Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.53845 * 2 1 4 4 C 1.51276 * 110.48951 * 122.61891 * 2 1 3 5 5 O 1.21289 * 124.93817 * 282.38732 * 4 2 1 6 6 N 1.34418 * 110.12105 * 102.42138 * 4 2 1 7 7 C 1.46497 * 124.35219 * 179.56786 * 6 4 2 8 8 C 1.53003 * 109.46917 * 90.02926 * 7 6 4 9 9 C 1.53000 * 109.47247 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46883 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00769 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99558 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00175 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99726 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47405 * 90.00005 * 14 12 10 16 16 H 1.48506 * 109.47014 * 210.00141 * 14 12 10 17 17 H 1.48500 * 109.47319 * 329.99632 * 14 12 10 18 18 C 1.46767 * 111.29675 * 359.59228 * 6 4 2 19 19 C 1.54481 * 105.47391 * 17.01830 * 18 6 4 20 20 H 1.09002 * 110.97229 * 92.70050 * 19 18 6 21 21 C 1.53001 * 110.99718 * 216.45148 * 19 18 6 22 22 H 1.09001 * 109.47371 * 182.61380 * 1 2 3 23 23 H 1.09003 * 109.46908 * 302.60850 * 1 2 3 24 24 H 1.08994 * 109.47295 * 62.60975 * 1 2 3 25 25 H 1.08998 * 109.47211 * 210.02724 * 7 6 4 26 26 H 1.08993 * 109.47242 * 330.03212 * 7 6 4 27 27 H 1.09009 * 109.46619 * 300.00113 * 8 7 6 28 28 H 1.09000 * 109.47207 * 59.99492 * 8 7 6 29 29 H 1.09005 * 109.46709 * 299.99445 * 9 8 7 30 30 H 1.08996 * 109.47161 * 59.99551 * 9 8 7 31 31 H 0.97002 * 120.00226 * 179.97438 * 13 12 10 32 32 H 1.08997 * 110.24641 * 258.01045 * 18 6 4 33 33 H 1.09003 * 110.24346 * 136.01145 * 18 6 4 34 34 H 1.09007 * 109.46868 * 175.48674 * 21 19 18 35 35 H 1.08997 * 109.47220 * 295.47999 * 21 19 18 36 36 H 1.08990 * 109.47468 * 55.48568 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0595 -0.7639 1.1935 5 8 2.1029 -0.3369 2.3280 6 7 2.4757 -1.9843 0.8139 7 6 3.0536 -2.9796 1.7203 8 6 1.9381 -3.8559 2.2935 9 6 2.5416 -4.8951 3.2406 10 6 1.4427 -5.7577 3.8057 11 1 0.4165 -5.5822 3.5185 12 6 1.7475 -6.7712 4.6895 13 7 2.9970 -6.9847 5.0397 14 14 0.3854 -7.8401 5.3905 15 1 0.1714 -9.0131 4.5054 16 1 0.7708 -8.3070 6.7466 17 1 -0.8690 -7.0500 5.4772 18 6 2.2772 -2.1914 -0.6255 19 6 2.0711 -0.7806 -1.2202 20 1 3.0162 -0.3604 -1.5643 21 6 1.0426 -0.8079 -2.3527 22 1 -0.3634 -1.0266 0.0469 23 1 -0.3633 0.5538 0.8657 24 1 -0.3633 0.4727 -0.9124 25 1 3.7602 -3.6031 1.1724 26 1 3.5717 -2.4725 2.5341 27 1 1.2316 -3.2323 2.8414 28 1 1.4199 -4.3631 1.4797 29 1 3.2483 -5.5186 2.6930 30 1 3.0595 -4.3875 4.0544 31 1 3.2114 -7.6974 5.6617 32 1 1.3947 -2.8069 -0.7998 33 1 3.1579 -2.6606 -1.0640 34 1 0.8572 0.2086 -2.6997 35 1 1.4260 -1.4090 -3.1772 36 1 0.1121 -1.2428 -1.9881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399570077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -59.114923 kcal Electronic energy + Delta-G solvation = -15648.265261 eV Core-core repulsion = 13131.444117 eV Total energy + Delta-G solvation = -2516.821144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55754 -36.61796 -35.27901 -33.28233 -31.29807 -30.14069 -27.66746 -25.61322 -25.18192 -23.07635 -20.50358 -20.03564 -19.06449 -16.75609 -16.19995 -15.80890 -15.39138 -14.69293 -14.41855 -13.98774 -13.70215 -13.27574 -12.97875 -12.71429 -12.37583 -12.28891 -11.95544 -11.86308 -11.69371 -11.32246 -10.93229 -10.80613 -10.76272 -10.67337 -10.56328 -9.73612 -9.61949 -9.29146 -9.14326 -8.33245 -8.31123 -5.98167 -4.00338 2.83390 3.28162 3.33352 3.39522 3.43881 4.25364 4.33606 4.48118 4.58497 4.88094 5.19202 5.22093 5.30848 5.37637 5.42876 5.48659 5.55393 5.67374 5.71152 5.78121 5.88629 5.91534 6.00272 6.16064 6.18112 6.52101 6.62877 7.00948 7.11225 7.42390 7.67695 7.82658 8.01082 8.41694 8.47369 9.06028 9.63481 11.13248 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041824 B = 0.005270 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.318940 B = 5312.116950 C = 5365.604532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 H 0.100 0.900 4 C 0.515 3.485 5 O -0.532 6.532 6 N -0.614 5.614 7 C 0.123 3.877 8 C -0.123 4.123 9 C 0.023 3.977 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.105 3.895 19 C -0.103 4.103 20 H 0.088 0.912 21 C -0.143 4.143 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 11.912 -15.882 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 H 0.119 0.881 4 C 0.302 3.698 5 O -0.409 6.409 6 N -0.347 5.347 7 C 0.002 3.998 8 C -0.161 4.161 9 C -0.014 4.014 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.019 4.019 19 C -0.121 4.121 20 H 0.106 0.894 21 C -0.200 4.200 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.039 11.953 -15.109 19.373 hybrid contribution -0.607 -0.793 0.428 1.087 sum -2.646 11.160 -14.681 18.630 Atomic orbital electron populations 1.21684 0.92300 1.02728 1.02550 1.21996 0.98122 1.00468 0.93837 0.88142 1.20786 0.77240 0.82256 0.89513 1.90718 1.55989 1.72231 1.21962 1.48461 1.61824 1.15365 1.09050 1.21716 0.96582 0.89276 0.92233 1.21989 0.97124 0.97596 0.99403 1.19046 0.96244 0.92502 0.93640 1.21221 0.93623 1.14905 1.25984 0.92773 1.25018 0.95437 0.97500 0.96482 1.69960 1.17312 1.31873 1.34374 0.86589 0.82327 0.80663 0.78398 1.20677 1.21181 1.19892 1.22165 1.02139 0.96932 0.80627 1.22207 1.00027 0.95040 0.94873 0.89357 1.21829 0.98797 1.02188 0.97192 0.92025 0.91916 0.91211 0.90810 0.90374 0.93023 0.93311 0.96514 0.96374 0.93001 0.91014 0.90506 0.92004 0.92179 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.98 37.16 0.30 -1.08 16 2 C -0.12 -1.39 3.45 -90.63 -0.31 -1.70 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.52 8.56 7.35 -10.86 -0.08 8.48 16 5 O -0.53 -11.28 17.60 5.55 0.10 -11.18 16 6 N -0.61 -9.59 2.93 -172.42 -0.51 -10.10 16 7 C 0.12 2.22 5.93 -4.04 -0.02 2.20 16 8 C -0.12 -2.66 5.48 -26.73 -0.15 -2.80 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.10 1.17 6.91 -3.12 -0.02 1.15 16 19 C -0.10 -0.91 3.66 -88.98 -0.33 -1.24 16 20 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.14 -0.95 7.97 37.16 0.30 -0.66 16 22 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.52 6.80 -51.93 -0.35 0.17 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16 27 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.46 6.52 -51.93 -0.34 0.12 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -33.54 295.19 -7.20 -40.74 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -6.09 Total: -5.29 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.87 Total: -9.05 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.23 Total: -36.74 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.10 Total: -11.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.54 -7.20 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399570077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.373 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds