Wall clock time and date at job start Mon Mar 30 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43953 * 2 1 4 4 C 1.54630 * 110.48510 * 237.45421 * 2 1 3 5 5 C 1.54482 * 101.76426 * 216.52505 * 4 2 1 6 6 H 1.09001 * 110.24838 * 266.41727 * 5 4 2 7 7 C 1.53002 * 110.31784 * 144.45422 * 5 4 2 8 8 N 1.46766 * 105.47338 * 25.41966 * 5 4 2 9 9 C 1.46496 * 124.35015 * 162.98710 * 8 5 4 10 10 C 1.52997 * 109.47294 * 89.99301 * 9 8 5 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.34415 * 111.29913 * 343.24390 * 8 5 4 21 21 O 1.21281 * 124.94415 * 180.12831 * 20 8 5 22 22 H 1.08994 * 109.47091 * 182.54473 * 1 2 3 23 23 H 1.09001 * 109.46716 * 302.54795 * 1 2 3 24 24 H 1.08995 * 109.46787 * 62.54092 * 1 2 3 25 25 H 1.09006 * 110.97028 * 98.40666 * 4 2 1 26 26 H 1.09004 * 110.96965 * 334.64261 * 4 2 1 27 27 H 1.09005 * 109.47125 * 302.45453 * 7 5 4 28 28 H 1.09000 * 109.47142 * 62.45481 * 7 5 4 29 29 H 1.09000 * 109.47048 * 182.45786 * 7 5 4 30 30 H 1.09001 * 109.47059 * 329.99590 * 9 8 5 31 31 H 1.09004 * 109.47074 * 209.99546 * 9 8 5 32 32 H 1.09001 * 109.46832 * 60.00150 * 10 9 8 33 33 H 1.09001 * 109.47502 * 299.99672 * 10 9 8 34 34 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 35 35 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0712 -0.7793 -1.2210 5 6 3.3199 -1.4679 -0.6270 6 1 4.2059 -0.8573 -0.8006 7 6 3.5050 -2.8559 -1.2437 8 7 3.0562 -1.5828 0.8122 9 6 3.7858 -2.4738 1.7177 10 6 4.9975 -1.7369 2.2918 11 6 5.7591 -2.6673 3.2380 12 6 6.9529 -1.9417 3.8030 13 1 7.1486 -0.9190 3.5162 14 6 7.7947 -2.5830 4.6867 15 7 7.5562 -3.8281 5.0363 16 14 9.2741 -1.6832 5.3876 17 1 10.0134 -2.5863 6.3059 18 1 8.8161 -0.4841 6.1344 19 1 10.1693 -1.2641 4.2794 20 6 2.0556 -0.7695 1.1917 21 8 1.6369 -0.6655 2.3252 22 1 -0.3633 -1.0266 0.0456 23 1 -0.3633 0.5529 0.8663 24 1 -0.3633 0.4739 -0.9119 25 1 2.3471 -0.0991 -2.0269 26 1 1.3461 -1.5165 -1.5659 27 1 2.6096 -3.4529 -1.0704 28 1 3.6742 -2.7574 -2.3160 29 1 4.3631 -3.3462 -0.7840 30 1 4.1222 -3.3535 1.1689 31 1 3.1291 -2.7822 2.5312 32 1 4.6612 -0.8572 2.8406 33 1 5.6543 -1.4286 1.4783 34 1 6.0954 -3.5472 2.6895 35 1 5.1022 -2.9752 4.0514 36 1 6.7877 -4.2953 4.6727 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399497124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:30 Heat of formation + Delta-G solvation = -86.417811 kcal Electronic energy + Delta-G solvation = -15715.951727 eV Core-core repulsion = 13197.946641 eV Total energy + Delta-G solvation = -2518.005086 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.69331 -37.91628 -36.81429 -35.08560 -33.09641 -31.73626 -28.93271 -27.31871 -25.31440 -24.23781 -22.80734 -21.90889 -20.00070 -18.97268 -18.05602 -17.32175 -16.25307 -15.78917 -15.65634 -15.33897 -15.18029 -15.02419 -14.49869 -13.92839 -13.70232 -13.33858 -13.25098 -13.16877 -12.85597 -12.67117 -12.59028 -12.52132 -12.05759 -11.96275 -11.83695 -11.73086 -11.58338 -10.85055 -10.69118 -10.58717 -9.73599 -8.73693 -6.44622 1.49585 1.53454 1.58676 1.78528 1.99174 2.54103 3.11294 3.28481 3.51974 3.79002 3.94082 4.09670 4.11331 4.30216 4.35645 4.38854 4.46258 4.56895 4.69425 4.77341 4.83614 4.87567 4.88359 4.97754 5.09776 5.15850 5.25715 5.28899 5.34249 5.38992 5.59061 5.93960 6.12130 6.18848 6.52216 7.13158 7.37247 8.66980 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042506 B = 0.005485 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.566039 B = 5103.274560 C = 5335.983545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 H 0.120 0.880 4 C -0.107 4.107 5 C 0.114 3.886 6 H 0.085 0.915 7 C -0.157 4.157 8 N -0.613 5.613 9 C 0.131 3.869 10 C -0.097 4.097 11 C 0.012 3.988 12 C -0.623 4.623 13 H 0.047 0.953 14 C -0.038 4.038 15 N -0.935 5.935 16 Si 1.119 2.881 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.264 1.264 20 C 0.496 3.504 21 O -0.590 6.590 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.002 0.998 35 H -0.017 1.017 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 6.104 -18.554 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 H 0.137 0.863 4 C -0.144 4.144 5 C 0.012 3.988 6 H 0.103 0.897 7 C -0.214 4.214 8 N -0.345 5.345 9 C 0.009 3.991 10 C -0.136 4.136 11 C -0.026 4.026 12 C -0.661 4.661 13 H 0.065 0.935 14 C -0.235 4.235 15 N -0.572 5.572 16 Si 0.940 3.060 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.189 1.189 20 C 0.285 3.715 21 O -0.471 6.471 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.020 0.980 35 H 0.001 0.999 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.808 5.922 -16.948 20.457 hybrid contribution -1.254 -0.187 -0.258 1.294 sum -11.062 5.735 -17.206 21.244 Atomic orbital electron populations 1.21613 0.91353 1.02289 1.03379 1.22041 0.98919 1.00676 0.92540 0.86252 1.22870 0.95303 0.99809 0.96419 1.22080 0.99978 0.99062 0.77725 0.89708 1.22089 1.02059 0.94724 1.02557 1.48677 1.34275 1.41024 1.10561 1.21319 0.92475 0.92742 0.92588 1.21590 0.95840 0.97985 0.98179 1.19098 0.94524 0.95194 0.93773 1.22461 1.12479 1.00819 1.30326 0.93506 1.27510 1.04689 0.96367 0.94959 1.70918 1.29873 1.11813 1.44580 0.82923 0.72236 0.74347 0.76538 1.20485 1.19861 1.18926 1.21932 0.79244 0.80005 0.90280 1.90666 1.63400 1.68296 1.24769 0.93035 0.93457 0.88208 0.85637 0.88346 0.92073 0.88019 0.93293 0.88660 0.92918 0.95352 0.92118 0.97959 0.99884 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.06 71.98 0.65 -1.58 16 2 C -0.12 -2.41 3.54 -10.80 -0.04 -2.45 16 3 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.11 -1.38 6.21 31.65 0.20 -1.18 16 5 C 0.11 2.25 3.91 45.45 0.18 2.42 16 6 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.16 -2.61 8.78 71.98 0.63 -1.97 16 8 N -0.61 -18.81 2.78 -794.17 -2.21 -21.02 16 9 C 0.13 4.88 5.72 86.38 0.49 5.37 16 10 C -0.10 -4.38 5.48 30.60 0.17 -4.22 16 11 C 0.01 0.64 4.28 29.85 0.13 0.77 16 12 C -0.62 -37.52 9.11 25.60 0.23 -37.29 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 14 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 15 N -0.93 -59.73 13.65 21.45 0.29 -59.44 16 16 Si 1.12 51.79 29.90 68.60 2.05 53.84 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 20 C 0.50 16.41 7.44 87.90 0.65 17.06 16 21 O -0.59 -25.92 17.42 -3.03 -0.05 -25.97 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.10 1.03 7.68 -2.38 -0.02 1.02 16 27 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.00 6.95 -2.39 -0.02 0.98 16 30 H 0.10 3.13 6.43 -2.39 -0.02 3.11 16 31 H 0.05 2.19 7.92 -2.38 -0.02 2.18 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.00 0.12 8.01 -2.39 -0.02 0.10 16 35 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 36 H 0.26 16.49 7.22 -92.71 -0.67 15.82 16 Total: -1.00 -77.92 295.45 4.97 -72.95 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.13 Total: 4.52 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.76 Total: -24.88 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.92 Total: -80.47 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -77.92 4.97 -72.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399497124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.465 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds