Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00059 * 2 1 4 4 C 1.50697 * 109.47697 * 66.04212 * 3 2 1 5 5 H 1.08007 * 119.99727 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00473 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99656 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00085 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47126 * 90.00549 * 8 6 4 10 10 H 1.48506 * 109.46810 * 210.00067 * 8 6 4 11 11 H 1.48498 * 109.47294 * 329.99836 * 8 6 4 12 12 C 1.46899 * 110.99775 * 236.03795 * 2 1 3 13 13 C 1.52996 * 109.47635 * 293.95757 * 12 2 1 14 14 H 1.08994 * 109.48194 * 54.96996 * 13 12 2 15 15 C 1.52949 * 109.48380 * 175.00169 * 13 12 2 16 16 C 1.52957 * 109.81964 * 183.57886 * 15 13 12 17 17 C 1.53236 * 109.40295 * 296.39982 * 16 15 13 18 18 C 1.51267 * 108.53325 * 54.62432 * 17 16 15 19 19 O 1.20763 * 120.84770 * 128.63345 * 18 17 16 20 20 C 1.51265 * 118.30343 * 308.65411 * 18 17 16 21 21 H 1.09001 * 109.47335 * 183.96054 * 1 2 3 22 22 H 1.09002 * 109.47154 * 303.95844 * 1 2 3 23 23 H 1.09000 * 109.47048 * 63.95783 * 1 2 3 24 24 H 1.09001 * 109.47269 * 186.04595 * 3 2 1 25 25 H 1.09003 * 109.46994 * 306.04428 * 3 2 1 26 26 H 0.97010 * 120.00001 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46620 * 173.94932 * 12 2 1 28 28 H 1.09003 * 109.46499 * 53.95873 * 12 2 1 29 29 H 1.09004 * 109.41689 * 63.46823 * 15 13 12 30 30 H 1.09000 * 109.41675 * 303.68188 * 15 13 12 31 31 H 1.09004 * 109.48477 * 176.42400 * 16 15 13 32 32 H 1.09002 * 109.49513 * 56.38184 * 16 15 13 33 33 H 1.08991 * 109.62719 * 174.34284 * 17 16 15 34 34 H 1.09003 * 109.62204 * 294.91262 * 17 16 15 35 35 H 1.09010 * 109.62574 * 291.63216 * 20 18 17 36 36 H 1.09000 * 109.62515 * 171.06542 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0746 1.5114 2.0487 6 6 2.0277 3.3492 1.5288 7 7 2.7129 4.0015 0.6152 8 14 1.5838 4.1866 3.1384 9 1 2.6607 3.9496 4.1331 10 1 1.4321 5.6463 2.9116 11 1 0.3059 3.6298 3.6502 12 6 1.9954 -0.7661 -1.1375 13 6 1.6314 -2.2427 -0.9702 14 1 0.5532 -2.3391 -0.8426 15 6 2.0696 -3.0201 -2.2123 16 6 1.6302 -4.4803 -2.0922 17 6 2.3435 -5.1302 -0.9018 18 6 2.0783 -4.2958 0.3317 19 8 1.6641 -4.8041 1.3458 20 6 2.3447 -2.8084 0.2623 21 1 -0.3634 -1.0252 0.0710 22 1 -0.3633 0.5741 0.8524 23 1 -0.3633 0.4512 -0.9233 24 1 3.0797 1.3444 -0.1082 25 1 1.5611 1.9273 -0.8310 26 1 2.9875 4.9177 0.7771 27 1 3.0797 -0.6612 -1.1755 28 1 1.5610 -0.3874 -2.0627 29 1 3.1549 -2.9747 -2.3041 30 1 1.6135 -2.5762 -3.0972 31 1 1.8888 -5.0142 -3.0066 32 1 0.5521 -4.5242 -1.9380 33 1 1.9593 -6.1390 -0.7511 34 1 3.4158 -5.1688 -1.0942 35 1 3.4171 -2.6321 0.1778 36 1 1.9612 -2.3255 1.1611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403920733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -56.491081 kcal Electronic energy + Delta-G solvation = -15770.783847 eV Core-core repulsion = 13254.076481 eV Total energy + Delta-G solvation = -2516.707365 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84486 -37.46734 -35.58130 -32.69846 -31.31235 -28.88304 -27.25116 -26.41882 -24.07817 -22.32173 -20.90850 -19.81686 -19.07444 -16.37324 -15.80131 -15.46665 -14.92589 -14.76251 -14.53357 -14.39361 -13.82165 -13.29031 -13.15811 -12.73186 -12.15413 -11.97594 -11.86233 -11.76272 -11.21223 -11.01001 -11.00094 -10.85925 -10.62921 -10.54225 -10.42352 -10.21130 -9.80174 -9.34197 -9.09415 -8.42961 -7.23463 -6.02501 -4.03593 2.06051 3.33069 3.38900 3.42827 4.20123 4.42047 4.63705 4.73009 4.81360 5.03686 5.09736 5.32340 5.37023 5.49072 5.51451 5.55009 5.68890 5.81714 5.91297 5.97315 6.05849 6.13299 6.14218 6.24020 6.37577 6.51889 6.55550 6.77557 7.28877 7.34564 7.60814 7.80729 8.08704 8.19963 8.55634 9.04331 9.60811 11.08415 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042919 B = 0.005808 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.238166 B = 4820.165815 C = 5150.715586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.540 5.540 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.060 3.940 13 C -0.077 4.077 14 H 0.073 0.927 15 C -0.122 4.122 16 C -0.111 4.111 17 C -0.171 4.171 18 C 0.360 3.640 19 O -0.466 6.466 20 C -0.153 4.153 21 H 0.045 0.955 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.029 0.971 25 H -0.010 1.010 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -14.340 -6.838 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.264 5.264 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.069 4.069 13 C -0.096 4.096 14 H 0.091 0.909 15 C -0.160 4.160 16 C -0.148 4.148 17 C -0.209 4.209 18 C 0.236 3.764 19 O -0.340 6.340 20 C -0.191 4.191 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.008 0.992 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.699 -14.645 -5.900 15.804 hybrid contribution -0.349 1.053 -0.042 1.110 sum -1.048 -13.592 -5.942 14.871 Atomic orbital electron populations 1.22255 0.89120 0.99452 1.00513 1.62092 1.06827 1.17772 1.39739 1.19725 0.95318 0.81615 0.96586 1.21175 1.34725 0.96912 1.01703 0.91853 1.24985 0.95323 0.97361 0.96965 1.69962 1.38495 1.11469 1.34033 0.86502 0.78894 0.78400 0.83644 1.20622 1.21351 1.19863 1.22097 1.00176 0.91829 0.92794 1.21173 1.00294 0.95270 0.92859 0.90874 1.21651 1.01787 0.94297 0.98221 1.21484 1.00328 0.96070 0.96953 1.22338 1.03005 0.99983 0.95600 1.25123 0.71498 0.92352 0.87465 1.90386 1.33873 1.76071 1.33627 1.22249 1.02854 0.92168 1.01822 0.93612 0.90763 0.97168 0.95272 0.99209 0.92961 0.91222 0.95667 0.91279 0.91312 0.91026 0.91651 0.89937 0.88563 0.88658 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.14 60.07 0.55 1.23 16 2 N -0.54 -11.31 4.32 -244.37 -1.06 -12.36 16 3 C 0.19 4.96 4.72 -4.98 -0.02 4.94 16 4 C -0.51 -14.21 8.46 -34.44 -0.29 -14.50 16 5 H 0.06 1.77 7.12 -52.48 -0.37 1.39 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.06 1.00 4.35 -3.83 -0.02 0.98 16 13 C -0.08 -1.02 2.12 -90.53 -0.19 -1.21 16 14 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 15 C -0.12 -1.22 5.09 -26.78 -0.14 -1.36 16 16 C -0.11 -0.97 5.94 -26.63 -0.16 -1.13 16 17 C -0.17 -1.65 6.17 -27.48 -0.17 -1.82 16 18 C 0.36 4.84 6.72 -28.48 -0.19 4.65 16 19 O -0.47 -8.01 17.89 6.00 0.11 -7.90 16 20 C -0.15 -2.14 5.27 -27.49 -0.14 -2.29 16 21 H 0.05 0.76 6.37 -51.93 -0.33 0.43 16 22 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 25 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 28 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 36 H 0.10 1.74 7.92 -51.93 -0.41 1.33 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -30.99 289.86 -7.72 -38.71 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -5.98 Total: -4.50 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.87 Total: -9.05 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.32 Total: -38.34 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.11 Total: -7.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.99 -7.72 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403920733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.786 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds