 3.07 2.67 -67.93 -0.18 2.89 16 3 H 0.10 2.12 4.78 -51.93 -0.25 1.87 16 4 C -0.15 -2.35 4.82 -90.62 -0.44 -2.78 16 5 H 0.10 1.54 6.60 -51.93 -0.34 1.20 16 6 C -0.17 -2.25 9.15 -26.73 -0.24 -2.50 16 7 C -0.12 -1.84 2.70 -154.51 -0.42 -2.26 16 8 C -0.12 -1.92 8.37 37.16 0.31 -1.60 16 9 C -0.11 -1.47 9.85 37.16 0.37 -1.10 16 10 N -0.63 -13.72 2.76 -175.59 -0.48 -14.20 16 11 C 0.10 1.89 9.34 59.85 0.56 2.45 16 12 C 0.55 14.85 7.47 -12.99 -0.10 14.75 16 13 O -0.62 -17.54 11.13 5.20 0.06 -17.48 16 14 C -0.60 -16.87 9.19 -35.63 -0.33 -17.20 16 15 H 0.07 2.07 6.15 -52.49 -0.32 1.75 16 16 C 0.06 1.71 5.52 -17.37 -0.10 1.62 16 17 N -0.83 -24.29 13.65 55.55 0.76 -23.53 16 18 Si 1.13 30.40 25.81 -169.99 -4.39 26.02 16 19 H -0.29 -7.87 7.00 56.52 0.40 -7.47 16 20 H -0.29 -7.81 7.09 56.52 0.40 -7.41 16 21 H -0.33 -8.45 7.11 56.52 0.40 -8.05 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.75 7.72 -51.93 -0.40 0.35 16 24 H 0.05 0.73 7.84 -51.93 -0.41 0.32 16 25 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 26 H 0.09 1.15 7.81 -51.93 -0.41 0.74 16 27 H 0.08 1.56 7.76 -51.93 -0.40 1.15 16 28 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 29 H 0.05 0.86 7.33 -51.93 -0.38 0.48 16 30 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 31 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.71 6.41 -51.93 -0.33 0.38 16 35 H 0.07 1.40 6.02 -51.93 -0.31 1.08 16 36 H 0.28 7.71 8.72 -40.82 -0.36 7.36 16 LS Contribution 285.92 15.07 4.31 4.31 Total: -1.00 -30.82 285.92 -5.62 -36.43 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.63 Total: -3.72 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.23 Total: -7.82 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.27 Total: -37.74 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.06 Total: -17.48 kcal Atomic # 14 Polarization: 30.40 SS G_CDS: -4.39 Total: 26.02 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.82 -5.62 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.092 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds