Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.43692 * 2 1 4 4 C 1.54624 * 110.49087 * 122.54304 * 2 1 3 5 5 C 1.54479 * 101.76598 * 93.87621 * 4 2 1 6 6 N 1.46766 * 105.47255 * 25.42381 * 5 4 2 7 7 C 1.46499 * 124.35270 * 162.98097 * 6 5 4 8 8 C 1.53001 * 109.46946 * 89.99542 * 7 6 5 9 9 C 1.53002 * 109.47167 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47174 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.47237 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99356 * 0.02562 * 11 10 9 13 13 C 1.37868 * 120.00294 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99852 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00158 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47079 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47025 * 119.99675 * 15 13 11 18 18 H 1.48496 * 109.47348 * 239.99992 * 15 13 11 19 19 C 1.34426 * 111.29685 * 342.97929 * 6 5 4 20 20 O 1.21278 * 124.93825 * 180.44512 * 19 6 5 21 21 H 1.09002 * 109.47153 * 297.45652 * 1 2 3 22 22 H 1.09001 * 109.46832 * 177.45842 * 1 2 3 23 23 H 1.09004 * 109.47261 * 57.45824 * 1 2 3 24 24 H 1.09003 * 110.97232 * 212.00303 * 4 2 1 25 25 H 1.09004 * 110.96839 * 335.76313 * 4 2 1 26 26 H 1.09007 * 110.24271 * 144.41533 * 5 4 2 27 27 H 1.08992 * 110.25171 * 266.42045 * 5 4 2 28 28 H 1.08996 * 109.47194 * 209.99734 * 7 6 5 29 29 H 1.09001 * 109.46642 * 329.99805 * 7 6 5 30 30 H 1.08996 * 109.47330 * 300.00108 * 8 7 6 31 31 H 1.09002 * 109.47042 * 60.00108 * 8 7 6 32 32 H 1.09004 * 109.46606 * 300.00275 * 9 8 7 33 33 H 1.09002 * 109.47254 * 59.99990 * 9 8 7 34 34 H 1.09004 * 109.47356 * 299.99542 * 10 9 8 35 35 H 1.09001 * 109.47455 * 60.00239 * 10 9 8 36 36 H 0.97000 * 120.00058 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0712 -0.7791 1.2210 5 6 2.2773 -2.1906 0.6279 6 7 2.4757 -1.9852 -0.8117 7 6 3.0532 -2.9817 -1.7171 8 6 1.9373 -3.8583 -2.2892 9 6 2.5404 -4.8995 -3.2342 10 6 1.4245 -5.7756 -3.8069 11 6 2.0186 -6.8016 -4.7373 12 1 3.0855 -6.8264 -4.9031 13 6 1.2003 -7.7090 -5.3758 14 7 -0.0988 -7.6796 -5.1726 15 14 1.9366 -8.9802 -6.5295 16 1 3.4101 -8.8035 -6.5853 17 1 1.6206 -10.3429 -6.0312 18 1 1.3648 -8.8053 -7.8888 19 6 2.0595 -0.7652 -1.1928 20 8 2.1016 -0.3400 -2.3278 21 1 -0.3633 0.4738 0.9119 22 1 -0.3633 -1.0267 -0.0456 23 1 -0.3634 0.5528 -0.8663 24 1 3.0163 -0.3585 1.5645 25 1 1.3384 -0.7982 2.0277 26 1 3.1581 -2.6593 1.0669 27 1 1.3949 -2.8059 0.8030 28 1 3.5714 -2.4757 -2.5315 29 1 3.7595 -3.6048 -1.1685 30 1 1.4190 -4.3644 -1.4748 31 1 1.2309 -3.2351 -2.8377 32 1 3.0589 -4.3936 -4.0487 33 1 3.2465 -5.5226 -2.6854 34 1 0.9056 -6.2814 -2.9926 35 1 0.7186 -5.1523 -4.3559 36 1 -0.6745 -8.3183 -5.6216 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399704487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -64.053431 kcal Electronic energy + Delta-G solvation = -15319.968094 eV Core-core repulsion = 12802.932800 eV Total energy + Delta-G solvation = -2517.035293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52369 -36.44217 -35.43979 -33.49900 -31.96651 -29.49468 -28.08806 -25.62790 -24.69909 -22.35031 -21.25480 -20.06897 -19.15746 -16.61199 -16.27414 -16.06361 -15.63712 -14.59507 -14.43904 -14.06064 -13.76141 -13.40912 -13.06322 -12.54988 -12.51292 -12.35911 -12.20421 -11.84232 -11.63135 -11.13411 -11.09434 -10.96946 -10.54849 -10.49852 -10.48045 -9.66840 -9.62523 -9.35627 -9.05401 -8.51413 -8.31624 -5.96384 -3.98639 2.65793 3.07498 3.33254 3.40465 3.44923 4.17558 4.28232 4.49039 4.59568 4.82705 5.11172 5.21559 5.28220 5.38350 5.39514 5.42950 5.52905 5.62630 5.71815 5.73625 5.77852 5.99672 6.03809 6.14187 6.49357 6.65500 6.78926 6.94371 7.18370 7.22179 7.72281 7.87429 8.04392 8.25812 8.47033 9.08976 9.65326 11.15101 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053170 B = 0.004455 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.490923 B = 6283.303067 C = 6346.975046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 H 0.102 0.898 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.617 5.617 7 C 0.124 3.876 8 C -0.132 4.132 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.516 3.484 20 O -0.531 6.531 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 13.199 15.378 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 H 0.120 0.880 4 C -0.167 4.167 5 C -0.023 4.023 6 N -0.350 5.350 7 C 0.003 3.997 8 C -0.171 4.171 9 C -0.146 4.146 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.303 3.697 20 O -0.407 6.407 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.645 13.272 14.674 20.119 hybrid contribution 0.272 -0.890 -0.613 1.114 sum 3.917 12.382 14.061 19.141 Atomic orbital electron populations 1.21633 0.92058 1.02888 1.02712 1.21952 0.98182 1.00638 0.94052 0.87977 1.22703 1.02319 0.94520 0.97197 1.22080 1.02200 0.97535 0.80463 1.48406 1.62120 1.15304 1.09187 1.21615 0.96085 0.89398 0.92578 1.22020 0.97815 0.97645 0.99610 1.21572 0.99983 0.96063 0.96972 1.19094 0.93118 0.93801 0.95608 1.21324 0.93597 1.14842 1.25980 0.92646 1.25035 0.94837 0.97743 0.96932 1.69983 1.03185 1.36886 1.43559 0.86545 0.79365 0.81375 0.80779 1.19735 1.21048 1.21013 1.20829 0.77057 0.82186 0.89606 1.90723 1.55792 1.72253 1.21908 0.91434 0.92023 0.91670 0.90105 0.89149 0.90382 0.90973 0.90207 0.90588 0.92394 0.92140 0.93233 0.93344 0.96729 0.96653 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 37.16 0.34 -0.88 16 2 C -0.13 -1.25 3.53 -90.63 -0.32 -1.57 16 3 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -0.91 6.71 -25.10 -0.17 -1.08 16 5 C 0.10 0.92 7.35 -3.12 -0.02 0.89 16 6 N -0.62 -8.21 2.93 -172.41 -0.51 -8.71 16 7 C 0.12 1.84 5.93 -4.04 -0.02 1.82 16 8 C -0.13 -2.37 5.54 -26.73 -0.15 -2.52 16 9 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 15 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.52 7.61 7.35 -10.86 -0.08 7.53 16 20 O -0.53 -10.23 17.60 5.56 0.10 -10.13 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.46 7.90 -51.93 -0.41 0.05 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -33.95 300.81 -7.55 -41.50 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -6.28 Total: -5.62 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.11 Total: -11.73 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.23 Total: -35.61 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.10 Total: -10.13 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.95 -7.55 -41.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399704487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.553 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds