Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21284 * 120.00477 * 2 1 4 4 N 1.34775 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.47428 * 125.64679 * 5.00698 * 4 2 1 6 6 C 1.54910 * 104.83298 * 155.90872 * 5 4 2 7 7 C 1.52997 * 111.00713 * 155.08215 * 6 5 4 8 8 C 1.53006 * 111.00284 * 278.93278 * 6 5 4 9 9 C 1.55153 * 101.58323 * 37.00287 * 6 5 4 10 10 C 1.47028 * 125.65180 * 185.04357 * 4 2 1 11 11 C 1.52997 * 109.87994 * 300.44370 * 10 4 2 12 12 C 1.50699 * 109.87618 * 61.60550 * 10 4 2 13 13 H 1.07991 * 120.00469 * 354.70516 * 12 10 4 14 14 C 1.37876 * 119.99529 * 174.70004 * 12 10 4 15 15 N 1.31511 * 120.00378 * 0.88661 * 14 12 10 16 16 Si 1.86808 * 119.99926 * 180.88246 * 14 12 10 17 17 H 1.48493 * 109.46910 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46888 * 120.00621 * 16 14 12 19 19 H 1.48501 * 109.47030 * 239.99941 * 16 14 12 20 20 H 1.09000 * 109.46696 * 269.99684 * 1 2 3 21 21 H 1.09000 * 109.47092 * 29.99402 * 1 2 3 22 22 H 1.09000 * 109.47507 * 149.99858 * 1 2 3 23 23 H 1.08997 * 110.36514 * 37.06690 * 5 4 2 24 24 H 1.08999 * 110.45949 * 274.79058 * 5 4 2 25 25 H 1.09008 * 109.47052 * 61.45007 * 7 6 5 26 26 H 1.08997 * 109.47183 * 181.45121 * 7 6 5 27 27 H 1.08997 * 109.46884 * 301.45449 * 7 6 5 28 28 H 1.08996 * 109.46997 * 51.58157 * 8 6 5 29 29 H 1.08991 * 109.47373 * 171.58262 * 8 6 5 30 30 H 1.09000 * 109.47064 * 291.58801 * 8 6 5 31 31 H 1.09007 * 110.71654 * 82.86225 * 9 6 5 32 32 H 1.08997 * 110.72550 * 206.13391 * 9 6 5 33 33 H 1.08998 * 109.47561 * 56.96213 * 11 10 4 34 34 H 1.09001 * 109.46732 * 176.96016 * 11 10 4 35 35 H 1.09003 * 109.47320 * 296.95535 * 11 10 4 36 36 H 0.97001 * 120.00530 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5769 -2.5079 -0.1057 6 6 2.7034 -3.4069 -0.6736 7 6 2.4856 -4.8706 -0.2848 8 6 2.8126 -3.2556 -2.1922 9 6 3.9545 -2.8235 0.0347 10 6 3.6400 -1.3143 0.1044 11 6 4.3211 -0.5867 -1.0563 12 6 4.1186 -0.7511 1.4177 13 1 3.4248 -0.2470 2.0741 14 6 5.4423 -0.8794 1.7813 15 7 6.2909 -1.4779 0.9743 16 14 6.0306 -0.2030 3.4202 17 1 4.8888 0.4188 4.1376 18 1 6.5874 -1.3084 4.2408 19 1 7.0833 0.8177 3.1853 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 0.7268 -2.4886 -0.7876 24 1 1.2663 -2.8640 0.8766 25 1 1.5427 -5.2215 -0.7043 26 1 3.3042 -5.4757 -0.6745 27 1 2.4547 -4.9572 0.8013 28 1 2.8867 -2.1986 -2.4476 29 1 3.7012 -3.7781 -2.5465 30 1 1.9277 -3.6823 -2.6645 31 1 4.0610 -3.2419 1.0357 32 1 4.8519 -3.0035 -0.5572 33 1 4.0203 0.4610 -1.0551 34 1 5.4031 -0.6541 -0.9426 35 1 4.0254 -1.0485 -1.9983 36 1 7.2223 -1.5679 1.2299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584607576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = -61.803081 kcal Electronic energy + Delta-G solvation = -17016.622575 eV Core-core repulsion = 14499.684864 eV Total energy + Delta-G solvation = -2516.937711 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17502 -38.74332 -35.42015 -34.15404 -32.24826 -29.79135 -28.35167 -27.51294 -27.06726 -26.16342 -22.36725 -20.03285 -19.78075 -18.24742 -17.22633 -16.70573 -16.34888 -15.85402 -15.14576 -14.96039 -14.63368 -14.20253 -13.83405 -13.51606 -13.45549 -13.11052 -13.03728 -13.00010 -12.78328 -12.64173 -12.51895 -12.39000 -12.21088 -11.98408 -11.90116 -11.23567 -11.19218 -10.72991 -10.52578 -10.23237 -9.19783 -8.09321 -6.19213 1.32656 1.36150 1.46330 1.97163 2.38216 2.59234 3.15718 3.73505 3.91116 4.11616 4.25420 4.51033 4.60043 4.66736 4.67008 4.73362 4.84047 4.92666 4.95698 5.03215 5.07230 5.13161 5.23893 5.25885 5.32489 5.37247 5.53251 5.57402 5.68833 5.73882 5.97025 6.12638 6.36122 6.77306 7.15112 7.42076 7.64103 8.92727 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.012970 C = 0.009996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.018614 B = 2158.301362 C = 2800.334977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.498 3.502 3 O -0.606 6.606 4 N -0.606 5.606 5 C 0.109 3.891 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.131 4.131 9 C -0.066 4.066 10 C 0.279 3.721 11 C -0.132 4.132 12 C -0.519 4.519 13 H 0.026 0.974 14 C 0.025 3.975 15 N -0.902 5.902 16 Si 0.944 3.056 17 H -0.283 1.283 18 H -0.270 1.270 19 H -0.284 1.284 20 H 0.100 0.900 21 H 0.092 0.908 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 -7.867 -4.115 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.289 3.711 3 O -0.488 6.488 4 N -0.338 5.338 5 C -0.013 4.013 6 C -0.088 4.088 7 C -0.180 4.180 8 C -0.188 4.188 9 C -0.105 4.105 10 C 0.195 3.805 11 C -0.190 4.190 12 C -0.558 4.558 13 H 0.045 0.955 14 C -0.175 4.175 15 N -0.541 5.541 16 Si 0.771 3.229 17 H -0.209 1.209 18 H -0.195 1.195 19 H -0.210 1.210 20 H 0.118 0.882 21 H 0.111 0.889 22 H 0.124 0.876 23 H 0.118 0.882 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.384 -7.318 -4.121 13.355 hybrid contribution 1.018 0.876 1.103 1.738 sum -9.366 -6.442 -3.018 11.761 Atomic orbital electron populations 1.21876 0.88384 1.05777 1.05412 1.21320 0.91865 0.82159 0.75797 1.90626 1.72258 1.32832 1.53104 1.48921 1.08855 1.06019 1.69997 1.22525 0.96371 0.81412 1.00969 1.21923 0.94784 0.96054 0.96032 1.21631 1.02571 0.92679 1.01161 1.21789 1.02348 1.01104 0.93510 1.22314 0.95994 0.93939 0.98295 1.18573 0.76248 0.93325 0.92344 1.22011 1.01692 0.98257 0.97081 1.21436 0.94355 1.36218 1.03834 0.95529 1.25405 0.96657 0.95643 0.99763 1.70000 1.03705 1.43723 1.36652 0.85734 0.77775 0.78380 0.81057 1.20861 1.19503 1.21001 0.88194 0.88937 0.87572 0.88210 0.91440 0.90027 0.92394 0.93074 0.94145 0.92761 0.90086 0.94222 0.93022 0.96642 0.92708 0.94254 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 9.95 71.23 0.71 -3.50 16 2 C 0.50 21.27 7.46 87.66 0.65 21.92 16 3 O -0.61 -32.72 15.40 -3.04 -0.05 -32.77 16 4 N -0.61 -25.56 2.79 -769.22 -2.14 -27.71 16 5 C 0.11 3.37 5.52 86.85 0.48 3.85 16 6 C -0.09 -2.74 0.96 -50.79 -0.05 -2.79 16 7 C -0.12 -2.98 8.66 71.98 0.62 -2.36 16 8 C -0.13 -3.71 8.31 71.98 0.60 -3.11 16 9 C -0.07 -2.93 3.75 31.78 0.12 -2.81 16 10 C 0.28 13.92 0.39 3.20 0.00 13.92 16 11 C -0.13 -6.92 8.19 71.98 0.59 -6.33 16 12 C -0.52 -30.16 7.53 25.60 0.19 -29.97 16 13 H 0.03 1.65 7.73 -2.92 -0.02 1.63 16 14 C 0.03 1.43 5.14 84.65 0.43 1.86 16 15 N -0.90 -51.14 10.41 21.45 0.22 -50.92 16 16 Si 0.94 46.12 29.54 68.60 2.03 48.15 16 17 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 20 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 21 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.11 2.11 6.51 -2.39 -0.02 2.09 16 23 H 0.10 2.27 6.78 -2.39 -0.02 2.25 16 24 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 25 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 28 H 0.04 1.34 5.52 -2.39 -0.01 1.33 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.89 7.69 -2.38 -0.02 1.88 16 32 H 0.05 2.46 7.47 -2.39 -0.02 2.44 16 33 H 0.01 0.84 6.46 -2.39 -0.02 0.83 16 34 H 0.05 3.11 6.34 -2.39 -0.02 3.09 16 35 H 0.04 1.81 5.38 -2.39 -0.01 1.80 16 36 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -71.58 278.50 5.46 -66.12 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.05 Total: 6.45 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.35 Total: -9.32 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.92 Total: -78.63 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.77 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.58 5.46 -66.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.316 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds