Wall clock time and date at job start Mon Mar 30 2020 02:48:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 110.53845 * 2 1
4 4 C 1.51276 * 110.48951 * 122.61891 * 2 1 3
5 5 O 1.21289 * 124.93817 * 282.38732 * 4 2 1
6 6 N 1.34418 * 110.12105 * 102.42138 * 4 2 1
7 7 C 1.46497 * 124.35219 * 179.56786 * 6 4 2
8 8 C 1.53003 * 109.46917 * 90.02926 * 7 6 4
9 9 C 1.53000 * 109.47247 * 180.02562 * 8 7 6
10 10 C 1.50699 * 109.46883 * 179.97438 * 9 8 7
11 11 H 1.07998 * 120.00769 * 359.97438 * 10 9 8
12 12 C 1.37882 * 119.99558 * 179.97438 * 10 9 8
13 13 N 1.31506 * 120.00175 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 119.99726 * 179.97438 * 12 10 9
15 15 H 1.48502 * 109.47405 * 90.00005 * 14 12 10
16 16 H 1.48506 * 109.47014 * 210.00141 * 14 12 10
17 17 H 1.48500 * 109.47319 * 329.99632 * 14 12 10
18 18 C 1.46767 * 111.29675 * 359.59228 * 6 4 2
19 19 C 1.54481 * 105.47391 * 17.01830 * 18 6 4
20 20 H 1.09002 * 110.97229 * 92.70050 * 19 18 6
21 21 C 1.53001 * 110.99718 * 216.45148 * 19 18 6
22 22 H 1.09001 * 109.47371 * 182.61380 * 1 2 3
23 23 H 1.09003 * 109.46908 * 302.60850 * 1 2 3
24 24 H 1.08994 * 109.47295 * 62.60975 * 1 2 3
25 25 H 1.08998 * 109.47211 * 210.02724 * 7 6 4
26 26 H 1.08993 * 109.47242 * 330.03212 * 7 6 4
27 27 H 1.09009 * 109.46619 * 300.00113 * 8 7 6
28 28 H 1.09000 * 109.47207 * 59.99492 * 8 7 6
29 29 H 1.09005 * 109.46709 * 299.99445 * 9 8 7
30 30 H 1.08996 * 109.47161 * 59.99551 * 9 8 7
31 31 H 0.97002 * 120.00226 * 179.97438 * 13 12 10
32 32 H 1.08997 * 110.24641 * 258.01045 * 18 6 4
33 33 H 1.09003 * 110.24346 * 136.01145 * 18 6 4
34 34 H 1.09007 * 109.46868 * 175.48674 * 21 19 18
35 35 H 1.08997 * 109.47220 * 295.47999 * 21 19 18
36 36 H 1.08990 * 109.47468 * 55.48568 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9124 1.0208 0.0000
4 6 2.0595 -0.7639 1.1935
5 8 2.1029 -0.3369 2.3280
6 7 2.4757 -1.9843 0.8139
7 6 3.0536 -2.9796 1.7203
8 6 1.9381 -3.8559 2.2935
9 6 2.5416 -4.8951 3.2406
10 6 1.4427 -5.7577 3.8057
11 1 0.4165 -5.5822 3.5185
12 6 1.7475 -6.7712 4.6895
13 7 2.9970 -6.9847 5.0397
14 14 0.3854 -7.8401 5.3905
15 1 0.1714 -9.0131 4.5054
16 1 0.7708 -8.3070 6.7466
17 1 -0.8690 -7.0500 5.4772
18 6 2.2772 -2.1914 -0.6255
19 6 2.0711 -0.7806 -1.2202
20 1 3.0162 -0.3604 -1.5643
21 6 1.0426 -0.8079 -2.3527
22 1 -0.3634 -1.0266 0.0469
23 1 -0.3633 0.5538 0.8657
24 1 -0.3633 0.4727 -0.9124
25 1 3.7602 -3.6031 1.1724
26 1 3.5717 -2.4725 2.5341
27 1 1.2316 -3.2323 2.8414
28 1 1.4199 -4.3631 1.4797
29 1 3.2483 -5.5186 2.6930
30 1 3.0595 -4.3875 4.0544
31 1 3.2114 -7.6974 5.6617
32 1 1.3947 -2.8069 -0.7998
33 1 3.1579 -2.6606 -1.0640
34 1 0.8572 0.2086 -2.6997
35 1 1.4260 -1.4090 -3.1772
36 1 0.1121 -1.2428 -1.9881
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000399570077.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:48:54
Heat of formation + Delta-G solvation = -59.114923 kcal
Electronic energy + Delta-G solvation = -15648.265261 eV
Core-core repulsion = 13131.444117 eV
Total energy + Delta-G solvation = -2516.821144 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.55754 -36.61796 -35.27901 -33.28233 -31.29807 -30.14069 -27.66746 -25.61322
-25.18192 -23.07635 -20.50358 -20.03564 -19.06449 -16.75609 -16.19995 -15.80890
-15.39138 -14.69293 -14.41855 -13.98774 -13.70215 -13.27574 -12.97875 -12.71429
-12.37583 -12.28891 -11.95544 -11.86308 -11.69371 -11.32246 -10.93229 -10.80613
-10.76272 -10.67337 -10.56328 -9.73612 -9.61949 -9.29146 -9.14326 -8.33245
-8.31123 -5.98167 -4.00338 2.83390 3.28162 3.33352 3.39522 3.43881
4.25364 4.33606 4.48118 4.58497 4.88094 5.19202 5.22093 5.30848
5.37637 5.42876 5.48659 5.55393 5.67374 5.71152 5.78121 5.88629
5.91534 6.00272 6.16064 6.18112 6.52101 6.62877 7.00948 7.11225
7.42390 7.67695 7.82658 8.01082 8.41694 8.47369 9.06028 9.63481
11.13248
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.041824 B = 0.005270 C = 0.005217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 669.318940 B = 5312.116950 C = 5365.604532
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.123 4.123
3 H 0.100 0.900
4 C 0.515 3.485
5 O -0.532 6.532
6 N -0.614 5.614
7 C 0.123 3.877
8 C -0.123 4.123
9 C 0.023 3.977
10 C -0.519 4.519
11 H 0.054 0.946
12 C 0.057 3.943
13 N -0.896 5.896
14 Si 0.892 3.108
15 H -0.281 1.281
16 H -0.286 1.286
17 H -0.274 1.274
18 C 0.105 3.895
19 C -0.103 4.103
20 H 0.088 0.912
21 C -0.143 4.143
22 H 0.061 0.939
23 H 0.062 0.938
24 H 0.069 0.931
25 H 0.074 0.926
26 H 0.078 0.922
27 H 0.051 0.949
28 H 0.048 0.952
29 H 0.017 0.983
30 H 0.018 0.982
31 H 0.260 0.740
32 H 0.072 0.928
33 H 0.077 0.923
34 H 0.061 0.939
35 H 0.059 0.941
36 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.219 11.912 -15.882 19.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.144 4.144
3 H 0.119 0.881
4 C 0.302 3.698
5 O -0.409 6.409
6 N -0.347 5.347
7 C 0.002 3.998
8 C -0.161 4.161
9 C -0.014 4.014
10 C -0.557 4.557
11 H 0.072 0.928
12 C -0.144 4.144
13 N -0.535 5.535
14 Si 0.720 3.280
15 H -0.207 1.207
16 H -0.212 1.212
17 H -0.199 1.199
18 C -0.019 4.019
19 C -0.121 4.121
20 H 0.106 0.894
21 C -0.200 4.200
22 H 0.080 0.920
23 H 0.081 0.919
24 H 0.088 0.912
25 H 0.092 0.908
26 H 0.096 0.904
27 H 0.070 0.930
28 H 0.067 0.933
29 H 0.035 0.965
30 H 0.036 0.964
31 H 0.070 0.930
32 H 0.090 0.910
33 H 0.095 0.905
34 H 0.080 0.920
35 H 0.078 0.922
36 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -2.039 11.953 -15.109 19.373
hybrid contribution -0.607 -0.793 0.428 1.087
sum -2.646 11.160 -14.681 18.630
Atomic orbital electron populations
1.21684 0.92300 1.02728 1.02550 1.21996 0.98122 1.00468 0.93837
0.88142 1.20786 0.77240 0.82256 0.89513 1.90718 1.55989 1.72231
1.21962 1.48461 1.61824 1.15365 1.09050 1.21716 0.96582 0.89276
0.92233 1.21989 0.97124 0.97596 0.99403 1.19046 0.96244 0.92502
0.93640 1.21221 0.93623 1.14905 1.25984 0.92773 1.25018 0.95437
0.97500 0.96482 1.69960 1.17312 1.31873 1.34374 0.86589 0.82327
0.80663 0.78398 1.20677 1.21181 1.19892 1.22165 1.02139 0.96932
0.80627 1.22207 1.00027 0.95040 0.94873 0.89357 1.21829 0.98797
1.02188 0.97192 0.92025 0.91916 0.91211 0.90810 0.90374 0.93023
0.93311 0.96514 0.96374 0.93001 0.91014 0.90506 0.92004 0.92179
0.91603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.38 7.98 37.16 0.30 -1.08 16
2 C -0.12 -1.39 3.45 -90.63 -0.31 -1.70 16
3 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16
4 C 0.52 8.56 7.35 -10.86 -0.08 8.48 16
5 O -0.53 -11.28 17.60 5.55 0.10 -11.18 16
6 N -0.61 -9.59 2.93 -172.42 -0.51 -10.10 16
7 C 0.12 2.22 5.93 -4.04 -0.02 2.20 16
8 C -0.12 -2.66 5.48 -26.73 -0.15 -2.80 16
9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16
10 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16
11 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16
12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
13 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16
14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16
15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
18 C 0.10 1.17 6.91 -3.12 -0.02 1.15 16
19 C -0.10 -0.91 3.66 -88.98 -0.33 -1.24 16
20 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
21 C -0.14 -0.95 7.97 37.16 0.30 -0.66 16
22 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16
23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.07 0.52 6.80 -51.93 -0.35 0.17 16
25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
26 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16
27 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16
28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
32 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16
33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16
35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
36 H 0.06 0.46 6.52 -51.93 -0.34 0.12 16
LS Contribution 295.19 15.07 4.45 4.45
Total: -1.00 -33.54 295.19 -7.20 -40.74
By element:
Atomic # 1 Polarization: 0.80 SS G_CDS: -6.09 Total: -5.29 kcal
Atomic # 6 Polarization: -8.19 SS G_CDS: -0.87 Total: -9.05 kcal
Atomic # 7 Polarization: -36.97 SS G_CDS: 0.23 Total: -36.74 kcal
Atomic # 8 Polarization: -11.28 SS G_CDS: 0.10 Total: -11.18 kcal
Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -33.54 -7.20 -40.74 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000399570077.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.373 kcal
(2) G-P(sol) polarization free energy of solvation -33.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds