Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21284 * 120.00477 * 2 1 4 4 N 1.34775 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.47428 * 125.64679 * 5.00698 * 4 2 1 6 6 C 1.54910 * 104.83298 * 155.90872 * 5 4 2 7 7 C 1.52997 * 111.00713 * 155.08215 * 6 5 4 8 8 C 1.53006 * 111.00284 * 278.93278 * 6 5 4 9 9 C 1.55153 * 101.58323 * 37.00287 * 6 5 4 10 10 C 1.47028 * 125.65180 * 185.04357 * 4 2 1 11 11 C 1.52997 * 109.87994 * 300.44370 * 10 4 2 12 12 C 1.50699 * 109.87618 * 61.60550 * 10 4 2 13 13 H 1.07991 * 120.00469 * 354.70516 * 12 10 4 14 14 C 1.37876 * 119.99529 * 174.70004 * 12 10 4 15 15 N 1.31511 * 120.00378 * 0.88661 * 14 12 10 16 16 Si 1.86808 * 119.99926 * 180.88246 * 14 12 10 17 17 H 1.48493 * 109.46910 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46888 * 120.00621 * 16 14 12 19 19 H 1.48501 * 109.47030 * 239.99941 * 16 14 12 20 20 H 1.09000 * 109.46696 * 269.99684 * 1 2 3 21 21 H 1.09000 * 109.47092 * 29.99402 * 1 2 3 22 22 H 1.09000 * 109.47507 * 149.99858 * 1 2 3 23 23 H 1.08997 * 110.36514 * 37.06690 * 5 4 2 24 24 H 1.08999 * 110.45949 * 274.79058 * 5 4 2 25 25 H 1.09008 * 109.47052 * 61.45007 * 7 6 5 26 26 H 1.08997 * 109.47183 * 181.45121 * 7 6 5 27 27 H 1.08997 * 109.46884 * 301.45449 * 7 6 5 28 28 H 1.08996 * 109.46997 * 51.58157 * 8 6 5 29 29 H 1.08991 * 109.47373 * 171.58262 * 8 6 5 30 30 H 1.09000 * 109.47064 * 291.58801 * 8 6 5 31 31 H 1.09007 * 110.71654 * 82.86225 * 9 6 5 32 32 H 1.08997 * 110.72550 * 206.13391 * 9 6 5 33 33 H 1.08998 * 109.47561 * 56.96213 * 11 10 4 34 34 H 1.09001 * 109.46732 * 176.96016 * 11 10 4 35 35 H 1.09003 * 109.47320 * 296.95535 * 11 10 4 36 36 H 0.97001 * 120.00530 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5769 -2.5079 -0.1057 6 6 2.7034 -3.4069 -0.6736 7 6 2.4856 -4.8706 -0.2848 8 6 2.8126 -3.2556 -2.1922 9 6 3.9545 -2.8235 0.0347 10 6 3.6400 -1.3143 0.1044 11 6 4.3211 -0.5867 -1.0563 12 6 4.1186 -0.7511 1.4177 13 1 3.4248 -0.2470 2.0741 14 6 5.4423 -0.8794 1.7813 15 7 6.2909 -1.4779 0.9743 16 14 6.0306 -0.2030 3.4202 17 1 4.8888 0.4188 4.1376 18 1 6.5874 -1.3084 4.2408 19 1 7.0833 0.8177 3.1853 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 0.7268 -2.4886 -0.7876 24 1 1.2663 -2.8640 0.8766 25 1 1.5427 -5.2215 -0.7043 26 1 3.3042 -5.4757 -0.6745 27 1 2.4547 -4.9572 0.8013 28 1 2.8867 -2.1986 -2.4476 29 1 3.7012 -3.7781 -2.5465 30 1 1.9277 -3.6823 -2.6645 31 1 4.0610 -3.2419 1.0357 32 1 4.8519 -3.0035 -0.5572 33 1 4.0203 0.4610 -1.0551 34 1 5.4031 -0.6541 -0.9426 35 1 4.0254 -1.0485 -1.9983 36 1 7.2223 -1.5679 1.2299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584607576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = -42.052043 kcal Electronic energy + Delta-G solvation = -17015.766105 eV Core-core repulsion = 14499.684864 eV Total energy + Delta-G solvation = -2516.081242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53372 -37.08027 -33.56034 -32.49152 -30.41807 -28.33305 -26.99624 -26.06036 -25.03736 -24.48601 -20.61561 -18.51560 -18.07748 -16.40860 -15.44977 -15.01044 -14.57293 -14.10367 -13.57701 -13.54474 -13.19274 -12.45255 -12.31993 -12.10116 -11.94136 -11.64908 -11.55494 -11.34383 -11.16081 -10.89503 -10.78584 -10.58186 -10.36732 -10.32000 -10.05827 -9.73940 -9.44943 -8.86210 -8.61962 -8.29216 -7.43535 -5.97650 -4.00814 3.32412 3.40568 3.46279 3.60828 4.09567 4.49963 5.08937 5.27598 5.36616 5.39976 5.55237 5.66597 5.80790 5.91407 5.95706 6.01756 6.14381 6.18695 6.27152 6.33711 6.49809 6.56302 6.68138 6.84967 7.00447 7.05904 7.19351 7.41492 7.51198 7.81454 7.94350 8.11363 8.37272 8.74856 8.99495 9.24700 9.64074 11.07346 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.012970 C = 0.009996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.018614 B = 2158.301362 C = 2800.334977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.516 3.484 3 O -0.544 6.544 4 N -0.600 5.600 5 C 0.114 3.886 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.135 4.135 9 C -0.076 4.076 10 C 0.287 3.713 11 C -0.146 4.146 12 C -0.499 4.499 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.016 0.984 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 -5.975 -3.626 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.304 3.696 3 O -0.422 6.422 4 N -0.333 5.333 5 C -0.010 4.010 6 C -0.096 4.096 7 C -0.187 4.187 8 C -0.192 4.192 9 C -0.115 4.115 10 C 0.205 3.795 11 C -0.204 4.204 12 C -0.538 4.538 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.102 0.898 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.179 -5.382 -3.628 10.441 hybrid contribution 0.315 0.262 0.962 1.046 sum -7.864 -5.119 -2.666 9.755 Atomic orbital electron populations 1.21922 0.94064 1.03442 1.03679 1.20042 0.89146 0.83134 0.77293 1.90661 1.70390 1.30704 1.50480 1.48841 1.09869 1.03982 1.70622 1.22213 0.95416 0.84065 0.99295 1.21905 0.97908 0.94170 0.95615 1.21673 1.00601 0.95195 1.01181 1.21831 1.00416 1.02457 0.94447 1.22629 0.94169 0.95367 0.99302 1.18695 0.73956 0.92155 0.94694 1.22186 1.03358 0.99742 0.95142 1.21269 0.94278 1.35825 1.02429 0.92597 1.24821 0.96517 0.95263 0.97118 1.69921 1.03646 1.43535 1.35818 0.86499 0.78691 0.78628 0.83976 1.19959 1.21165 1.21053 0.89841 0.90062 0.91102 0.92438 0.92366 0.93520 0.92674 0.92607 0.91692 0.92822 0.93859 0.91811 0.90796 0.93630 0.90062 0.96558 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.95 36.00 0.36 -2.24 16 2 C 0.52 11.15 7.46 -10.99 -0.08 11.07 16 3 O -0.54 -14.24 15.40 5.55 0.09 -14.15 16 4 N -0.60 -12.88 2.79 -157.07 -0.44 -13.32 16 5 C 0.11 1.95 5.52 -2.53 -0.01 1.93 16 6 C -0.10 -1.62 0.96 -152.36 -0.15 -1.77 16 7 C -0.13 -1.81 8.66 37.16 0.32 -1.49 16 8 C -0.13 -2.13 8.31 37.16 0.31 -1.82 16 9 C -0.08 -1.67 3.75 -24.90 -0.09 -1.76 16 10 C 0.29 7.02 0.39 -131.99 -0.05 6.97 16 11 C -0.15 -3.69 8.19 37.16 0.30 -3.38 16 12 C -0.50 -13.97 7.53 -34.44 -0.26 -14.23 16 13 H 0.06 1.67 7.73 -52.49 -0.41 1.26 16 14 C 0.06 1.77 5.14 -17.82 -0.09 1.68 16 15 N -0.89 -24.56 10.41 55.43 0.58 -23.99 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 21 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.07 0.89 6.51 -51.93 -0.34 0.55 16 23 H 0.06 0.82 6.78 -51.93 -0.35 0.47 16 24 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.06 1.15 5.52 -51.93 -0.29 0.87 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.51 7.69 -51.92 -0.40 1.11 16 32 H 0.07 1.73 7.47 -51.93 -0.39 1.34 16 33 H 0.04 1.23 6.46 -51.93 -0.34 0.90 16 34 H 0.08 2.21 6.34 -51.93 -0.33 1.88 16 35 H 0.02 0.36 5.38 -51.93 -0.28 0.08 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 278.50 15.07 4.20 4.20 Total: -1.00 -30.84 278.50 -5.67 -36.51 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.62 Total: -1.16 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 0.55 Total: -5.04 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.14 Total: -37.31 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.09 Total: -14.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.84 -5.67 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.544 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds