Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.85590 * 2 1 4 4 C 1.54654 * 110.85181 * 123.99225 * 2 1 3 5 5 N 1.46763 * 105.38149 * 143.79095 * 4 2 1 6 6 C 1.46506 * 124.35212 * 162.85677 * 5 4 2 7 7 C 1.52999 * 109.46691 * 269.72816 * 6 5 4 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47183 * 60.00274 * 13 11 9 15 15 H 1.48496 * 109.47425 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47216 * 300.00267 * 13 11 9 17 17 C 1.34420 * 111.30095 * 342.58986 * 5 4 2 18 18 O 1.21279 * 124.94154 * 180.69500 * 17 5 4 19 19 C 1.51278 * 110.11298 * 0.67282 * 17 5 4 20 20 H 1.09005 * 110.48487 * 134.93583 * 19 17 5 21 21 C 1.53007 * 110.48745 * 257.43937 * 19 17 5 22 22 H 1.08995 * 109.47063 * 183.79073 * 1 2 3 23 23 H 1.09000 * 109.47265 * 303.79422 * 1 2 3 24 24 H 1.09007 * 109.46730 * 63.78846 * 1 2 3 25 25 H 1.09009 * 110.40127 * 24.76673 * 4 2 1 26 26 H 1.08999 * 110.18490 * 262.70321 * 4 2 1 27 27 H 1.08993 * 109.47068 * 149.72235 * 6 5 4 28 28 H 1.09000 * 109.46872 * 29.72446 * 6 5 4 29 29 H 1.08993 * 109.47839 * 59.99891 * 7 6 5 30 30 H 1.09000 * 109.47160 * 299.99453 * 7 6 5 31 31 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 32 32 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 33 33 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 34 34 H 1.08992 * 109.46861 * 58.54721 * 21 19 17 35 35 H 1.09000 * 109.47293 * 178.55081 * 21 19 17 36 36 H 1.08998 * 109.47007 * 298.54847 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0806 -0.8080 1.1983 5 7 3.2861 -1.4773 0.6956 6 6 4.3275 -2.0551 1.5488 7 6 5.3935 -0.9969 1.8399 8 6 6.4808 -1.6002 2.7315 9 6 7.5311 -0.5582 3.0178 10 1 7.4331 0.4349 2.6047 11 6 8.6170 -0.8725 3.8069 12 7 8.7366 -2.0820 4.3095 13 14 9.9193 0.4189 4.1612 14 1 9.2949 1.5745 4.8542 15 1 10.9745 -0.1665 5.0266 16 1 10.5241 0.8754 2.8841 17 6 3.3092 -1.4970 -0.6483 18 8 4.1851 -1.9986 -1.3206 19 6 2.0834 -0.8030 -1.1999 20 1 2.3587 -0.1321 -2.0137 21 6 1.0564 -1.8308 -1.6794 22 1 -0.3633 -1.0254 0.0679 23 1 -0.3634 0.5716 0.8540 24 1 -0.3633 0.4539 -0.9221 25 1 1.3488 -1.5460 1.5272 26 1 2.3359 -0.1373 2.0187 27 1 4.7861 -2.9023 1.0390 28 1 3.8841 -2.3916 2.4859 29 1 4.9349 -0.1497 2.3497 30 1 5.8369 -0.6604 0.9028 31 1 6.0370 -1.9364 3.6686 32 1 6.9395 -2.4477 2.2220 33 1 9.5003 -2.3031 4.8650 34 1 0.7781 -2.4806 -0.8498 35 1 0.1707 -1.3142 -2.0493 36 1 1.4888 -2.4298 -2.4809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399570080.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -80.607837 kcal Electronic energy + Delta-G solvation = -15605.508986 eV Core-core repulsion = 13087.755840 eV Total energy + Delta-G solvation = -2517.753146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.69286 -37.85680 -36.83073 -35.11521 -33.08275 -30.95004 -29.25754 -26.84225 -26.33197 -24.68199 -22.24176 -21.06072 -20.32942 -18.57706 -17.82129 -16.90013 -16.53748 -16.44104 -15.74854 -15.47211 -15.13566 -14.48839 -14.26459 -13.90252 -13.66244 -13.43776 -13.23911 -13.16078 -12.74550 -12.67744 -12.64833 -12.50477 -12.32631 -11.68752 -11.64930 -11.51337 -11.44557 -11.32093 -10.67281 -10.58454 -9.67408 -8.23014 -6.34935 1.37561 1.41307 1.49227 1.55331 2.06653 2.39347 3.09693 3.33391 3.46499 3.86975 4.00439 4.09053 4.23241 4.41310 4.51380 4.56288 4.57857 4.63616 4.74758 4.85310 4.89058 4.95886 4.98961 5.10957 5.13768 5.25040 5.29730 5.43276 5.53699 5.62222 5.65731 5.78910 6.19761 6.21310 6.80003 7.15502 7.34201 8.88576 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048756 B = 0.005098 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.154127 B = 5490.702594 C = 5633.239133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.096 3.904 5 N -0.617 5.617 6 C 0.131 3.869 7 C -0.104 4.104 8 C 0.028 3.972 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.001 3.999 12 N -0.931 5.931 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.272 1.272 17 C 0.498 3.502 18 O -0.592 6.592 19 C -0.116 4.116 20 H 0.107 0.893 21 C -0.129 4.129 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.006 0.994 32 H -0.014 1.014 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.641 4.872 -7.076 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.113 0.887 4 C -0.026 4.026 5 N -0.348 5.348 6 C 0.009 3.991 7 C -0.142 4.142 8 C -0.010 4.010 9 C -0.586 4.586 10 H 0.074 0.926 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.197 1.197 17 C 0.288 3.712 18 O -0.473 6.473 19 C -0.137 4.137 20 H 0.125 0.875 21 C -0.186 4.186 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.005 0.995 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.047 4.468 -7.238 21.777 hybrid contribution 1.472 0.156 0.317 1.514 sum -18.575 4.624 -6.922 20.355 Atomic orbital electron populations 1.21813 0.90674 1.03341 1.03510 1.22274 0.98763 0.98736 0.91216 0.88742 1.22585 0.85233 0.96648 0.98099 1.48584 1.22697 1.57088 1.06448 1.21369 0.87946 0.95389 0.94442 1.21710 0.95842 0.98297 0.98400 1.18929 0.93069 0.95120 0.93894 1.21610 1.07624 0.98362 1.30988 0.92614 1.25981 1.00490 0.97750 0.95436 1.70082 1.31172 1.21211 1.34666 0.85482 0.78169 0.78965 0.78327 1.18739 1.20448 1.19670 1.21867 0.87749 0.78891 0.82722 1.90669 1.42850 1.49756 1.64047 1.22053 0.93118 0.98768 0.99809 0.87504 1.21689 0.98154 0.97673 1.01073 0.91186 0.90930 0.90563 0.88940 0.89621 0.92750 0.88520 0.91948 0.95337 0.97595 0.99549 0.92611 0.91914 0.87960 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.00 71.98 0.58 -0.59 16 2 C -0.09 -1.40 3.68 -9.68 -0.04 -1.43 16 3 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.10 1.90 6.91 86.89 0.60 2.50 16 5 N -0.62 -18.98 2.93 -817.63 -2.40 -21.38 16 6 C 0.13 4.83 5.93 86.38 0.51 5.34 16 7 C -0.10 -4.61 5.48 30.60 0.17 -4.45 16 8 C 0.03 1.52 4.97 29.85 0.15 1.66 16 9 C -0.55 -32.50 9.11 25.60 0.23 -32.27 16 10 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 11 C 0.00 0.09 5.46 84.65 0.46 0.55 16 12 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 13 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 17 C 0.50 16.70 7.34 87.90 0.65 17.34 16 18 O -0.59 -26.30 17.59 -3.03 -0.05 -26.35 16 19 C -0.12 -2.43 3.44 -10.80 -0.04 -2.47 16 20 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 21 C -0.13 -2.07 7.98 71.98 0.57 -1.50 16 22 H 0.07 0.54 6.60 -2.39 -0.02 0.53 16 23 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.08 0.49 7.80 -2.38 -0.02 0.48 16 25 H 0.09 1.44 7.83 -2.38 -0.02 1.42 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 2.26 7.92 -2.39 -0.02 2.24 16 28 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.06 0.98 7.58 -2.39 -0.02 0.96 16 35 H 0.10 0.99 7.01 -2.39 -0.02 0.97 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.26 295.19 4.74 -70.53 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.03 Total: 2.70 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.85 Total: -15.30 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -2.11 Total: -78.92 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.26 4.74 -70.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399570080.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.082 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds