Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00065 * 2 1 4 4 N 1.34777 * 119.99866 * 180.02562 * 2 1 3 5 5 C 1.47423 * 125.64987 * 4.97619 * 4 2 1 6 6 C 1.54910 * 104.83261 * 204.16248 * 5 4 2 7 7 C 1.53002 * 111.00160 * 81.06901 * 6 5 4 8 8 C 1.52995 * 111.00162 * 204.91564 * 6 5 4 9 9 C 1.55152 * 101.58515 * 322.99564 * 6 5 4 10 10 C 1.47024 * 125.64652 * 185.01956 * 4 2 1 11 11 C 1.53002 * 109.88209 * 59.33651 * 10 4 2 12 12 C 1.50695 * 109.88659 * 298.32159 * 10 4 2 13 13 H 1.08005 * 119.99781 * 4.01985 * 12 10 4 14 14 C 1.37871 * 120.00403 * 184.01670 * 12 10 4 15 15 N 1.31518 * 120.00026 * 4.52823 * 14 12 10 16 16 Si 1.86808 * 120.00256 * 184.25112 * 14 12 10 17 17 H 1.48498 * 109.46977 * 270.27891 * 16 14 12 18 18 H 1.48496 * 109.46893 * 30.27643 * 16 14 12 19 19 H 1.48495 * 109.47160 * 150.27784 * 16 14 12 20 20 H 1.09008 * 109.46960 * 269.99789 * 1 2 3 21 21 H 1.09001 * 109.46911 * 29.99149 * 1 2 3 22 22 H 1.08997 * 109.47261 * 149.99871 * 1 2 3 23 23 H 1.08995 * 110.36824 * 323.00928 * 5 4 2 24 24 H 1.09003 * 110.36248 * 85.32346 * 5 4 2 25 25 H 1.08996 * 109.47130 * 66.86442 * 7 6 5 26 26 H 1.08997 * 109.47247 * 186.87037 * 7 6 5 27 27 H 1.09003 * 109.46775 * 306.86839 * 7 6 5 28 28 H 1.09003 * 109.47404 * 58.55441 * 8 6 5 29 29 H 1.09004 * 109.46867 * 178.54961 * 8 6 5 30 30 H 1.09000 * 109.47804 * 298.54569 * 8 6 5 31 31 H 1.09003 * 110.71384 * 277.13858 * 9 6 5 32 32 H 1.08994 * 110.71973 * 153.86408 * 9 6 5 33 33 H 1.09001 * 109.46579 * 293.68805 * 11 10 4 34 34 H 1.08995 * 109.47560 * 53.68751 * 11 10 4 35 35 H 1.08999 * 109.47265 * 173.69537 * 11 10 4 36 36 H 0.96997 * 119.99485 * 354.35436 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5769 -2.5080 -0.1050 6 6 2.6105 -3.4604 0.5463 7 6 2.4877 -3.4426 2.0713 8 6 2.4637 -4.8831 0.0031 9 6 3.9504 -2.8259 0.0889 10 6 3.6400 -1.3143 0.1039 11 6 4.1334 -0.6916 1.4115 12 6 4.3081 -0.6421 -1.0677 13 1 3.7156 -0.0955 -1.7865 14 6 5.6757 -0.7249 -1.2221 15 7 6.3869 -1.4634 -0.3984 16 14 6.5175 0.2058 -2.6059 17 1 6.5724 -0.6514 -3.8172 18 1 5.7520 1.4418 -2.9085 19 1 7.8971 0.5669 -2.1919 20 1 -0.3633 0.0000 1.0278 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8899 -0.5138 23 1 0.6333 -2.5425 0.4394 24 1 1.4223 -2.7739 -1.1508 25 1 1.5323 -3.8780 2.3640 26 1 3.3005 -4.0228 2.5080 27 1 2.5429 -2.4142 2.4282 28 1 2.5980 -4.8748 -1.0786 29 1 3.2179 -5.5253 0.4579 30 1 1.4706 -5.2631 0.2430 31 1 4.2099 -3.1562 -0.9170 32 1 4.7490 -3.0627 0.7918 33 1 3.9774 0.3868 1.3819 34 1 3.5787 -1.1161 2.2482 35 1 5.1957 -0.9017 1.5359 36 1 5.9623 -1.8837 0.3657 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584607573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -61.287804 kcal Electronic energy + Delta-G solvation = -17077.329276 eV Core-core repulsion = 14560.413909 eV Total energy + Delta-G solvation = -2516.915367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37673 -38.90808 -35.83798 -34.29499 -31.99653 -29.87148 -28.38254 -27.69274 -27.01999 -26.27727 -22.36181 -20.43802 -20.06127 -18.58105 -17.22243 -16.81727 -16.09368 -15.76589 -15.31677 -15.04994 -14.80069 -14.47984 -14.07743 -13.77105 -13.42531 -13.24594 -13.12000 -12.88137 -12.82463 -12.67248 -12.59593 -12.58382 -12.06348 -12.01516 -11.79452 -11.41532 -11.34960 -10.69880 -10.56440 -10.26362 -9.26544 -8.45722 -6.22848 1.45067 1.55120 1.73062 1.88172 2.39643 2.56577 3.20835 3.58903 3.78667 3.99461 4.14217 4.39905 4.46367 4.50208 4.57884 4.60547 4.64109 4.66543 4.82131 4.87777 4.94262 5.00166 5.06238 5.08562 5.12435 5.17661 5.30449 5.38097 5.59505 5.60459 5.78183 6.12546 6.29662 6.73999 7.00331 7.43892 7.56672 8.86731 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.013031 C = 0.009951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.065468 B = 2148.172616 C = 2812.985590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.497 3.503 3 O -0.603 6.603 4 N -0.603 5.603 5 C 0.109 3.891 6 C -0.080 4.080 7 C -0.133 4.133 8 C -0.125 4.125 9 C -0.090 4.090 10 C 0.265 3.735 11 C -0.137 4.137 12 C -0.590 4.590 13 H 0.018 0.982 14 C -0.019 4.019 15 N -0.938 5.938 16 Si 1.104 2.896 17 H -0.269 1.269 18 H -0.295 1.295 19 H -0.280 1.280 20 H 0.111 0.889 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 -7.760 2.868 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.288 3.712 3 O -0.485 6.485 4 N -0.335 5.335 5 C -0.013 4.013 6 C -0.081 4.081 7 C -0.190 4.190 8 C -0.182 4.182 9 C -0.129 4.129 10 C 0.180 3.820 11 C -0.196 4.196 12 C -0.629 4.629 13 H 0.037 0.963 14 C -0.219 4.219 15 N -0.578 5.578 16 Si 0.929 3.071 17 H -0.194 1.194 18 H -0.221 1.221 19 H -0.205 1.205 20 H 0.129 0.871 21 H 0.108 0.892 22 H 0.120 0.880 23 H 0.124 0.876 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.669 -6.914 2.139 12.892 hybrid contribution -0.834 0.307 0.591 1.067 sum -11.502 -6.607 2.730 13.543 Atomic orbital electron populations 1.21867 0.87939 1.05593 1.05896 1.21428 0.91981 0.82068 0.75732 1.90654 1.72315 1.32823 1.52694 1.48775 1.08041 1.06191 1.70454 1.22548 0.97196 0.80917 1.00661 1.21858 0.93851 0.95822 0.96574 1.21820 1.02866 1.01376 0.92895 1.21653 1.03086 0.93108 1.00382 1.22674 0.96396 0.94552 0.99320 1.18701 0.77969 0.92994 0.92311 1.22149 1.00078 0.99160 0.98191 1.22319 0.94586 1.35451 1.10570 0.96306 1.26694 0.95063 0.96533 1.03583 1.70889 1.40441 1.30861 1.15654 0.83073 0.75032 0.75140 0.73895 1.19440 1.22135 1.20492 0.87059 0.89206 0.87986 0.87633 0.91783 0.89659 0.92452 0.93964 0.93263 0.92190 0.89668 0.93892 0.93104 0.96354 0.92876 0.93920 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.72 71.24 0.69 -3.37 16 2 C 0.50 21.15 7.46 87.66 0.65 21.81 16 3 O -0.60 -32.83 15.55 -3.05 -0.05 -32.88 16 4 N -0.60 -25.28 2.80 -769.22 -2.15 -27.43 16 5 C 0.11 3.31 5.27 86.86 0.46 3.77 16 6 C -0.08 -2.46 0.96 -50.79 -0.05 -2.51 16 7 C -0.13 -3.54 8.46 71.98 0.61 -2.93 16 8 C -0.12 -2.97 8.66 71.98 0.62 -2.35 16 9 C -0.09 -3.94 3.61 31.78 0.11 -3.83 16 10 C 0.26 13.17 0.39 3.21 0.00 13.17 16 11 C -0.14 -6.99 7.91 71.98 0.57 -6.42 16 12 C -0.59 -35.06 7.33 25.60 0.19 -34.87 16 13 H 0.02 1.20 7.63 -2.91 -0.02 1.18 16 14 C -0.02 -1.13 5.16 84.65 0.44 -0.69 16 15 N -0.94 -56.28 12.87 21.45 0.28 -56.00 16 16 Si 1.10 54.36 29.91 68.60 2.05 56.41 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 21 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.10 2.07 6.99 -2.39 -0.02 2.05 16 23 H 0.11 2.31 7.26 -2.39 -0.02 2.29 16 24 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.31 5.35 -2.39 -0.01 1.30 16 28 H 0.05 1.25 8.11 -2.39 -0.02 1.23 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 2.08 7.71 -2.39 -0.02 2.06 16 32 H 0.05 2.33 6.34 -2.39 -0.02 2.31 16 33 H 0.02 1.00 7.05 -2.39 -0.02 0.98 16 34 H 0.05 2.32 5.49 -2.39 -0.01 2.31 16 35 H 0.04 2.29 5.84 -2.39 -0.01 2.28 16 36 H 0.27 15.90 3.43 -92.71 -0.32 15.58 16 Total: -1.00 -76.18 275.46 5.93 -70.25 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.50 Total: 7.86 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.30 Total: -18.20 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.88 Total: -83.43 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.05 Total: -32.88 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 2.05 Total: 56.41 kcal Total: -76.18 5.93 -70.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.961 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds