Wall clock time and date at job start Mon Mar 30 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43953 * 2 1 4 4 C 1.54630 * 110.48510 * 237.45421 * 2 1 3 5 5 C 1.54482 * 101.76426 * 216.52505 * 4 2 1 6 6 H 1.09001 * 110.24838 * 266.41727 * 5 4 2 7 7 C 1.53002 * 110.31784 * 144.45422 * 5 4 2 8 8 N 1.46766 * 105.47338 * 25.41966 * 5 4 2 9 9 C 1.46496 * 124.35015 * 162.98710 * 8 5 4 10 10 C 1.52997 * 109.47294 * 89.99301 * 9 8 5 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.34415 * 111.29913 * 343.24390 * 8 5 4 21 21 O 1.21281 * 124.94415 * 180.12831 * 20 8 5 22 22 H 1.08994 * 109.47091 * 182.54473 * 1 2 3 23 23 H 1.09001 * 109.46716 * 302.54795 * 1 2 3 24 24 H 1.08995 * 109.46787 * 62.54092 * 1 2 3 25 25 H 1.09006 * 110.97028 * 98.40666 * 4 2 1 26 26 H 1.09004 * 110.96965 * 334.64261 * 4 2 1 27 27 H 1.09005 * 109.47125 * 302.45453 * 7 5 4 28 28 H 1.09000 * 109.47142 * 62.45481 * 7 5 4 29 29 H 1.09000 * 109.47048 * 182.45786 * 7 5 4 30 30 H 1.09001 * 109.47059 * 329.99590 * 9 8 5 31 31 H 1.09004 * 109.47074 * 209.99546 * 9 8 5 32 32 H 1.09001 * 109.46832 * 60.00150 * 10 9 8 33 33 H 1.09001 * 109.47502 * 299.99672 * 10 9 8 34 34 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 35 35 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0712 -0.7793 -1.2210 5 6 3.3199 -1.4679 -0.6270 6 1 4.2059 -0.8573 -0.8006 7 6 3.5050 -2.8559 -1.2437 8 7 3.0562 -1.5828 0.8122 9 6 3.7858 -2.4738 1.7177 10 6 4.9975 -1.7369 2.2918 11 6 5.7591 -2.6673 3.2380 12 6 6.9529 -1.9417 3.8030 13 1 7.1486 -0.9190 3.5162 14 6 7.7947 -2.5830 4.6867 15 7 7.5562 -3.8281 5.0363 16 14 9.2741 -1.6832 5.3876 17 1 10.0134 -2.5863 6.3059 18 1 8.8161 -0.4841 6.1344 19 1 10.1693 -1.2641 4.2794 20 6 2.0556 -0.7695 1.1917 21 8 1.6369 -0.6655 2.3252 22 1 -0.3633 -1.0266 0.0456 23 1 -0.3633 0.5529 0.8663 24 1 -0.3633 0.4739 -0.9119 25 1 2.3471 -0.0991 -2.0269 26 1 1.3461 -1.5165 -1.5659 27 1 2.6096 -3.4529 -1.0704 28 1 3.6742 -2.7574 -2.3160 29 1 4.3631 -3.3462 -0.7840 30 1 4.1222 -3.3535 1.1689 31 1 3.1291 -2.7822 2.5312 32 1 4.6612 -0.8572 2.8406 33 1 5.6543 -1.4286 1.4783 34 1 6.0954 -3.5472 2.6895 35 1 5.1022 -2.9752 4.0514 36 1 6.7877 -4.2953 4.6727 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399497124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:31 Heat of formation + Delta-G solvation = -64.473556 kcal Electronic energy + Delta-G solvation = -15715.000152 eV Core-core repulsion = 13197.946641 eV Total energy + Delta-G solvation = -2517.053511 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54406 -36.60963 -35.11051 -33.40408 -31.64116 -30.44036 -27.61143 -25.94491 -23.70956 -22.90574 -21.30957 -20.53234 -18.77334 -17.14430 -16.70212 -15.90144 -14.90973 -14.44011 -14.25009 -13.82427 -13.69506 -13.50021 -13.02075 -12.96747 -12.45019 -12.30166 -11.96021 -11.85207 -11.48418 -11.37850 -11.25081 -11.04979 -10.77998 -10.69547 -10.11808 -9.89892 -9.81865 -9.42181 -8.70286 -8.29796 -8.29040 -6.33232 -4.01883 2.79987 3.19627 3.45854 3.48541 3.66992 4.24562 4.34214 4.55445 4.57767 4.91600 5.11849 5.13912 5.23795 5.37173 5.43774 5.49613 5.56647 5.59693 5.72832 5.75247 5.83227 5.90490 6.02598 6.09024 6.09696 6.43001 6.51843 6.89970 6.96692 7.36853 7.41502 7.56674 8.24412 8.41090 8.49229 8.91745 9.70081 11.07438 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042506 B = 0.005485 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.566039 B = 5103.274560 C = 5335.983545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 H 0.106 0.894 4 C -0.124 4.124 5 C 0.125 3.875 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.610 5.610 9 C 0.121 3.879 10 C -0.115 4.115 11 C 0.011 3.989 12 C -0.600 4.600 13 H 0.047 0.953 14 C 0.014 3.986 15 N -0.914 5.914 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.515 3.485 21 O -0.531 6.531 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.007 0.993 35 H 0.009 0.991 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 4.930 -15.841 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.149 4.149 3 H 0.124 0.876 4 C -0.162 4.162 5 C 0.021 3.979 6 H 0.098 0.902 7 C -0.218 4.218 8 N -0.344 5.344 9 C 0.000 4.000 10 C -0.154 4.154 11 C -0.027 4.027 12 C -0.639 4.639 13 H 0.066 0.934 14 C -0.189 4.189 15 N -0.550 5.550 16 Si 0.897 3.103 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.215 1.215 20 C 0.302 3.698 21 O -0.408 6.408 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.027 0.973 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.993 4.749 -14.168 17.976 hybrid contribution -1.169 0.197 -1.090 1.610 sum -11.162 4.945 -15.258 19.541 Atomic orbital electron populations 1.21598 0.92477 1.02480 1.02388 1.21966 0.98095 1.00638 0.94251 0.87598 1.22805 0.96799 0.99506 0.97067 1.21667 0.98185 0.97557 0.80469 0.90220 1.22095 1.02848 0.95992 1.00889 1.48518 1.35039 1.41996 1.08815 1.21698 0.94188 0.91944 0.92149 1.21847 0.94650 0.99731 0.99161 1.19169 0.95153 0.94675 0.93706 1.22030 1.11406 1.00556 1.29871 0.93442 1.25857 1.01779 0.96410 0.94894 1.70783 1.29873 1.10719 1.43612 0.83544 0.75333 0.75071 0.76308 1.20734 1.21449 1.21489 1.20782 0.79534 0.80019 0.89508 1.90711 1.61621 1.66498 1.21940 0.92465 0.91607 0.91833 0.89398 0.89900 0.92086 0.91193 0.91484 0.90727 0.90545 0.92884 0.93147 0.97460 0.97313 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.06 37.16 0.34 -0.95 16 2 C -0.13 -1.44 3.54 -90.63 -0.32 -1.76 16 3 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.12 -1.07 6.21 -25.10 -0.16 -1.23 16 5 C 0.13 1.41 3.91 -67.01 -0.26 1.15 16 6 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.16 -1.57 8.78 37.16 0.33 -1.24 16 8 N -0.61 -9.50 2.78 -164.88 -0.46 -9.96 16 9 C 0.12 2.19 5.72 -4.05 -0.02 2.17 16 10 C -0.12 -2.53 5.48 -26.73 -0.15 -2.68 16 11 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 12 C -0.60 -17.77 9.11 -34.44 -0.31 -18.09 16 13 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 14 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 15 N -0.91 -28.66 13.65 55.43 0.76 -27.91 16 16 Si 1.07 25.99 29.90 -169.99 -5.08 20.90 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.51 8.50 7.44 -10.86 -0.08 8.42 16 21 O -0.53 -11.13 17.42 5.56 0.10 -11.04 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.64 7.68 -51.93 -0.40 0.24 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.75 6.95 -51.93 -0.36 0.39 16 30 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 31 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 35 H 0.01 0.24 8.01 -51.93 -0.42 -0.17 16 36 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -34.35 295.45 -7.15 -41.50 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -6.06 Total: -4.23 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.86 Total: -13.72 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.30 Total: -37.87 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.10 Total: -11.04 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.35 -7.15 -41.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399497124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.971 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds