Wall clock time and date at job start Mon Mar 30 2020 02:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.43692 * 2 1 4 4 C 1.54624 * 110.49087 * 122.54304 * 2 1 3 5 5 C 1.54479 * 101.76598 * 93.87621 * 4 2 1 6 6 N 1.46766 * 105.47255 * 25.42381 * 5 4 2 7 7 C 1.46499 * 124.35270 * 162.98097 * 6 5 4 8 8 C 1.53001 * 109.46946 * 89.99542 * 7 6 5 9 9 C 1.53002 * 109.47167 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47174 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.47237 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99356 * 0.02562 * 11 10 9 13 13 C 1.37868 * 120.00294 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99852 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00158 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47079 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47025 * 119.99675 * 15 13 11 18 18 H 1.48496 * 109.47348 * 239.99992 * 15 13 11 19 19 C 1.34426 * 111.29685 * 342.97929 * 6 5 4 20 20 O 1.21278 * 124.93825 * 180.44512 * 19 6 5 21 21 H 1.09002 * 109.47153 * 297.45652 * 1 2 3 22 22 H 1.09001 * 109.46832 * 177.45842 * 1 2 3 23 23 H 1.09004 * 109.47261 * 57.45824 * 1 2 3 24 24 H 1.09003 * 110.97232 * 212.00303 * 4 2 1 25 25 H 1.09004 * 110.96839 * 335.76313 * 4 2 1 26 26 H 1.09007 * 110.24271 * 144.41533 * 5 4 2 27 27 H 1.08992 * 110.25171 * 266.42045 * 5 4 2 28 28 H 1.08996 * 109.47194 * 209.99734 * 7 6 5 29 29 H 1.09001 * 109.46642 * 329.99805 * 7 6 5 30 30 H 1.08996 * 109.47330 * 300.00108 * 8 7 6 31 31 H 1.09002 * 109.47042 * 60.00108 * 8 7 6 32 32 H 1.09004 * 109.46606 * 300.00275 * 9 8 7 33 33 H 1.09002 * 109.47254 * 59.99990 * 9 8 7 34 34 H 1.09004 * 109.47356 * 299.99542 * 10 9 8 35 35 H 1.09001 * 109.47455 * 60.00239 * 10 9 8 36 36 H 0.97000 * 120.00058 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0712 -0.7791 1.2210 5 6 2.2773 -2.1906 0.6279 6 7 2.4757 -1.9852 -0.8117 7 6 3.0532 -2.9817 -1.7171 8 6 1.9373 -3.8583 -2.2892 9 6 2.5404 -4.8995 -3.2342 10 6 1.4245 -5.7756 -3.8069 11 6 2.0186 -6.8016 -4.7373 12 1 3.0855 -6.8264 -4.9031 13 6 1.2003 -7.7090 -5.3758 14 7 -0.0988 -7.6796 -5.1726 15 14 1.9366 -8.9802 -6.5295 16 1 3.4101 -8.8035 -6.5853 17 1 1.6206 -10.3429 -6.0312 18 1 1.3648 -8.8053 -7.8888 19 6 2.0595 -0.7652 -1.1928 20 8 2.1016 -0.3400 -2.3278 21 1 -0.3633 0.4738 0.9119 22 1 -0.3633 -1.0267 -0.0456 23 1 -0.3634 0.5528 -0.8663 24 1 3.0163 -0.3585 1.5645 25 1 1.3384 -0.7982 2.0277 26 1 3.1581 -2.6593 1.0669 27 1 1.3949 -2.8059 0.8030 28 1 3.5714 -2.4757 -2.5315 29 1 3.7595 -3.6048 -1.1685 30 1 1.4190 -4.3644 -1.4748 31 1 1.2309 -3.2351 -2.8377 32 1 3.0589 -4.3936 -4.0487 33 1 3.2465 -5.5226 -2.6854 34 1 0.9056 -6.2814 -2.9926 35 1 0.7186 -5.1523 -4.3559 36 1 -0.6745 -8.3183 -5.6216 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399704487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:09 Heat of formation + Delta-G solvation = -85.471640 kcal Electronic energy + Delta-G solvation = -15320.896857 eV Core-core repulsion = 12802.932800 eV Total energy + Delta-G solvation = -2517.964057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52644 -37.63339 -36.91687 -35.16953 -33.63537 -30.78876 -29.34437 -27.03080 -25.92066 -23.93242 -22.17489 -21.87101 -20.22882 -18.48214 -17.63207 -17.04142 -16.74408 -16.51253 -16.00986 -15.08122 -14.89452 -14.64442 -14.21914 -13.96518 -13.85590 -13.62743 -13.24687 -13.18489 -13.02679 -12.85886 -12.39920 -12.32249 -12.17342 -11.81361 -11.76200 -11.47345 -11.39708 -11.18149 -10.70126 -10.58655 -9.68170 -8.22115 -6.34172 1.38544 1.39581 1.53032 1.54614 2.07129 2.39874 3.10778 3.35371 3.59149 3.96979 3.99202 4.04777 4.16835 4.36869 4.41935 4.51468 4.56369 4.66167 4.75439 4.82280 4.83855 4.97543 5.06204 5.12300 5.13368 5.21277 5.23549 5.31533 5.50133 5.63020 5.71348 5.82756 6.18684 6.22095 6.83251 7.15123 7.35626 8.90257 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053170 B = 0.004455 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.490923 B = 6283.303067 C = 6346.975046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 H 0.113 0.887 4 C -0.114 4.114 5 C 0.090 3.910 6 N -0.619 5.619 7 C 0.130 3.870 8 C -0.119 4.119 9 C -0.095 4.095 10 C 0.023 3.977 11 C -0.544 4.544 12 H 0.062 0.938 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.498 3.502 20 O -0.591 6.591 21 H 0.101 0.899 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.067 0.933 34 H -0.006 1.006 35 H -0.020 1.020 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 12.926 17.366 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 H 0.132 0.868 4 C -0.151 4.151 5 C -0.031 4.031 6 N -0.351 5.351 7 C 0.008 3.992 8 C -0.158 4.158 9 C -0.133 4.133 10 C -0.014 4.014 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.201 4.201 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.205 1.205 19 C 0.287 3.713 20 O -0.472 6.472 21 H 0.120 0.880 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.012 0.988 35 H -0.002 1.002 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.981 12.994 16.716 21.750 hybrid contribution -0.195 -0.810 -1.218 1.475 sum 4.787 12.184 15.498 20.287 Atomic orbital electron populations 1.21659 0.91576 1.02299 1.03587 1.22008 0.98419 1.00914 0.92948 0.86848 1.22757 1.03936 0.92146 0.96250 1.22450 1.03514 0.99381 0.77788 1.48580 1.61081 1.14456 1.10945 1.21410 0.95073 0.89538 0.93166 1.21829 0.98272 0.96879 0.98806 1.21374 0.98281 0.96130 0.97562 1.19022 0.94072 0.93796 0.94552 1.21765 0.94147 1.15607 1.26702 0.91940 1.26048 0.95203 1.00131 0.98694 1.70120 1.04807 1.37999 1.44727 0.85342 0.78995 0.78285 0.78082 1.18400 1.20025 1.20515 1.21855 0.76304 0.82985 0.90162 1.90677 1.58189 1.73665 1.24685 0.87993 0.93063 0.93624 0.88254 0.86215 0.88028 0.90604 0.91886 0.87361 0.91678 0.95208 0.93598 0.91455 0.98767 1.00157 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.17 71.98 0.66 -1.57 16 2 C -0.12 -2.17 3.53 -10.80 -0.04 -2.20 16 3 H 0.11 1.78 8.14 -2.38 -0.02 1.77 16 4 C -0.11 -1.15 6.71 31.65 0.21 -0.94 16 5 C 0.09 1.36 7.35 86.83 0.64 2.00 16 6 N -0.62 -15.80 2.93 -817.98 -2.40 -18.20 16 7 C 0.13 3.76 5.93 86.38 0.51 4.27 16 8 C -0.12 -4.34 5.54 30.60 0.17 -4.17 16 9 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 10 C 0.02 1.26 4.97 29.85 0.15 1.41 16 11 C -0.54 -32.14 9.11 25.60 0.23 -31.91 16 12 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 14 N -0.94 -58.83 13.29 21.44 0.28 -58.54 16 15 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 C 0.50 14.70 7.35 87.90 0.65 15.35 16 20 O -0.59 -23.94 17.60 -3.02 -0.05 -24.00 16 21 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.12 0.60 7.90 -2.39 -0.02 0.58 16 26 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 29 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 36 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -77.03 300.81 4.68 -72.35 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.02 Total: 2.49 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.80 Total: -21.42 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -2.11 Total: -76.75 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -77.03 4.68 -72.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399704487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.119 kcal (2) G-P(sol) polarization free energy of solvation -77.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds