Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.85788 * 2 1 4 4 C 1.54485 * 110.97128 * 123.82758 * 2 1 3 5 5 N 1.46768 * 105.47053 * 92.70282 * 4 2 1 6 6 C 1.46496 * 124.35054 * 197.03851 * 5 4 2 7 7 C 1.53001 * 109.47319 * 269.95364 * 6 5 4 8 8 C 1.52995 * 109.46967 * 179.97438 * 7 6 5 9 9 C 1.50710 * 109.46927 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99704 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99952 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00315 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47033 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46828 * 119.99947 * 13 11 9 16 16 H 1.48493 * 109.47240 * 240.00406 * 13 11 9 17 17 C 1.34423 * 111.30065 * 17.02076 * 5 4 2 18 18 O 1.21277 * 124.94263 * 179.55583 * 17 5 4 19 19 C 1.51282 * 110.11567 * 359.58815 * 17 5 4 20 20 H 1.09001 * 110.49002 * 225.07000 * 19 17 5 21 21 C 1.53004 * 110.48451 * 102.42688 * 19 17 5 22 22 H 1.09002 * 109.47153 * 183.78852 * 1 2 3 23 23 H 1.09001 * 109.46832 * 63.79043 * 1 2 3 24 24 H 1.09004 * 109.47261 * 303.79024 * 1 2 3 25 25 H 1.08994 * 110.25202 * 211.70420 * 4 2 1 26 26 H 1.08997 * 110.24212 * 333.70866 * 4 2 1 27 27 H 1.09002 * 109.47119 * 29.95775 * 6 5 4 28 28 H 1.09003 * 109.46963 * 149.95170 * 6 5 4 29 29 H 1.09007 * 109.46909 * 300.00308 * 7 6 5 30 30 H 1.08998 * 109.46998 * 59.99597 * 7 6 5 31 31 H 1.08998 * 109.47369 * 299.99383 * 8 7 6 32 32 H 1.09000 * 109.47580 * 60.00518 * 8 7 6 33 33 H 0.96993 * 120.00487 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46855 * 305.22378 * 21 19 17 35 35 H 1.08999 * 109.47239 * 65.22419 * 21 19 17 36 36 H 1.09001 * 109.46932 * 185.22451 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0829 -0.8030 1.1983 5 7 2.2853 -2.1670 0.6956 6 6 2.4540 -3.3459 1.5488 7 6 3.9401 -3.5478 1.8517 8 6 4.1161 -4.7786 2.7432 9 6 5.5800 -4.9778 3.0411 10 1 6.3114 -4.2945 2.6355 11 6 5.9853 -6.0317 3.8324 12 7 5.0946 -6.8634 4.3268 13 14 7.7998 -6.2790 4.2010 14 1 8.5905 -5.2154 3.5309 15 1 8.0208 -6.2096 5.6679 16 1 8.2305 -7.6080 3.6978 17 6 2.2955 -2.1956 -0.6483 18 8 2.4527 -3.1926 -1.3207 19 6 2.0834 -0.8030 -1.1999 20 1 1.3584 -0.8213 -2.0136 21 6 3.4100 -0.2080 -1.6764 22 1 -0.3633 -1.0254 0.0679 23 1 -0.3633 0.4539 -0.9220 24 1 -0.3634 0.5716 0.8541 25 1 3.0302 -0.3794 1.5315 26 1 1.3617 -0.8055 2.0156 27 1 1.9095 -3.2002 2.4817 28 1 2.0653 -4.2250 1.0347 29 1 4.4846 -3.6935 0.9187 30 1 4.3288 -2.6686 2.3656 31 1 3.5718 -4.6324 3.6762 32 1 3.7274 -5.6579 2.2297 33 1 5.3797 -7.6050 4.8831 34 1 4.1355 -0.2405 -0.8635 35 1 3.7848 -0.7857 -2.5213 36 1 3.2548 0.8262 -1.9836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399570083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -62.105181 kcal Electronic energy + Delta-G solvation = -15647.334722 eV Core-core repulsion = 13130.383911 eV Total energy + Delta-G solvation = -2516.950811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55015 -36.52978 -35.14943 -33.15759 -31.17733 -30.70262 -27.33563 -26.17494 -24.59903 -22.87308 -20.78181 -20.34676 -19.06841 -16.62647 -15.99572 -15.72707 -15.42941 -14.47670 -14.27516 -13.84208 -13.64272 -13.55939 -13.23178 -12.86821 -12.42198 -12.29367 -12.00916 -11.78052 -11.47856 -11.29606 -11.04830 -10.86764 -10.77674 -10.73616 -10.54294 -9.73657 -9.61059 -9.29293 -9.12912 -8.33629 -8.30314 -5.98359 -4.00462 2.84278 3.29490 3.32522 3.39838 3.44570 4.23297 4.33282 4.48075 4.61032 4.85523 5.19032 5.22688 5.32021 5.37550 5.43242 5.52439 5.61313 5.63634 5.73169 5.79578 5.81932 5.96456 6.00688 6.12483 6.18058 6.52374 6.63049 7.01267 7.11388 7.43075 7.67929 7.82633 8.01050 8.41993 8.47778 9.06184 9.63475 11.13114 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044580 B = 0.005288 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.935918 B = 5293.548662 C = 5437.233658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.096 0.904 4 C 0.105 3.895 5 N -0.613 5.613 6 C 0.123 3.877 7 C -0.122 4.122 8 C 0.023 3.977 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.516 3.484 18 O -0.533 6.533 19 C -0.123 4.123 20 H 0.101 0.899 21 C -0.134 4.134 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 16.301 -7.428 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.114 0.886 4 C -0.019 4.019 5 N -0.346 5.346 6 C 0.002 3.998 7 C -0.161 4.161 8 C -0.015 4.015 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.303 3.697 18 O -0.410 6.410 19 C -0.145 4.145 20 H 0.119 0.881 21 C -0.192 4.192 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.457 15.541 -7.610 19.260 hybrid contribution 1.018 -0.238 0.416 1.125 sum -7.440 15.303 -7.194 18.474 Atomic orbital electron populations 1.21804 0.93831 1.02382 1.02105 1.22267 0.96513 0.99476 0.93919 0.88601 1.22145 1.00980 0.82047 0.96699 1.48443 1.71132 1.08392 1.06624 1.21711 0.99105 0.85808 0.93152 1.21986 0.92758 1.00780 1.00585 1.19053 0.97019 0.91475 0.93930 1.21261 0.92668 1.11421 1.30289 0.92716 1.25019 0.97547 0.95940 0.95956 1.69968 1.33216 1.15911 1.34437 0.86537 0.85473 0.78070 0.77935 1.19769 1.21014 1.20972 1.20762 0.75976 0.90417 0.82561 1.90714 1.50135 1.37358 1.62746 1.22052 0.99928 0.93786 0.98708 0.88061 1.21613 0.95089 1.00596 1.01896 0.92393 0.92131 0.91961 0.91082 0.90376 0.90828 0.90406 0.93020 0.93310 0.96507 0.96381 0.93058 0.92046 0.91705 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.12 37.16 0.34 -0.78 16 2 C -0.10 -0.91 3.28 -88.99 -0.29 -1.20 16 3 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 4 C 0.10 1.16 6.90 -3.12 -0.02 1.14 16 5 N -0.61 -9.50 2.93 -172.41 -0.51 -10.00 16 6 C 0.12 2.22 5.93 -4.04 -0.02 2.20 16 7 C -0.12 -2.65 5.48 -26.73 -0.15 -2.80 16 8 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 9 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 10 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 13 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.52 8.53 7.35 -10.86 -0.08 8.45 16 18 O -0.53 -11.26 17.60 5.56 0.10 -11.16 16 19 C -0.12 -1.40 3.08 -90.63 -0.28 -1.68 16 20 H 0.10 1.06 7.91 -51.93 -0.41 0.65 16 21 C -0.13 -1.37 9.17 37.16 0.34 -1.03 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.77 7.91 -51.93 -0.41 0.35 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 29 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -33.52 299.93 -7.14 -40.66 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -6.26 Total: -5.37 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.71 Total: -9.08 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.23 Total: -36.64 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.10 Total: -11.16 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.52 -7.14 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399570083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.445 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds