Wall clock time and date at job start Mon Mar 30 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00059 * 2 1 4 4 C 1.50697 * 109.47697 * 66.04212 * 3 2 1 5 5 H 1.08007 * 119.99727 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00473 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99656 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00085 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47126 * 90.00549 * 8 6 4 10 10 H 1.48506 * 109.46810 * 210.00067 * 8 6 4 11 11 H 1.48498 * 109.47294 * 329.99836 * 8 6 4 12 12 C 1.46899 * 110.99775 * 236.03795 * 2 1 3 13 13 C 1.52996 * 109.47635 * 293.95757 * 12 2 1 14 14 H 1.08994 * 109.48194 * 54.96996 * 13 12 2 15 15 C 1.52949 * 109.48380 * 175.00169 * 13 12 2 16 16 C 1.52957 * 109.81964 * 183.57886 * 15 13 12 17 17 C 1.53236 * 109.40295 * 296.39982 * 16 15 13 18 18 C 1.51267 * 108.53325 * 54.62432 * 17 16 15 19 19 O 1.20763 * 120.84770 * 128.63345 * 18 17 16 20 20 C 1.51265 * 118.30343 * 308.65411 * 18 17 16 21 21 H 1.09001 * 109.47335 * 183.96054 * 1 2 3 22 22 H 1.09002 * 109.47154 * 303.95844 * 1 2 3 23 23 H 1.09000 * 109.47048 * 63.95783 * 1 2 3 24 24 H 1.09001 * 109.47269 * 186.04595 * 3 2 1 25 25 H 1.09003 * 109.46994 * 306.04428 * 3 2 1 26 26 H 0.97010 * 120.00001 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46620 * 173.94932 * 12 2 1 28 28 H 1.09003 * 109.46499 * 53.95873 * 12 2 1 29 29 H 1.09004 * 109.41689 * 63.46823 * 15 13 12 30 30 H 1.09000 * 109.41675 * 303.68188 * 15 13 12 31 31 H 1.09004 * 109.48477 * 176.42400 * 16 15 13 32 32 H 1.09002 * 109.49513 * 56.38184 * 16 15 13 33 33 H 1.08991 * 109.62719 * 174.34284 * 17 16 15 34 34 H 1.09003 * 109.62204 * 294.91262 * 17 16 15 35 35 H 1.09010 * 109.62574 * 291.63216 * 20 18 17 36 36 H 1.09000 * 109.62515 * 171.06542 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0746 1.5114 2.0487 6 6 2.0277 3.3492 1.5288 7 7 2.7129 4.0015 0.6152 8 14 1.5838 4.1866 3.1384 9 1 2.6607 3.9496 4.1331 10 1 1.4321 5.6463 2.9116 11 1 0.3059 3.6298 3.6502 12 6 1.9954 -0.7661 -1.1375 13 6 1.6314 -2.2427 -0.9702 14 1 0.5532 -2.3391 -0.8426 15 6 2.0696 -3.0201 -2.2123 16 6 1.6302 -4.4803 -2.0922 17 6 2.3435 -5.1302 -0.9018 18 6 2.0783 -4.2958 0.3317 19 8 1.6641 -4.8041 1.3458 20 6 2.3447 -2.8084 0.2623 21 1 -0.3634 -1.0252 0.0710 22 1 -0.3633 0.5741 0.8524 23 1 -0.3633 0.4512 -0.9233 24 1 3.0797 1.3444 -0.1082 25 1 1.5611 1.9273 -0.8310 26 1 2.9875 4.9177 0.7771 27 1 3.0797 -0.6612 -1.1755 28 1 1.5610 -0.3874 -2.0627 29 1 3.1549 -2.9747 -2.3041 30 1 1.6135 -2.5762 -3.0972 31 1 1.8888 -5.0142 -3.0066 32 1 0.5521 -4.5242 -1.9380 33 1 1.9593 -6.1390 -0.7511 34 1 3.4158 -5.1688 -1.0942 35 1 3.4171 -2.6321 0.1778 36 1 1.9612 -2.3255 1.1611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403920733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:48 Heat of formation + Delta-G solvation = -76.374005 kcal Electronic energy + Delta-G solvation = -15771.646035 eV Core-core repulsion = 13254.076481 eV Total energy + Delta-G solvation = -2517.569554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94220 -38.86776 -36.91018 -34.69132 -32.53003 -29.93084 -29.18861 -27.84538 -25.73838 -23.48064 -22.29787 -21.23921 -20.06133 -18.50219 -16.97371 -16.66049 -16.58492 -16.07836 -15.88508 -15.60135 -15.27558 -14.91771 -14.36048 -13.94367 -13.65014 -13.46008 -13.08456 -12.95465 -12.90509 -12.73080 -12.56125 -12.33527 -12.13344 -11.83570 -11.66735 -11.45009 -11.36981 -11.21093 -10.61425 -10.29750 -8.97269 -8.20835 -6.30422 0.99562 1.40522 1.41736 1.52749 2.39981 3.11664 3.21265 3.32371 3.77379 3.91313 3.99192 4.14094 4.31801 4.47356 4.50903 4.55787 4.62826 4.75522 4.78361 4.81387 4.91055 5.04864 5.08332 5.11671 5.18495 5.20048 5.31237 5.32885 5.46084 5.51278 5.65483 6.06396 6.34121 6.55718 6.67504 6.86101 7.39360 8.90044 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042919 B = 0.005808 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.238166 B = 4820.165815 C = 5150.715586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.549 5.549 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.059 3.941 13 C -0.066 4.066 14 H 0.068 0.932 15 C -0.117 4.117 16 C -0.104 4.104 17 C -0.163 4.163 18 C 0.364 3.636 19 O -0.511 6.511 20 C -0.155 4.155 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.012 0.988 24 H 0.006 0.994 25 H -0.038 1.038 26 H 0.264 0.736 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -15.754 -7.602 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.273 5.273 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.069 4.069 13 C -0.085 4.085 14 H 0.086 0.914 15 C -0.154 4.154 16 C -0.142 4.142 17 C -0.200 4.200 18 C 0.243 3.757 19 O -0.388 6.388 20 C -0.193 4.193 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.024 0.976 25 H -0.020 1.020 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.762 -16.077 -6.684 17.428 hybrid contribution -0.312 1.484 0.159 1.525 sum -1.074 -14.593 -6.525 16.021 Atomic orbital electron populations 1.22213 0.88087 1.00900 0.99624 1.62001 1.07838 1.15131 1.42320 1.19373 0.93749 0.83976 0.94778 1.21485 1.34771 0.97528 1.02470 0.92222 1.25870 0.95053 0.98042 1.00552 1.70077 1.39396 1.11918 1.36047 0.85421 0.78884 0.77346 0.79195 1.19925 1.20624 1.19097 1.22214 0.99925 0.93465 0.91313 1.21092 0.99888 0.93110 0.94414 0.91379 1.21638 1.02757 0.94730 0.96323 1.21487 0.99983 0.95044 0.97667 1.22351 1.04812 0.99434 0.93412 1.25533 0.69754 0.92177 0.88203 1.90380 1.36158 1.76582 1.35649 1.22226 1.03421 0.93052 1.00609 0.90705 0.92925 0.96944 0.97585 1.02010 0.92678 0.91439 0.95251 0.89944 0.90286 0.87929 0.92007 0.89101 0.86000 0.87591 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.14 127.69 1.17 2.73 16 2 N -0.55 -23.38 4.32 -927.05 -4.01 -27.39 16 3 C 0.21 11.07 4.72 85.56 0.40 11.48 16 4 C -0.52 -30.08 8.46 25.60 0.22 -29.87 16 5 H 0.06 3.39 7.12 -2.91 -0.02 3.37 16 6 C 0.00 0.16 5.46 84.65 0.46 0.62 16 7 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 8 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.06 1.94 4.35 86.30 0.38 2.31 16 13 C -0.07 -1.65 2.12 -10.74 -0.02 -1.68 16 14 H 0.07 1.78 6.33 -2.39 -0.02 1.76 16 15 C -0.12 -1.94 5.09 30.56 0.16 -1.79 16 16 C -0.10 -1.39 5.94 30.66 0.18 -1.21 16 17 C -0.16 -2.57 6.17 30.11 0.19 -2.39 16 18 C 0.36 9.32 6.72 29.46 0.20 9.52 16 19 O -0.51 -17.48 17.89 -1.46 -0.03 -17.51 16 20 C -0.16 -4.25 5.27 30.10 0.16 -4.09 16 21 H 0.07 2.45 6.37 -2.39 -0.02 2.43 16 22 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.01 0.34 7.93 -2.39 -0.02 0.33 16 25 H -0.04 -2.18 8.12 -2.39 -0.02 -2.20 16 26 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 27 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16 28 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.07 2.31 7.92 -2.39 -0.02 2.29 16 Total: -1.00 -68.63 289.86 2.79 -65.84 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.03 Total: 2.64 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 3.48 Total: -14.36 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -3.72 Total: -83.49 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.03 Total: -17.51 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.63 2.79 -65.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403920733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.531 kcal (2) G-P(sol) polarization free energy of solvation -68.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds