Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46658 * 2 1 4 4 C 1.52992 * 109.47000 * 119.99972 * 2 1 3 5 5 C 1.50699 * 109.46993 * 184.05894 * 4 2 1 6 6 H 1.08003 * 120.00441 * 5.00181 * 5 4 2 7 7 C 1.37885 * 120.00152 * 185.00325 * 5 4 2 8 8 N 1.31515 * 119.99748 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47177 * 119.99944 * 9 7 5 12 12 H 1.48501 * 109.46960 * 240.00027 * 9 7 5 13 13 N 1.46901 * 109.47318 * 240.00621 * 2 1 3 14 14 C 1.47046 * 111.00086 * 72.10053 * 13 2 1 15 15 C 1.53679 * 108.87864 * 181.79378 * 14 13 2 16 16 H 1.09004 * 112.54565 * 186.67329 * 15 14 13 17 17 C 1.54717 * 107.84819 * 310.91736 * 15 14 13 18 18 C 1.54546 * 103.82031 * 88.33600 * 17 15 14 19 19 C 1.54720 * 103.82106 * 0.02562 * 18 17 15 20 20 H 1.08996 * 112.15701 * 147.18718 * 19 18 17 21 21 C 1.47056 * 110.99642 * 307.84315 * 13 2 1 22 22 O 1.44643 * 104.34021 * 25.53143 * 19 18 17 23 23 H 1.09002 * 109.47260 * 59.99761 * 1 2 3 24 24 H 1.08999 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47542 * 299.99960 * 1 2 3 26 26 H 1.09002 * 109.47606 * 304.05874 * 4 2 1 27 27 H 1.09006 * 109.47283 * 64.06315 * 4 2 1 28 28 H 0.97000 * 119.99789 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.56795 * 61.98148 * 14 13 2 30 30 H 1.08999 * 109.56996 * 301.61543 * 14 13 2 31 31 H 1.09001 * 110.55709 * 206.92525 * 17 15 14 32 32 H 1.08998 * 110.55397 * 329.60410 * 17 15 14 33 33 H 1.09008 * 110.55256 * 118.58214 * 18 17 15 34 34 H 1.09004 * 110.55872 * 241.26852 * 18 17 15 35 35 H 1.08996 * 109.57141 * 58.38756 * 21 13 2 36 36 H 1.08997 * 109.56877 * 298.03046 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5436 -0.6347 1.3005 6 1 4.0763 -0.0495 0.5655 7 6 4.2394 -1.3028 2.2858 8 7 3.5907 -2.0151 3.1810 9 14 6.1033 -1.1961 2.3489 10 1 6.5880 -0.3389 1.2374 11 1 6.5217 -0.6082 3.6467 12 1 6.6818 -2.5570 2.2124 13 7 2.0197 -0.6924 -1.1995 14 6 1.7976 0.1203 -2.4047 15 6 2.2849 -0.6663 -3.6317 16 1 2.2558 -0.0741 -4.5463 17 6 3.7063 -1.1938 -3.3229 18 6 3.4539 -2.5566 -2.6392 19 6 1.9118 -2.6812 -2.6215 20 1 1.5818 -3.7153 -2.7204 21 6 1.4013 -2.0201 -1.3309 22 8 1.4733 -1.8599 -3.7285 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6185 -0.2511 2.1377 27 1 1.7373 -1.7678 1.2135 28 1 4.0803 -2.4853 3.8740 29 1 2.3556 1.0532 -2.3239 30 1 0.7343 0.3367 -2.5083 31 1 4.2736 -1.3268 -4.2441 32 1 4.2280 -0.5152 -2.6480 33 1 3.8962 -3.3648 -3.2219 34 1 3.8520 -2.5554 -1.6245 35 1 0.3175 -1.9149 -1.3789 36 1 1.6724 -2.6356 -0.4733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = -58.782524 kcal Electronic energy + Delta-G solvation = -16858.767909 eV Core-core repulsion = 14341.961179 eV Total energy + Delta-G solvation = -2516.806730 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72867 -38.06515 -34.83721 -33.12928 -32.39972 -31.71290 -29.15960 -26.51377 -25.62956 -24.79998 -22.00454 -21.39733 -19.97691 -18.34685 -17.90262 -16.68083 -16.59011 -16.12185 -15.67197 -15.16077 -14.98728 -14.68174 -14.24016 -13.79455 -13.65863 -13.42202 -13.07136 -12.81722 -12.60441 -12.49389 -12.36463 -12.25373 -12.01955 -11.79414 -11.71290 -11.21077 -11.07194 -11.06603 -10.47701 -10.43636 -8.91410 -8.08244 -6.12327 1.41367 1.43039 1.55205 2.48192 2.98774 3.07949 3.28887 3.83396 3.93811 3.94955 4.03225 4.19988 4.20148 4.38929 4.51483 4.54936 4.56776 4.73447 4.73926 4.86774 4.95149 4.98614 5.08723 5.13496 5.19366 5.25535 5.29671 5.45023 5.50329 5.69995 5.89966 5.91478 6.30169 6.40544 6.50662 7.00892 7.53079 9.04051 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.010130 C = 0.008620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.716885 B = 2763.528239 C = 3247.421211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.067 0.933 4 C 0.038 3.962 5 C -0.490 4.490 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.516 5.516 14 C 0.026 3.974 15 C 0.074 3.926 16 H 0.139 0.861 17 C -0.130 4.130 18 C -0.135 4.135 19 C 0.075 3.925 20 H 0.127 0.873 21 C 0.035 3.965 22 O -0.386 6.386 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.058 0.942 26 H -0.012 1.012 27 H -0.003 1.003 28 H 0.257 0.743 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 1.904 -13.438 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 H 0.085 0.915 4 C 0.000 4.000 5 C -0.529 4.529 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.583 5.583 9 Si 0.779 3.221 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.240 5.240 14 C -0.102 4.102 15 C 0.016 3.984 16 H 0.156 0.844 17 C -0.167 4.167 18 C -0.173 4.173 19 C 0.017 3.983 20 H 0.144 0.856 21 C -0.094 4.094 22 O -0.305 6.305 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.007 0.993 27 H 0.016 0.984 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.144 1.703 -13.407 13.684 hybrid contribution 0.091 -0.009 0.932 0.936 sum -2.053 1.694 -12.476 12.757 Atomic orbital electron populations 1.22378 0.97620 1.01482 1.01794 1.21637 0.91791 0.97286 0.90752 0.91506 1.19021 0.95388 0.94372 0.91177 1.21440 0.92825 1.28009 1.10610 0.92403 1.25805 1.02606 0.95721 0.95806 1.70102 1.36857 1.33991 1.17346 0.85570 0.81011 0.77665 0.77809 1.18738 1.21132 1.21065 1.62162 1.57939 1.02260 1.01682 1.22895 0.99439 0.97296 0.90605 1.23618 0.89803 0.87109 0.97827 0.84352 1.22743 0.96826 0.96694 1.00465 1.22755 0.95166 0.98007 1.01389 1.23508 0.94462 0.95432 0.84876 0.85588 1.22725 0.96454 0.91954 0.98239 1.89178 1.61258 1.30657 1.49397 0.91973 0.93199 0.92323 0.99342 0.98449 0.93397 0.89533 0.94409 0.89990 0.91167 0.90476 0.91981 0.94400 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.97 8.42 71.98 0.61 -5.36 16 2 C 0.09 3.78 2.26 44.91 0.10 3.88 16 3 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 4 C 0.04 1.94 4.38 29.84 0.13 2.07 16 5 C -0.49 -27.28 8.81 25.60 0.23 -27.05 16 6 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -57.28 13.29 21.45 0.28 -57.00 16 9 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.52 -19.06 3.36 -867.32 -2.92 -21.97 16 14 C 0.03 0.77 4.89 86.50 0.42 1.19 16 15 C 0.07 1.95 4.73 31.41 0.15 2.10 16 16 H 0.14 2.79 8.14 -2.38 -0.02 2.77 16 17 C -0.13 -3.56 6.24 31.71 0.20 -3.36 16 18 C -0.14 -4.14 6.23 31.71 0.20 -3.94 16 19 C 0.07 2.29 4.73 31.43 0.15 2.44 16 20 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 21 C 0.03 1.24 4.26 86.52 0.37 1.61 16 22 O -0.39 -11.66 11.26 -148.98 -1.68 -13.34 16 23 H 0.06 1.85 6.74 -2.39 -0.02 1.84 16 24 H 0.05 1.74 6.28 -2.39 -0.01 1.73 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.00 -0.16 6.48 -2.38 -0.02 -0.17 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.04 1.11 6.66 -2.39 -0.02 1.09 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.17 7.82 -2.39 -0.02 2.15 16 33 H 0.08 2.01 8.14 -2.38 -0.02 2.00 16 34 H 0.06 2.33 7.82 -2.38 -0.02 2.31 16 35 H 0.04 1.33 6.11 -2.39 -0.01 1.31 16 36 H 0.06 2.64 6.55 -2.39 -0.02 2.63 16 Total: -1.00 -63.09 274.74 1.77 -61.32 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.04 Total: 10.18 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.01 Total: -26.15 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.63 Total: -78.97 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.68 Total: -13.34 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.09 1.77 -61.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.533 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds