Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46658 * 2 1 4 4 C 1.52992 * 109.47000 * 119.99972 * 2 1 3 5 5 C 1.50699 * 109.46993 * 184.05894 * 4 2 1 6 6 H 1.08003 * 120.00441 * 5.00181 * 5 4 2 7 7 C 1.37885 * 120.00152 * 185.00325 * 5 4 2 8 8 N 1.31515 * 119.99748 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47177 * 119.99944 * 9 7 5 12 12 H 1.48501 * 109.46960 * 240.00027 * 9 7 5 13 13 N 1.46901 * 109.47318 * 240.00621 * 2 1 3 14 14 C 1.47046 * 111.00086 * 72.10053 * 13 2 1 15 15 C 1.53679 * 108.87864 * 181.79378 * 14 13 2 16 16 H 1.09004 * 112.54565 * 186.67329 * 15 14 13 17 17 C 1.54717 * 107.84819 * 310.91736 * 15 14 13 18 18 C 1.54546 * 103.82031 * 88.33600 * 17 15 14 19 19 C 1.54720 * 103.82106 * 0.02562 * 18 17 15 20 20 H 1.08996 * 112.15701 * 147.18718 * 19 18 17 21 21 C 1.47056 * 110.99642 * 307.84315 * 13 2 1 22 22 O 1.44643 * 104.34021 * 25.53143 * 19 18 17 23 23 H 1.09002 * 109.47260 * 59.99761 * 1 2 3 24 24 H 1.08999 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47542 * 299.99960 * 1 2 3 26 26 H 1.09002 * 109.47606 * 304.05874 * 4 2 1 27 27 H 1.09006 * 109.47283 * 64.06315 * 4 2 1 28 28 H 0.97000 * 119.99789 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.56795 * 61.98148 * 14 13 2 30 30 H 1.08999 * 109.56996 * 301.61543 * 14 13 2 31 31 H 1.09001 * 110.55709 * 206.92525 * 17 15 14 32 32 H 1.08998 * 110.55397 * 329.60410 * 17 15 14 33 33 H 1.09008 * 110.55256 * 118.58214 * 18 17 15 34 34 H 1.09004 * 110.55872 * 241.26852 * 18 17 15 35 35 H 1.08996 * 109.57141 * 58.38756 * 21 13 2 36 36 H 1.08997 * 109.56877 * 298.03046 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5436 -0.6347 1.3005 6 1 4.0763 -0.0495 0.5655 7 6 4.2394 -1.3028 2.2858 8 7 3.5907 -2.0151 3.1810 9 14 6.1033 -1.1961 2.3489 10 1 6.5880 -0.3389 1.2374 11 1 6.5217 -0.6082 3.6467 12 1 6.6818 -2.5570 2.2124 13 7 2.0197 -0.6924 -1.1995 14 6 1.7976 0.1203 -2.4047 15 6 2.2849 -0.6663 -3.6317 16 1 2.2558 -0.0741 -4.5463 17 6 3.7063 -1.1938 -3.3229 18 6 3.4539 -2.5566 -2.6392 19 6 1.9118 -2.6812 -2.6215 20 1 1.5818 -3.7153 -2.7204 21 6 1.4013 -2.0201 -1.3309 22 8 1.4733 -1.8599 -3.7285 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6185 -0.2511 2.1377 27 1 1.7373 -1.7678 1.2135 28 1 4.0803 -2.4853 3.8740 29 1 2.3556 1.0532 -2.3239 30 1 0.7343 0.3367 -2.5083 31 1 4.2736 -1.3268 -4.2441 32 1 4.2280 -0.5152 -2.6480 33 1 3.8962 -3.3648 -3.2219 34 1 3.8520 -2.5554 -1.6245 35 1 0.3175 -1.9149 -1.3789 36 1 1.6724 -2.6356 -0.4733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = -40.207134 kcal Electronic energy + Delta-G solvation = -16857.962419 eV Core-core repulsion = 14341.961179 eV Total energy + Delta-G solvation = -2516.001240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41589 -36.53595 -32.80081 -31.75793 -31.10389 -30.14052 -27.29578 -25.07176 -24.26295 -22.88158 -20.73088 -19.91044 -18.54604 -16.56441 -16.18738 -15.31702 -14.97766 -14.33461 -14.33244 -13.77528 -13.58790 -13.02642 -12.79286 -12.23447 -12.01336 -11.75767 -11.43131 -11.24899 -11.17018 -10.93337 -10.69420 -10.51545 -10.48302 -10.41180 -10.03604 -9.92407 -9.36775 -9.07250 -8.92607 -8.27720 -7.45220 -5.90084 -3.87656 3.36180 3.44175 3.48740 4.21437 4.51819 4.55873 5.06164 5.13100 5.19585 5.32499 5.46929 5.48579 5.70362 5.75652 5.80972 5.90312 5.99156 6.01656 6.08973 6.13511 6.28692 6.32345 6.42879 6.53240 6.56487 6.67162 6.74624 6.99139 7.16870 7.51415 7.65920 7.88690 8.00668 8.10941 8.56708 9.17829 9.73730 11.21887 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.010130 C = 0.008620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.716885 B = 2763.528239 C = 3247.421211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.031 3.969 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.502 5.502 14 C 0.026 3.974 15 C 0.072 3.928 16 H 0.105 0.895 17 C -0.132 4.132 18 C -0.135 4.135 19 C 0.071 3.929 20 H 0.107 0.893 21 C 0.031 3.969 22 O -0.380 6.380 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.015 0.985 27 H 0.022 0.978 28 H 0.256 0.744 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.036 0.964 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 1.290 -11.301 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.226 5.226 14 C -0.102 4.102 15 C 0.014 3.986 16 H 0.123 0.877 17 C -0.170 4.170 18 C -0.173 4.173 19 C 0.014 3.986 20 H 0.125 0.875 21 C -0.098 4.098 22 O -0.299 6.299 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.633 1.076 -11.253 11.607 hybrid contribution 0.266 0.174 0.259 0.410 sum -2.367 1.250 -10.994 11.315 Atomic orbital electron populations 1.22515 0.99795 1.01411 1.00592 1.21924 0.90083 0.98223 0.91929 0.91372 1.19179 0.96358 0.95520 0.89601 1.21162 0.91569 1.28672 1.11077 0.92268 1.24994 0.97909 0.95909 0.96034 1.69972 1.35031 1.32887 1.16537 0.86610 0.86597 0.77588 0.77620 1.19799 1.21453 1.21340 1.62284 1.57455 1.01724 1.01090 1.22797 0.98895 0.97136 0.91405 1.23415 0.90493 0.87533 0.97179 0.87699 1.22757 0.96417 0.97897 0.99884 1.22801 0.95234 0.96329 1.02890 1.23481 0.94468 0.94675 0.86021 0.87514 1.22820 0.96359 0.92420 0.98163 1.89175 1.60826 1.30122 1.49812 0.94198 0.92713 0.92574 0.96727 0.95997 0.93395 0.90437 0.94864 0.92490 0.89516 0.92518 0.88546 0.94615 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.42 37.16 0.31 -2.92 16 2 C 0.09 1.74 2.26 -67.72 -0.15 1.59 16 3 H 0.07 1.39 8.05 -51.93 -0.42 0.98 16 4 C 0.03 0.76 4.38 -27.89 -0.12 0.64 16 5 C -0.49 -13.26 8.81 -34.44 -0.30 -13.57 16 6 H 0.06 1.61 7.75 -52.48 -0.41 1.21 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.50 -9.39 3.36 -225.49 -0.76 -10.15 16 14 C 0.03 0.42 4.89 -3.39 -0.02 0.41 16 15 C 0.07 1.06 4.73 -25.47 -0.12 0.94 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -1.97 6.24 -25.02 -0.16 -2.13 16 18 C -0.13 -2.15 6.23 -25.01 -0.16 -2.31 16 19 C 0.07 1.14 4.73 -25.44 -0.12 1.02 16 20 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 21 C 0.03 0.55 4.26 -3.36 -0.01 0.54 16 22 O -0.38 -6.31 11.26 -35.23 -0.40 -6.71 16 23 H 0.04 0.64 6.74 -51.93 -0.35 0.28 16 24 H 0.05 0.96 6.28 -51.93 -0.33 0.64 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.02 0.58 6.48 -51.93 -0.34 0.24 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.54 6.66 -51.93 -0.35 0.19 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.41 7.82 -51.93 -0.41 1.01 16 33 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.10 1.79 7.82 -51.93 -0.41 1.39 16 35 H 0.04 0.64 6.11 -51.93 -0.32 0.32 16 36 H 0.09 1.90 6.55 -51.93 -0.34 1.56 16 LS Contribution 274.74 15.07 4.14 4.14 Total: -1.00 -29.34 274.74 -7.99 -37.33 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.75 Total: -0.75 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.95 Total: -14.45 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.02 Total: -36.23 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.40 Total: -6.71 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.34 -7.99 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.880 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds