Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00065 * 2 1 4 4 N 1.34777 * 119.99866 * 180.02562 * 2 1 3 5 5 C 1.47423 * 125.64987 * 4.97619 * 4 2 1 6 6 C 1.54910 * 104.83261 * 204.16248 * 5 4 2 7 7 C 1.53002 * 111.00160 * 81.06901 * 6 5 4 8 8 C 1.52995 * 111.00162 * 204.91564 * 6 5 4 9 9 C 1.55152 * 101.58515 * 322.99564 * 6 5 4 10 10 C 1.47024 * 125.64652 * 185.01956 * 4 2 1 11 11 C 1.53002 * 109.88209 * 59.33651 * 10 4 2 12 12 C 1.50695 * 109.88659 * 298.32159 * 10 4 2 13 13 H 1.08005 * 119.99781 * 4.01985 * 12 10 4 14 14 C 1.37871 * 120.00403 * 184.01670 * 12 10 4 15 15 N 1.31518 * 120.00026 * 4.52823 * 14 12 10 16 16 Si 1.86808 * 120.00256 * 184.25112 * 14 12 10 17 17 H 1.48498 * 109.46977 * 270.27891 * 16 14 12 18 18 H 1.48496 * 109.46893 * 30.27643 * 16 14 12 19 19 H 1.48495 * 109.47160 * 150.27784 * 16 14 12 20 20 H 1.09008 * 109.46960 * 269.99789 * 1 2 3 21 21 H 1.09001 * 109.46911 * 29.99149 * 1 2 3 22 22 H 1.08997 * 109.47261 * 149.99871 * 1 2 3 23 23 H 1.08995 * 110.36824 * 323.00928 * 5 4 2 24 24 H 1.09003 * 110.36248 * 85.32346 * 5 4 2 25 25 H 1.08996 * 109.47130 * 66.86442 * 7 6 5 26 26 H 1.08997 * 109.47247 * 186.87037 * 7 6 5 27 27 H 1.09003 * 109.46775 * 306.86839 * 7 6 5 28 28 H 1.09003 * 109.47404 * 58.55441 * 8 6 5 29 29 H 1.09004 * 109.46867 * 178.54961 * 8 6 5 30 30 H 1.09000 * 109.47804 * 298.54569 * 8 6 5 31 31 H 1.09003 * 110.71384 * 277.13858 * 9 6 5 32 32 H 1.08994 * 110.71973 * 153.86408 * 9 6 5 33 33 H 1.09001 * 109.46579 * 293.68805 * 11 10 4 34 34 H 1.08995 * 109.47560 * 53.68751 * 11 10 4 35 35 H 1.08999 * 109.47265 * 173.69537 * 11 10 4 36 36 H 0.96997 * 119.99485 * 354.35436 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5769 -2.5080 -0.1050 6 6 2.6105 -3.4604 0.5463 7 6 2.4877 -3.4426 2.0713 8 6 2.4637 -4.8831 0.0031 9 6 3.9504 -2.8259 0.0889 10 6 3.6400 -1.3143 0.1039 11 6 4.1334 -0.6916 1.4115 12 6 4.3081 -0.6421 -1.0677 13 1 3.7156 -0.0955 -1.7865 14 6 5.6757 -0.7249 -1.2221 15 7 6.3869 -1.4634 -0.3984 16 14 6.5175 0.2058 -2.6059 17 1 6.5724 -0.6514 -3.8172 18 1 5.7520 1.4418 -2.9085 19 1 7.8971 0.5669 -2.1919 20 1 -0.3633 0.0000 1.0278 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8899 -0.5138 23 1 0.6333 -2.5425 0.4394 24 1 1.4223 -2.7739 -1.1508 25 1 1.5323 -3.8780 2.3640 26 1 3.3005 -4.0228 2.5080 27 1 2.5429 -2.4142 2.4282 28 1 2.5980 -4.8748 -1.0786 29 1 3.2179 -5.5253 0.4579 30 1 1.4706 -5.2631 0.2430 31 1 4.2099 -3.1562 -0.9170 32 1 4.7490 -3.0627 0.7918 33 1 3.9774 0.3868 1.3819 34 1 3.5787 -1.1161 2.2482 35 1 5.1957 -0.9017 1.5359 36 1 5.9623 -1.8837 0.3657 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584607573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -39.907936 kcal Electronic energy + Delta-G solvation = -17076.402175 eV Core-core repulsion = 14560.413909 eV Total energy + Delta-G solvation = -2515.988266 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73149 -37.23097 -33.96374 -32.66654 -30.18722 -28.38485 -27.07713 -26.25140 -25.05687 -24.50162 -20.61225 -18.79419 -18.37935 -16.77534 -15.54045 -15.21861 -14.42942 -13.89282 -13.67272 -13.59008 -13.36483 -12.75248 -12.39794 -12.35285 -12.12743 -11.78324 -11.58867 -11.44072 -11.18067 -11.03481 -10.80899 -10.78212 -10.48112 -10.15434 -9.96963 -9.92558 -9.67389 -8.81038 -8.67404 -8.20049 -7.46484 -6.20915 -3.96666 3.47437 3.50357 3.55498 3.71029 3.97393 4.60419 4.94005 5.16040 5.27958 5.43768 5.45943 5.59603 5.73553 5.76769 5.82717 5.88806 6.03071 6.06376 6.15476 6.17467 6.33242 6.36608 6.48074 6.59061 6.69840 6.80514 6.92608 6.99379 7.19199 7.50311 7.68057 8.17303 8.56688 8.67401 8.93144 9.17041 9.70677 11.10939 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.013031 C = 0.009951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.065468 B = 2148.172616 C = 2812.985590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.515 3.485 3 O -0.538 6.538 4 N -0.597 5.597 5 C 0.114 3.886 6 C -0.090 4.090 7 C -0.137 4.137 8 C -0.130 4.130 9 C -0.099 4.099 10 C 0.275 3.725 11 C -0.152 4.152 12 C -0.576 4.576 13 H 0.052 0.948 14 C 0.024 3.976 15 N -0.922 5.922 16 Si 1.069 2.931 17 H -0.290 1.290 18 H -0.289 1.289 19 H -0.285 1.285 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 -5.827 2.448 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.303 3.697 3 O -0.416 6.416 4 N -0.330 5.330 5 C -0.010 4.010 6 C -0.090 4.090 7 C -0.194 4.194 8 C -0.188 4.188 9 C -0.138 4.138 10 C 0.193 3.807 11 C -0.211 4.211 12 C -0.615 4.615 13 H 0.070 0.930 14 C -0.180 4.180 15 N -0.561 5.561 16 Si 0.898 3.102 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.211 1.211 20 H 0.100 0.900 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.214 -4.927 1.719 9.731 hybrid contribution -1.575 -0.315 0.702 1.753 sum -9.789 -5.242 2.420 11.365 Atomic orbital electron populations 1.21902 0.93830 1.03748 1.03494 1.20091 0.89184 0.83092 0.77349 1.90688 1.70379 1.30587 1.49913 1.48663 1.09132 1.04102 1.71095 1.22221 0.95614 0.83617 0.99516 1.21824 0.97678 0.94343 0.95201 1.21852 1.00552 1.02399 0.94551 1.21685 1.00800 0.95287 1.01006 1.22995 0.93610 0.96034 1.01172 1.18802 0.75751 0.91745 0.94446 1.22330 1.00952 1.01349 0.96438 1.22096 0.94256 1.35506 1.09649 0.93006 1.25627 0.94153 0.96215 1.02010 1.70841 1.40273 1.29913 1.15083 0.83549 0.75746 0.75974 0.74975 1.21697 1.21552 1.21103 0.89968 0.89817 0.91046 0.92193 0.92215 0.93480 0.92764 0.91759 0.92474 0.92582 0.93262 0.91014 0.91584 0.92878 0.95759 0.91850 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.72 36.01 0.35 -2.19 16 2 C 0.52 11.11 7.46 -10.99 -0.08 11.03 16 3 O -0.54 -14.18 15.55 5.55 0.09 -14.09 16 4 N -0.60 -12.77 2.80 -157.06 -0.44 -13.20 16 5 C 0.11 1.93 5.27 -2.53 -0.01 1.92 16 6 C -0.09 -1.50 0.96 -152.36 -0.15 -1.64 16 7 C -0.14 -2.07 8.46 37.16 0.31 -1.76 16 8 C -0.13 -1.80 8.66 37.15 0.32 -1.48 16 9 C -0.10 -2.16 3.61 -24.90 -0.09 -2.25 16 10 C 0.28 6.72 0.39 -131.99 -0.05 6.67 16 11 C -0.15 -3.75 7.91 37.16 0.29 -3.45 16 12 C -0.58 -16.43 7.33 -34.44 -0.25 -16.69 16 13 H 0.05 1.59 7.63 -52.48 -0.40 1.19 16 14 C 0.02 0.67 5.16 -17.82 -0.09 0.58 16 15 N -0.92 -26.85 12.87 55.43 0.71 -26.13 16 16 Si 1.07 26.25 29.91 -169.99 -5.08 21.17 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.07 0.91 6.99 -51.93 -0.36 0.54 16 23 H 0.06 0.84 7.26 -51.93 -0.38 0.46 16 24 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.09 5.35 -51.93 -0.28 0.81 16 28 H 0.06 0.81 8.11 -51.93 -0.42 0.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.70 7.71 -51.93 -0.40 1.30 16 32 H 0.07 1.48 6.34 -51.93 -0.33 1.15 16 33 H 0.05 1.43 7.05 -51.93 -0.37 1.06 16 34 H 0.02 0.52 5.49 -51.93 -0.28 0.23 16 35 H 0.06 1.64 5.84 -51.93 -0.30 1.33 16 36 H 0.27 7.70 3.43 -40.82 -0.14 7.56 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -32.57 275.46 -5.43 -38.00 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.41 Total: -0.63 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 0.55 Total: -9.26 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.27 Total: -39.34 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.57 -5.43 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.903 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds