Wall clock time and date at job start Mon Mar 30 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47090 * 2 1 4 4 C 1.53005 * 109.47287 * 239.99444 * 2 1 3 5 5 H 1.08994 * 115.55018 * 277.97662 * 4 2 1 6 6 C 1.52995 * 117.49520 * 63.64166 * 4 2 1 7 7 C 1.52996 * 117.49617 * 132.26227 * 4 2 1 8 8 C 1.52998 * 117.50034 * 0.02562 * 7 4 2 9 9 C 1.53006 * 117.49735 * 145.02092 * 7 4 2 10 10 N 1.46503 * 109.46929 * 119.99997 * 2 1 3 11 11 C 1.46499 * 120.00404 * 59.99464 * 10 2 1 12 12 C 1.34780 * 119.99938 * 240.00484 * 10 2 1 13 13 O 1.21687 * 119.99801 * 359.97438 * 12 10 2 14 14 C 1.46374 * 120.00184 * 179.97438 * 12 10 2 15 15 H 1.08002 * 119.99999 * 6.52016 * 14 12 10 16 16 C 1.40042 * 119.99896 * 186.51984 * 14 12 10 17 17 N 1.30676 * 120.00082 * 175.24612 * 16 14 12 18 18 Si 1.86802 * 120.00327 * 355.24038 * 16 14 12 19 19 H 1.48507 * 109.46647 * 60.00366 * 18 16 14 20 20 H 1.48501 * 109.47142 * 300.00428 * 18 16 14 21 21 H 1.48498 * 109.47497 * 180.02562 * 18 16 14 22 22 H 1.08998 * 109.47661 * 294.81238 * 1 2 3 23 23 H 1.09000 * 109.47144 * 54.81639 * 1 2 3 24 24 H 1.09002 * 109.47052 * 174.81052 * 1 2 3 25 25 H 1.08996 * 117.49954 * 214.97424 * 6 4 2 26 26 H 1.08995 * 117.49977 * 359.97438 * 6 4 2 27 27 H 1.08999 * 109.47689 * 60.47014 * 8 7 4 28 28 H 1.08997 * 109.47434 * 180.47807 * 8 7 4 29 29 H 1.09001 * 109.46848 * 300.46854 * 8 7 4 30 30 H 1.09001 * 109.46814 * 59.99940 * 9 7 4 31 31 H 1.08998 * 109.47239 * 180.02562 * 9 7 4 32 32 H 1.08999 * 109.47039 * 300.00533 * 9 7 4 33 33 H 1.08997 * 109.47320 * 270.00662 * 11 10 2 34 34 H 1.09001 * 109.46877 * 30.00306 * 11 10 2 35 35 H 1.09002 * 109.47240 * 149.99891 * 11 10 2 36 36 H 0.97006 * 119.99733 * 3.21925 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 1 2.0681 -1.8091 -1.1854 6 6 1.7074 -0.1018 -2.6080 7 6 3.1360 -0.0325 -2.0647 8 6 3.6385 1.3247 -1.5683 9 6 4.1883 -0.9232 -2.7284 10 7 2.0183 -0.6906 1.1962 11 6 1.6643 -2.0932 1.4282 12 6 2.7931 -0.0356 2.0835 13 8 3.0873 1.1293 1.8907 14 6 3.2805 -0.7254 3.2789 15 1 3.1089 -1.7849 3.3987 16 6 3.9694 -0.0115 4.2673 17 7 4.3230 -0.6059 5.3760 18 14 4.3829 1.7906 4.0009 19 1 3.1291 2.5629 3.8087 20 1 5.2393 1.9291 2.7957 21 1 5.1093 2.3124 5.1864 22 1 -0.3634 0.4312 0.9327 23 1 -0.3633 0.5921 -0.8399 24 1 -0.3633 -1.0235 -0.0930 25 1 1.5172 -0.7819 -3.4382 26 1 1.1249 0.8194 -2.6120 27 1 4.0593 1.2131 -0.5691 28 1 4.4060 1.6981 -2.2462 29 1 2.8080 2.0300 -1.5362 30 1 3.6998 -1.6073 -3.4223 31 1 4.9004 -0.3017 -3.2711 32 1 4.7143 -1.4953 -1.9641 33 1 0.7374 -2.1443 1.9994 34 1 1.5294 -2.5969 0.4710 35 1 2.4628 -2.5819 1.9865 36 1 4.1500 -1.5530 5.4950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397765747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:48 Heat of formation + Delta-G solvation = -57.505802 kcal Electronic energy + Delta-G solvation = -16445.192920 eV Core-core repulsion = 13928.441553 eV Total energy + Delta-G solvation = -2516.751367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76561 -39.11913 -36.21125 -35.09794 -32.29523 -29.63790 -28.44637 -28.15984 -27.46312 -24.87418 -22.02419 -20.73492 -19.56388 -19.34986 -17.73113 -17.04250 -16.06576 -15.70650 -15.58598 -15.14874 -14.72017 -14.62221 -14.07483 -13.95970 -13.74528 -13.36057 -13.30724 -13.09581 -13.05798 -12.70737 -12.64367 -12.43892 -12.34692 -12.11118 -11.49314 -11.28014 -11.12871 -10.91232 -10.34098 -10.00331 -9.28230 -9.18140 -7.10472 1.43605 1.52199 1.94686 2.20823 2.35200 2.62463 2.92052 3.30412 3.66819 3.84604 4.03687 4.19433 4.35321 4.37088 4.43448 4.47777 4.72558 4.73969 4.76404 4.83134 4.90144 4.90957 5.00449 5.03750 5.04656 5.11814 5.24336 5.32073 5.32945 5.45996 5.51962 5.57107 5.87359 6.23420 6.66292 7.05299 8.00649 8.12513 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.009392 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.247789 B = 2980.522969 C = 3277.742485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.163 4.163 5 H 0.106 0.894 6 C -0.136 4.136 7 C -0.141 4.141 8 C -0.112 4.112 9 C -0.108 4.108 10 N -0.628 5.628 11 C 0.101 3.899 12 C 0.549 3.451 13 O -0.639 6.639 14 C -0.613 4.613 15 H 0.073 0.927 16 C 0.028 3.972 17 N -0.850 5.850 18 Si 1.165 2.835 19 H -0.299 1.299 20 H -0.299 1.299 21 H -0.311 1.311 22 H 0.036 0.964 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -2.393 -15.667 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.056 3.944 3 H 0.090 0.910 4 C -0.183 4.183 5 H 0.124 0.876 6 C -0.174 4.174 7 C -0.141 4.141 8 C -0.169 4.169 9 C -0.165 4.165 10 N -0.359 5.359 11 C -0.042 4.042 12 C 0.357 3.643 13 O -0.534 6.534 14 C -0.650 4.650 15 H 0.092 0.908 16 C -0.186 4.186 17 N -0.479 5.479 18 Si 0.998 3.002 19 H -0.228 1.228 20 H -0.227 1.227 21 H -0.243 1.243 22 H 0.055 0.945 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.135 0.865 26 H 0.116 0.884 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.088 -0.658 -15.041 15.892 hybrid contribution -0.595 -1.736 -0.090 1.837 sum -5.683 -2.394 -15.131 16.339 Atomic orbital electron populations 1.22002 0.93872 1.02866 1.01549 1.20544 0.94338 0.96519 0.83043 0.90950 1.22722 1.04373 0.99122 0.92036 0.87574 1.23271 0.95931 1.02847 0.95321 1.21691 0.91528 0.97378 1.03511 1.21280 1.00919 0.94904 0.99796 1.21302 0.97341 0.98443 0.99378 1.47441 1.52924 1.12689 1.22832 1.21508 0.99714 0.81659 1.01367 1.18362 0.77385 0.85223 0.83361 1.90025 1.65275 1.19944 1.78155 1.22340 1.39343 0.97974 1.05317 0.90849 1.27753 0.89938 1.10301 0.90634 1.70683 1.39263 1.13666 1.24282 0.81846 0.76155 0.70015 0.72143 1.22759 1.22687 1.24250 0.94483 0.89976 0.91191 0.86460 0.88354 0.95309 0.91177 0.92736 0.90665 0.91479 0.94045 0.93754 0.89823 0.92860 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.93 71.98 0.64 -3.52 16 2 C 0.16 5.68 2.67 44.99 0.12 5.80 16 3 H 0.07 3.02 4.78 -2.39 -0.01 3.01 16 4 C -0.16 -4.69 4.82 -10.79 -0.05 -4.74 16 5 H 0.11 2.91 6.60 -2.39 -0.02 2.89 16 6 C -0.14 -2.97 9.15 30.59 0.28 -2.69 16 7 C -0.14 -3.91 2.70 -52.18 -0.14 -4.05 16 8 C -0.11 -3.62 8.37 71.98 0.60 -3.01 16 9 C -0.11 -2.55 9.85 71.98 0.71 -1.84 16 10 N -0.63 -27.04 2.76 -827.67 -2.29 -29.33 16 11 C 0.10 3.57 9.34 127.77 1.19 4.76 16 12 C 0.55 29.80 7.47 86.36 0.65 30.44 16 13 O -0.64 -37.23 11.13 -4.31 -0.05 -37.27 16 14 C -0.61 -35.29 9.19 24.83 0.23 -35.06 16 15 H 0.07 4.14 6.15 -2.91 -0.02 4.13 16 16 C 0.03 1.64 5.52 85.30 0.47 2.11 16 17 N -0.85 -50.01 13.65 21.83 0.30 -49.72 16 18 Si 1.17 62.97 25.81 68.60 1.77 64.74 16 19 H -0.30 -16.58 7.00 99.48 0.70 -15.88 16 20 H -0.30 -16.46 7.09 99.48 0.71 -15.76 16 21 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 22 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.08 1.92 7.72 -2.39 -0.02 1.90 16 24 H 0.07 1.74 7.84 -2.39 -0.02 1.73 16 25 H 0.12 1.95 8.05 -2.39 -0.02 1.93 16 26 H 0.10 2.04 7.81 -2.39 -0.02 2.02 16 27 H 0.03 1.19 7.76 -2.39 -0.02 1.17 16 28 H 0.07 1.93 7.93 -2.39 -0.02 1.91 16 29 H 0.05 1.70 7.33 -2.39 -0.02 1.68 16 30 H 0.07 1.42 7.90 -2.39 -0.02 1.40 16 31 H 0.07 1.44 7.93 -2.39 -0.02 1.42 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.33 6.41 -2.39 -0.02 2.31 16 35 H 0.05 2.08 6.02 -2.39 -0.01 2.06 16 36 H 0.28 15.68 8.72 -92.70 -0.81 14.87 16 Total: -1.00 -67.42 285.92 5.43 -61.99 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.00 Total: 1.40 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.70 Total: -11.81 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.99 Total: -79.04 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.05 Total: -37.27 kcal Atomic # 14 Polarization: 62.97 SS G_CDS: 1.77 Total: 64.74 kcal Total: -67.42 5.43 -61.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.480 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds