Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.85590 * 2 1 4 4 C 1.54654 * 110.85181 * 123.99225 * 2 1 3 5 5 N 1.46763 * 105.38149 * 143.79095 * 4 2 1 6 6 C 1.46506 * 124.35212 * 162.85677 * 5 4 2 7 7 C 1.52999 * 109.46691 * 269.72816 * 6 5 4 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47183 * 60.00274 * 13 11 9 15 15 H 1.48496 * 109.47425 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47216 * 300.00267 * 13 11 9 17 17 C 1.34420 * 111.30095 * 342.58986 * 5 4 2 18 18 O 1.21279 * 124.94154 * 180.69500 * 17 5 4 19 19 C 1.51278 * 110.11298 * 0.67282 * 17 5 4 20 20 H 1.09005 * 110.48487 * 134.93583 * 19 17 5 21 21 C 1.53007 * 110.48745 * 257.43937 * 19 17 5 22 22 H 1.08995 * 109.47063 * 183.79073 * 1 2 3 23 23 H 1.09000 * 109.47265 * 303.79422 * 1 2 3 24 24 H 1.09007 * 109.46730 * 63.78846 * 1 2 3 25 25 H 1.09009 * 110.40127 * 24.76673 * 4 2 1 26 26 H 1.08999 * 110.18490 * 262.70321 * 4 2 1 27 27 H 1.08993 * 109.47068 * 149.72235 * 6 5 4 28 28 H 1.09000 * 109.46872 * 29.72446 * 6 5 4 29 29 H 1.08993 * 109.47839 * 59.99891 * 7 6 5 30 30 H 1.09000 * 109.47160 * 299.99453 * 7 6 5 31 31 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 32 32 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 33 33 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 34 34 H 1.08992 * 109.46861 * 58.54721 * 21 19 17 35 35 H 1.09000 * 109.47293 * 178.55081 * 21 19 17 36 36 H 1.08998 * 109.47007 * 298.54847 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0806 -0.8080 1.1983 5 7 3.2861 -1.4773 0.6956 6 6 4.3275 -2.0551 1.5488 7 6 5.3935 -0.9969 1.8399 8 6 6.4808 -1.6002 2.7315 9 6 7.5311 -0.5582 3.0178 10 1 7.4331 0.4349 2.6047 11 6 8.6170 -0.8725 3.8069 12 7 8.7366 -2.0820 4.3095 13 14 9.9193 0.4189 4.1612 14 1 9.2949 1.5745 4.8542 15 1 10.9745 -0.1665 5.0266 16 1 10.5241 0.8754 2.8841 17 6 3.3092 -1.4970 -0.6483 18 8 4.1851 -1.9986 -1.3206 19 6 2.0834 -0.8030 -1.1999 20 1 2.3587 -0.1321 -2.0137 21 6 1.0564 -1.8308 -1.6794 22 1 -0.3633 -1.0254 0.0679 23 1 -0.3634 0.5716 0.8540 24 1 -0.3633 0.4539 -0.9221 25 1 1.3488 -1.5460 1.5272 26 1 2.3359 -0.1373 2.0187 27 1 4.7861 -2.9023 1.0390 28 1 3.8841 -2.3916 2.4859 29 1 4.9349 -0.1497 2.3497 30 1 5.8369 -0.6604 0.9028 31 1 6.0370 -1.9364 3.6686 32 1 6.9395 -2.4477 2.2220 33 1 9.5003 -2.3031 4.8650 34 1 0.7781 -2.4806 -0.8498 35 1 0.1707 -1.3142 -2.0493 36 1 1.4888 -2.4298 -2.4809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399570080.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -59.465455 kcal Electronic energy + Delta-G solvation = -15604.592184 eV Core-core repulsion = 13087.755840 eV Total energy + Delta-G solvation = -2516.836344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55305 -36.61384 -35.28417 -33.27739 -31.28562 -30.16324 -27.66368 -25.61508 -25.23753 -23.02040 -20.38919 -20.12304 -19.10141 -16.85151 -16.27497 -15.71964 -15.14853 -14.68632 -14.51616 -14.14400 -13.68726 -13.29776 -12.94481 -12.69482 -12.40273 -12.27414 -11.99151 -11.91030 -11.69993 -11.32167 -10.91038 -10.82589 -10.77186 -10.66250 -10.57818 -9.73146 -9.59597 -9.31627 -9.15753 -8.32770 -8.30561 -5.97902 -4.00208 2.83278 3.28657 3.35177 3.39248 3.42398 4.26089 4.33146 4.48237 4.59587 4.86805 5.17391 5.20055 5.29574 5.37727 5.43635 5.46342 5.54254 5.62473 5.71709 5.76906 5.87132 5.89067 6.00532 6.13340 6.17708 6.52322 6.62284 7.01246 7.10950 7.42679 7.67529 7.82656 8.01224 8.41772 8.47413 9.05929 9.63552 11.13481 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048756 B = 0.005098 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.154127 B = 5490.702594 C = 5633.239133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.090 0.910 4 C 0.105 3.895 5 N -0.614 5.614 6 C 0.122 3.878 7 C -0.123 4.123 8 C 0.024 3.976 9 C -0.520 4.520 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.516 3.484 18 O -0.533 6.533 19 C -0.124 4.124 20 H 0.101 0.899 21 C -0.133 4.133 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 3.094 -7.370 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.002 3.998 7 C -0.161 4.161 8 C -0.014 4.014 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C 0.302 3.698 18 O -0.409 6.409 19 C -0.145 4.145 20 H 0.120 0.880 21 C -0.190 4.190 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.006 2.666 -7.547 19.705 hybrid contribution 0.857 0.742 0.395 1.201 sum -17.149 3.409 -7.151 18.890 Atomic orbital electron populations 1.21813 0.93453 1.02448 1.02143 1.22237 0.96708 0.99454 0.93784 0.89119 1.22197 0.86699 0.95903 0.97070 1.48469 1.22195 1.57393 1.06659 1.21708 0.87691 0.97235 0.93192 1.21987 0.96250 0.97236 1.00638 1.19043 0.92097 0.96338 0.93924 1.21183 1.06403 0.97743 1.30478 0.92824 1.25017 0.98093 0.95390 0.95918 1.69954 1.30254 1.19136 1.34189 0.86645 0.81313 0.81712 0.78255 1.20272 1.21251 1.20235 1.20782 0.86877 0.79539 0.82566 1.90714 1.40267 1.47184 1.62747 1.22003 0.95186 0.98453 0.98904 0.88046 1.21658 0.97860 0.98086 1.01428 0.91855 0.92165 0.91977 0.91284 0.90230 0.90372 0.90808 0.93298 0.93022 0.96505 0.96382 0.92944 0.92244 0.91289 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.00 37.16 0.30 -0.62 16 2 C -0.10 -0.95 3.68 -88.89 -0.33 -1.28 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.10 1.17 6.91 -3.03 -0.02 1.15 16 5 N -0.61 -9.60 2.93 -172.30 -0.51 -10.11 16 6 C 0.12 2.22 5.93 -4.04 -0.02 2.20 16 7 C -0.12 -2.66 5.48 -26.73 -0.15 -2.80 16 8 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 9 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 13 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 C 0.52 8.57 7.34 -10.86 -0.08 8.49 16 18 O -0.53 -11.27 17.59 5.56 0.10 -11.18 16 19 C -0.12 -1.41 3.44 -90.63 -0.31 -1.72 16 20 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 21 C -0.13 -1.23 7.98 37.16 0.30 -0.93 16 22 H 0.06 0.39 6.60 -51.93 -0.34 0.05 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.35 7.80 -51.93 -0.41 -0.05 16 25 H 0.07 0.66 7.83 -51.92 -0.41 0.25 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 0.54 7.58 -51.93 -0.39 0.15 16 35 H 0.07 0.47 7.01 -51.93 -0.36 0.11 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -33.51 295.19 -7.20 -40.71 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -6.09 Total: -5.38 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.87 Total: -8.93 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.23 Total: -36.75 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.10 Total: -11.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.51 -7.20 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399570080.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.756 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds