Wall clock time and date at job start Mon Mar 30 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 110.43832 * 2 1 4 4 C 1.54861 * 110.46985 * 237.31665 * 2 1 3 5 5 C 1.54480 * 101.66110 * 216.51602 * 4 2 1 6 6 N 1.46760 * 105.54782 * 25.43666 * 5 4 2 7 7 C 1.46510 * 124.34729 * 162.95825 * 6 5 4 8 8 C 1.52998 * 109.46647 * 90.00137 * 7 6 5 9 9 C 1.53001 * 109.46997 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47475 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47233 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00588 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00463 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46826 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46997 * 119.99372 * 15 13 11 18 18 H 1.48492 * 109.47404 * 239.99982 * 15 13 11 19 19 C 1.34415 * 111.30303 * 342.93897 * 6 5 4 20 20 O 1.21284 * 124.94104 * 180.39099 * 19 6 5 21 21 H 1.08997 * 109.47052 * 298.91351 * 1 2 3 22 22 H 1.09000 * 109.46863 * 58.91576 * 1 2 3 23 23 H 1.09004 * 109.47330 * 178.91623 * 1 2 3 24 24 H 1.08997 * 111.03764 * 98.42333 * 4 2 1 25 25 H 1.09000 * 110.99735 * 334.59228 * 4 2 1 26 26 H 1.09002 * 110.24746 * 266.39097 * 5 4 2 27 27 H 1.09002 * 110.24236 * 144.47820 * 5 4 2 28 28 H 1.08995 * 109.46834 * 209.99444 * 7 6 5 29 29 H 1.08996 * 109.46956 * 330.00121 * 7 6 5 30 30 H 1.08998 * 109.47463 * 299.99767 * 8 7 6 31 31 H 1.08997 * 109.47907 * 60.00014 * 8 7 6 32 32 H 1.09003 * 109.47380 * 300.00061 * 9 8 7 33 33 H 1.09005 * 109.47198 * 60.00027 * 9 8 7 34 34 H 1.09003 * 109.47043 * 300.00483 * 10 9 8 35 35 H 1.08996 * 109.46780 * 59.99924 * 10 9 8 36 36 H 0.97003 * 120.00409 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0716 -0.7834 -1.2211 5 6 3.3199 -1.4695 -0.6233 6 7 3.0562 -1.5807 0.8161 7 6 3.7861 -2.4693 1.7240 8 6 4.9974 -1.7304 2.2963 9 6 5.7593 -2.6581 3.2448 10 6 6.9711 -1.9194 3.8167 11 6 7.7218 -2.8334 4.7505 12 1 7.3698 -3.8403 4.9196 13 6 8.8577 -2.3839 5.3898 14 7 9.2862 -1.1576 5.1844 15 14 9.7880 -3.5165 6.5479 16 1 9.1055 -4.8342 6.6058 17 1 11.1757 -3.6998 6.0522 18 1 9.8225 -2.9163 7.9057 19 6 2.0594 -0.7623 1.1947 20 8 1.6446 -0.6513 2.3289 21 1 -0.3633 0.4969 0.8995 22 1 -0.3633 0.5306 -0.8801 23 1 -0.3634 -1.0275 -0.0194 24 1 2.3480 -0.1062 -2.0292 25 1 1.3470 -1.5221 -1.5639 26 1 4.2060 -0.8593 -0.7985 27 1 3.4518 -2.4594 -1.0602 28 1 3.1295 -2.7757 2.5382 29 1 4.1227 -3.3502 1.1774 30 1 5.6541 -1.4238 1.4821 31 1 4.6609 -0.8494 2.8428 32 1 5.1025 -2.9643 4.0591 33 1 6.0960 -3.5393 2.6987 34 1 7.6278 -1.6135 3.0022 35 1 6.6348 -1.0381 4.3627 36 1 10.0855 -0.8414 5.6339 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399704489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:11 Heat of formation + Delta-G solvation = -64.140322 kcal Electronic energy + Delta-G solvation = -15240.838618 eV Core-core repulsion = 12723.799557 eV Total energy + Delta-G solvation = -2517.039061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47860 -36.40257 -35.42363 -33.54988 -32.02530 -29.60448 -28.07501 -25.58683 -24.48319 -22.38804 -21.24555 -20.06881 -19.12639 -16.92639 -16.32711 -16.14180 -15.23046 -14.53172 -14.42629 -14.05824 -13.87487 -13.71380 -12.88902 -12.67907 -12.36471 -12.24353 -12.11975 -11.80484 -11.62120 -11.28923 -11.09232 -10.96993 -10.54863 -10.49783 -10.48170 -9.66335 -9.62107 -9.35815 -9.05444 -8.51229 -8.31582 -5.96318 -3.98565 2.67214 3.06926 3.33288 3.40475 3.44931 4.17777 4.29978 4.49048 4.54570 4.86262 5.10944 5.20433 5.27190 5.37434 5.39428 5.44096 5.51305 5.62781 5.67209 5.77393 5.82016 5.96674 6.03763 6.14258 6.49449 6.65582 6.79055 6.94461 7.18426 7.22320 7.72380 7.87526 8.04454 8.26611 8.47124 9.09067 9.65329 11.15128 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.062619 B = 0.004264 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.040267 B = 6564.625602 C = 6648.477985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 H 0.107 0.893 4 C -0.128 4.128 5 C 0.100 3.900 6 N -0.618 5.618 7 C 0.124 3.876 8 C -0.133 4.133 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.515 3.485 20 O -0.529 6.529 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 0.501 -15.371 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 H 0.125 0.875 4 C -0.166 4.166 5 C -0.024 4.024 6 N -0.351 5.351 7 C 0.003 3.997 8 C -0.171 4.171 9 C -0.146 4.146 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.302 3.698 20 O -0.405 6.405 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.588 0.609 -14.668 20.696 hybrid contribution 0.812 -0.514 0.610 1.138 sum -13.776 0.095 -14.058 19.683 Atomic orbital electron populations 1.21610 0.92396 1.02423 1.02622 1.21994 0.98134 1.00729 0.94099 0.87480 1.22749 0.97078 0.99647 0.97127 1.22079 0.98191 1.01607 0.80482 1.48409 1.35495 1.42039 1.09173 1.21613 0.93840 0.91680 0.92521 1.22021 0.95611 0.99877 0.99603 1.21572 0.98331 0.97735 0.96948 1.19094 0.91362 0.95565 0.95617 1.21321 1.09500 0.99107 1.25818 0.92642 1.25041 0.97478 0.95110 0.96946 1.69982 1.23935 1.16155 1.43524 0.86543 0.79709 0.81002 0.80798 1.19734 1.21048 1.21014 1.20835 0.79502 0.79809 0.89638 1.90720 1.61693 1.66199 1.21922 0.91525 0.91758 0.92444 0.89261 0.89999 0.90952 0.90389 0.90210 0.90602 0.92381 0.92141 0.93229 0.93350 0.96721 0.96650 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.08 37.16 0.34 -0.81 16 2 C -0.13 -1.26 3.54 -90.51 -0.32 -1.58 16 3 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -0.90 6.72 -24.97 -0.17 -1.07 16 5 C 0.10 0.91 7.34 -3.12 -0.02 0.88 16 6 N -0.62 -8.23 2.93 -172.41 -0.51 -8.73 16 7 C 0.12 1.84 5.93 -4.04 -0.02 1.82 16 8 C -0.13 -2.38 5.54 -26.73 -0.15 -2.53 16 9 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.52 7.56 7.45 -10.86 -0.08 7.48 16 20 O -0.53 -10.10 17.44 5.55 0.10 -10.00 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -33.91 300.66 -7.56 -41.47 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -6.28 Total: -5.69 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.11 Total: -11.74 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.23 Total: -35.64 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.10 Total: -10.00 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.91 -7.56 -41.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399704489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.672 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds