Wall clock time and date at job start Mon Mar 30 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 110.43832 * 2 1 4 4 C 1.54861 * 110.46985 * 237.31665 * 2 1 3 5 5 C 1.54480 * 101.66110 * 216.51602 * 4 2 1 6 6 N 1.46760 * 105.54782 * 25.43666 * 5 4 2 7 7 C 1.46510 * 124.34729 * 162.95825 * 6 5 4 8 8 C 1.52998 * 109.46647 * 90.00137 * 7 6 5 9 9 C 1.53001 * 109.46997 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47475 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47233 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00588 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00463 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46826 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46997 * 119.99372 * 15 13 11 18 18 H 1.48492 * 109.47404 * 239.99982 * 15 13 11 19 19 C 1.34415 * 111.30303 * 342.93897 * 6 5 4 20 20 O 1.21284 * 124.94104 * 180.39099 * 19 6 5 21 21 H 1.08997 * 109.47052 * 298.91351 * 1 2 3 22 22 H 1.09000 * 109.46863 * 58.91576 * 1 2 3 23 23 H 1.09004 * 109.47330 * 178.91623 * 1 2 3 24 24 H 1.08997 * 111.03764 * 98.42333 * 4 2 1 25 25 H 1.09000 * 110.99735 * 334.59228 * 4 2 1 26 26 H 1.09002 * 110.24746 * 266.39097 * 5 4 2 27 27 H 1.09002 * 110.24236 * 144.47820 * 5 4 2 28 28 H 1.08995 * 109.46834 * 209.99444 * 7 6 5 29 29 H 1.08996 * 109.46956 * 330.00121 * 7 6 5 30 30 H 1.08998 * 109.47463 * 299.99767 * 8 7 6 31 31 H 1.08997 * 109.47907 * 60.00014 * 8 7 6 32 32 H 1.09003 * 109.47380 * 300.00061 * 9 8 7 33 33 H 1.09005 * 109.47198 * 60.00027 * 9 8 7 34 34 H 1.09003 * 109.47043 * 300.00483 * 10 9 8 35 35 H 1.08996 * 109.46780 * 59.99924 * 10 9 8 36 36 H 0.97003 * 120.00409 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0716 -0.7834 -1.2211 5 6 3.3199 -1.4695 -0.6233 6 7 3.0562 -1.5807 0.8161 7 6 3.7861 -2.4693 1.7240 8 6 4.9974 -1.7304 2.2963 9 6 5.7593 -2.6581 3.2448 10 6 6.9711 -1.9194 3.8167 11 6 7.7218 -2.8334 4.7505 12 1 7.3698 -3.8403 4.9196 13 6 8.8577 -2.3839 5.3898 14 7 9.2862 -1.1576 5.1844 15 14 9.7880 -3.5165 6.5479 16 1 9.1055 -4.8342 6.6058 17 1 11.1757 -3.6998 6.0522 18 1 9.8225 -2.9163 7.9057 19 6 2.0594 -0.7623 1.1947 20 8 1.6446 -0.6513 2.3289 21 1 -0.3633 0.4969 0.8995 22 1 -0.3633 0.5306 -0.8801 23 1 -0.3634 -1.0275 -0.0194 24 1 2.3480 -0.1062 -2.0292 25 1 1.3470 -1.5221 -1.5639 26 1 4.2060 -0.8593 -0.7985 27 1 3.4518 -2.4594 -1.0602 28 1 3.1295 -2.7757 2.5382 29 1 4.1227 -3.3502 1.1774 30 1 5.6541 -1.4238 1.4821 31 1 4.6609 -0.8494 2.8428 32 1 5.1025 -2.9643 4.0591 33 1 6.0960 -3.5393 2.6987 34 1 7.6278 -1.6135 3.0022 35 1 6.6348 -1.0381 4.3627 36 1 10.0855 -0.8414 5.6339 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399704489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:11 Heat of formation + Delta-G solvation = -85.481450 kcal Electronic energy + Delta-G solvation = -15241.764039 eV Core-core repulsion = 12723.799557 eV Total energy + Delta-G solvation = -2517.964482 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47979 -37.60199 -36.87312 -35.18129 -33.69397 -30.89600 -29.34762 -27.05158 -25.67159 -23.86675 -22.24858 -21.83490 -20.17807 -18.48186 -17.79966 -17.38633 -16.54057 -16.36305 -15.90288 -14.97095 -14.89359 -14.67768 -14.46733 -13.95594 -13.87048 -13.58665 -13.27831 -13.04542 -12.89358 -12.72394 -12.38669 -12.32455 -12.15728 -11.98084 -11.74376 -11.47120 -11.39942 -11.17787 -10.68597 -10.58667 -9.67611 -8.22122 -6.34149 1.38487 1.39546 1.53037 1.56699 2.06941 2.39823 3.10656 3.36437 3.61468 3.92185 3.98652 4.07168 4.19845 4.37932 4.43227 4.52303 4.56320 4.66642 4.77144 4.82814 4.86386 4.95998 5.06569 5.12250 5.20185 5.21647 5.23526 5.31665 5.50201 5.63756 5.71455 5.82794 6.19207 6.22140 6.83285 7.16678 7.35537 8.90183 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.062619 B = 0.004264 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.040267 B = 6564.625602 C = 6648.477985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.124 4.124 3 H 0.115 0.885 4 C -0.112 4.112 5 C 0.090 3.910 6 N -0.621 5.621 7 C 0.131 3.869 8 C -0.119 4.119 9 C -0.095 4.095 10 C 0.022 3.978 11 C -0.544 4.544 12 H 0.062 0.938 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.496 3.504 20 O -0.588 6.588 21 H 0.044 0.956 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.066 0.934 34 H -0.006 1.006 35 H -0.020 1.020 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.712 -0.804 -17.335 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 H 0.133 0.867 4 C -0.149 4.149 5 C -0.032 4.032 6 N -0.352 5.352 7 C 0.009 3.991 8 C -0.158 4.158 9 C -0.133 4.133 10 C -0.015 4.015 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.793 3.207 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.205 1.205 19 C 0.286 3.714 20 O -0.469 6.469 21 H 0.063 0.937 22 H 0.114 0.886 23 H 0.074 0.926 24 H 0.138 0.862 25 H 0.116 0.884 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.013 0.987 35 H -0.001 1.001 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.752 -0.705 -16.684 22.282 hybrid contribution 0.885 -0.062 1.207 1.498 sum -13.868 -0.768 -15.477 20.795 Atomic orbital electron populations 1.21616 0.91557 1.02551 1.03020 1.22072 0.98780 1.00720 0.92981 0.86696 1.22799 0.96015 0.99870 0.96247 1.22444 0.99514 1.03419 0.77791 1.48588 1.34615 1.41102 1.10940 1.21401 0.92160 0.92485 0.93096 1.21831 0.96817 0.98361 0.98802 1.21374 0.96210 0.98216 0.97544 1.19024 0.93154 0.94732 0.94571 1.21763 1.10185 0.99733 1.26542 0.91944 1.26058 0.98538 0.96804 0.98738 1.70119 1.24598 1.18211 1.44693 0.85339 0.78278 0.78990 0.78081 1.18400 1.20027 1.20509 1.21864 0.79462 0.79907 0.90216 1.90674 1.63561 1.68047 1.24628 0.93703 0.88614 0.92594 0.86161 0.88450 0.90458 0.88130 0.91918 0.87434 0.91644 0.95160 0.93600 0.91484 0.98744 1.00131 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.08 71.98 0.65 -1.38 16 2 C -0.12 -2.21 3.54 -10.72 -0.04 -2.25 16 3 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.11 -1.14 6.72 31.73 0.21 -0.92 16 5 C 0.09 1.35 7.34 86.83 0.64 1.99 16 6 N -0.62 -15.84 2.93 -817.98 -2.40 -18.24 16 7 C 0.13 3.78 5.93 86.38 0.51 4.29 16 8 C -0.12 -4.35 5.54 30.59 0.17 -4.18 16 9 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 10 C 0.02 1.24 4.97 29.85 0.15 1.39 16 11 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 12 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 14 N -0.94 -58.81 13.29 21.45 0.28 -58.53 16 15 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 C 0.50 14.60 7.45 87.90 0.65 15.25 16 20 O -0.59 -23.59 17.44 -3.04 -0.05 -23.65 16 21 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.05 0.88 8.13 -2.38 -0.02 0.86 16 24 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 0.75 7.91 -2.39 -0.02 0.73 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 2.03 7.93 -2.39 -0.02 2.01 16 29 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.61 8.14 -2.38 -0.02 2.60 16 34 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 36 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -76.78 300.66 4.68 -72.10 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.02 Total: 2.40 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.80 Total: -21.43 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.11 Total: -76.76 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -76.78 4.68 -72.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399704489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.380 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds