Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.85788 * 2 1 4 4 C 1.54485 * 110.97128 * 123.82758 * 2 1 3 5 5 N 1.46768 * 105.47053 * 92.70282 * 4 2 1 6 6 C 1.46496 * 124.35054 * 197.03851 * 5 4 2 7 7 C 1.53001 * 109.47319 * 269.95364 * 6 5 4 8 8 C 1.52995 * 109.46967 * 179.97438 * 7 6 5 9 9 C 1.50710 * 109.46927 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99704 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99952 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00315 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47033 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46828 * 119.99947 * 13 11 9 16 16 H 1.48493 * 109.47240 * 240.00406 * 13 11 9 17 17 C 1.34423 * 111.30065 * 17.02076 * 5 4 2 18 18 O 1.21277 * 124.94263 * 179.55583 * 17 5 4 19 19 C 1.51282 * 110.11567 * 359.58815 * 17 5 4 20 20 H 1.09001 * 110.49002 * 225.07000 * 19 17 5 21 21 C 1.53004 * 110.48451 * 102.42688 * 19 17 5 22 22 H 1.09002 * 109.47153 * 183.78852 * 1 2 3 23 23 H 1.09001 * 109.46832 * 63.79043 * 1 2 3 24 24 H 1.09004 * 109.47261 * 303.79024 * 1 2 3 25 25 H 1.08994 * 110.25202 * 211.70420 * 4 2 1 26 26 H 1.08997 * 110.24212 * 333.70866 * 4 2 1 27 27 H 1.09002 * 109.47119 * 29.95775 * 6 5 4 28 28 H 1.09003 * 109.46963 * 149.95170 * 6 5 4 29 29 H 1.09007 * 109.46909 * 300.00308 * 7 6 5 30 30 H 1.08998 * 109.46998 * 59.99597 * 7 6 5 31 31 H 1.08998 * 109.47369 * 299.99383 * 8 7 6 32 32 H 1.09000 * 109.47580 * 60.00518 * 8 7 6 33 33 H 0.96993 * 120.00487 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46855 * 305.22378 * 21 19 17 35 35 H 1.08999 * 109.47239 * 65.22419 * 21 19 17 36 36 H 1.09001 * 109.46932 * 185.22451 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0829 -0.8030 1.1983 5 7 2.2853 -2.1670 0.6956 6 6 2.4540 -3.3459 1.5488 7 6 3.9401 -3.5478 1.8517 8 6 4.1161 -4.7786 2.7432 9 6 5.5800 -4.9778 3.0411 10 1 6.3114 -4.2945 2.6355 11 6 5.9853 -6.0317 3.8324 12 7 5.0946 -6.8634 4.3268 13 14 7.7998 -6.2790 4.2010 14 1 8.5905 -5.2154 3.5309 15 1 8.0208 -6.2096 5.6679 16 1 8.2305 -7.6080 3.6978 17 6 2.2955 -2.1956 -0.6483 18 8 2.4527 -3.1926 -1.3207 19 6 2.0834 -0.8030 -1.1999 20 1 1.3584 -0.8213 -2.0136 21 6 3.4100 -0.2080 -1.6764 22 1 -0.3633 -1.0254 0.0679 23 1 -0.3633 0.4539 -0.9220 24 1 -0.3634 0.5716 0.8541 25 1 3.0302 -0.3794 1.5315 26 1 1.3617 -0.8055 2.0156 27 1 1.9095 -3.2002 2.4817 28 1 2.0653 -4.2250 1.0347 29 1 4.4846 -3.6935 0.9187 30 1 4.3288 -2.6686 2.3656 31 1 3.5718 -4.6324 3.6762 32 1 3.7274 -5.6579 2.2297 33 1 5.3797 -7.6050 4.8831 34 1 4.1355 -0.2405 -0.8635 35 1 3.7848 -0.7857 -2.5213 36 1 3.2548 0.8262 -1.9836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399570083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -83.230980 kcal Electronic energy + Delta-G solvation = -15648.250805 eV Core-core repulsion = 13130.383911 eV Total energy + Delta-G solvation = -2517.866894 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68783 -37.79693 -36.74268 -35.00008 -32.93109 -31.52042 -29.01757 -27.21006 -26.05333 -24.31695 -22.27878 -21.61332 -20.33587 -18.58199 -17.48946 -16.85675 -16.65377 -16.48738 -15.63836 -15.05892 -14.76184 -14.68688 -14.39980 -14.26529 -13.81562 -13.54972 -13.22487 -13.15958 -12.84516 -12.69984 -12.59247 -12.45192 -12.11987 -11.87554 -11.70699 -11.54208 -11.50330 -11.29495 -10.65316 -10.59636 -9.66123 -8.23485 -6.35194 1.37286 1.38527 1.51607 1.57112 2.07907 2.39076 3.09404 3.33494 3.46302 3.87652 3.99333 4.08555 4.24600 4.40401 4.50678 4.54635 4.59888 4.64124 4.74500 4.84672 4.91100 4.93436 4.99405 5.08191 5.11607 5.19127 5.27348 5.43893 5.45267 5.61924 5.66177 5.78985 6.19982 6.22653 6.80194 7.16986 7.34102 8.88540 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044580 B = 0.005288 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.935918 B = 5293.548662 C = 5437.233658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.132 0.868 4 C 0.094 3.906 5 N -0.615 5.615 6 C 0.131 3.869 7 C -0.103 4.103 8 C 0.027 3.973 9 C -0.546 4.546 10 H 0.055 0.945 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.279 1.279 17 C 0.499 3.501 18 O -0.594 6.594 19 C -0.115 4.115 20 H 0.112 0.888 21 C -0.132 4.132 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.006 0.994 32 H -0.014 1.014 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 19.075 -7.112 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.150 0.850 4 C -0.027 4.027 5 N -0.346 5.346 6 C 0.009 3.991 7 C -0.142 4.142 8 C -0.011 4.011 9 C -0.584 4.584 10 H 0.074 0.926 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.204 1.204 17 C 0.288 3.712 18 O -0.475 6.475 19 C -0.137 4.137 20 H 0.130 0.870 21 C -0.189 4.189 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.004 0.996 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.211 18.367 -7.279 21.395 hybrid contribution 0.902 -1.116 0.329 1.473 sum -7.309 17.250 -6.950 19.982 Atomic orbital electron populations 1.21825 0.92920 1.01463 1.03802 1.22332 0.97118 1.00220 0.90842 0.85023 1.22540 1.02258 0.79622 0.98326 1.48552 1.70251 1.09427 1.06400 1.21370 0.96600 0.86743 0.94381 1.21706 0.95206 0.98955 0.98348 1.18936 0.95832 0.92399 0.93893 1.21665 0.93862 1.12013 1.30812 0.92635 1.25980 1.02816 0.95401 0.95498 1.70089 1.35720 1.16453 1.34920 0.85376 0.79107 0.78177 0.78248 1.18817 1.19739 1.20439 1.21855 0.74660 0.91945 0.82729 1.90668 1.52770 1.39961 1.64071 1.22108 1.01098 0.90470 0.99979 0.86971 1.21647 0.94000 1.02373 1.00929 0.94659 0.90623 0.90102 0.90168 0.88597 0.88542 0.92843 0.95368 0.91968 0.97597 0.99561 0.92619 0.92884 0.93412 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.12 71.98 0.66 -1.07 16 2 C -0.09 -1.20 3.28 -9.74 -0.03 -1.24 16 3 H 0.13 1.02 7.90 -2.38 -0.02 1.00 16 4 C 0.09 1.83 6.90 86.83 0.60 2.43 16 5 N -0.61 -18.80 2.93 -817.97 -2.40 -21.20 16 6 C 0.13 4.85 5.93 86.38 0.51 5.36 16 7 C -0.10 -4.60 5.48 30.59 0.17 -4.43 16 8 C 0.03 1.49 4.97 29.85 0.15 1.64 16 9 C -0.55 -32.38 9.11 25.60 0.23 -32.14 16 10 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 11 C 0.00 0.06 5.46 84.66 0.46 0.52 16 12 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 13 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 14 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 C 0.50 16.64 7.35 87.90 0.65 17.29 16 18 O -0.59 -26.38 17.60 -3.02 -0.05 -26.44 16 19 C -0.12 -2.38 3.08 -10.80 -0.03 -2.42 16 20 H 0.11 2.11 7.91 -2.39 -0.02 2.09 16 21 C -0.13 -2.38 9.17 71.98 0.66 -1.72 16 22 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 1.56 7.91 -2.39 -0.02 1.54 16 27 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 29 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.78 299.93 4.90 -70.88 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.02 Total: 2.69 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.02 Total: -15.78 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.11 Total: -78.75 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -75.78 4.90 -70.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399570083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.353 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds