Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46847 * 111.00044 * 2 1 4 4 C 1.53095 * 109.48636 * 173.86373 * 3 2 1 5 5 C 1.52897 * 109.29320 * 58.71023 * 4 3 2 6 6 C 1.54161 * 109.49438 * 182.72173 * 5 4 3 7 7 C 1.55364 * 102.19058 * 219.05486 * 6 5 4 8 8 C 1.54975 * 100.96331 * 33.95285 * 7 6 5 9 9 H 1.08994 * 110.30985 * 82.58294 * 8 7 6 10 10 C 1.50700 * 110.38937 * 204.70926 * 8 7 6 11 11 H 1.08003 * 120.00155 * 357.21260 * 10 8 7 12 12 C 1.37875 * 120.00167 * 177.22053 * 10 8 7 13 13 N 1.31513 * 120.00272 * 180.02562 * 12 10 8 14 14 Si 1.86802 * 119.99652 * 359.97438 * 12 10 8 15 15 H 1.48493 * 109.47313 * 90.00544 * 14 12 10 16 16 H 1.48499 * 109.46827 * 210.00377 * 14 12 10 17 17 H 1.48505 * 109.47148 * 329.99969 * 14 12 10 18 18 O 1.43015 * 110.05788 * 64.35455 * 5 4 3 19 19 C 1.52888 * 109.83812 * 303.04974 * 5 4 3 20 20 C 1.46845 * 111.00040 * 235.68749 * 2 1 3 21 21 H 1.08996 * 109.47078 * 60.00169 * 1 2 3 22 22 H 1.09008 * 109.46931 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47079 * 300.00013 * 1 2 3 24 24 H 1.08995 * 109.46975 * 53.86470 * 3 2 1 25 25 H 1.09000 * 109.47013 * 293.86814 * 3 2 1 26 26 H 1.09002 * 109.50646 * 178.66904 * 4 3 2 27 27 H 1.09003 * 109.50955 * 298.75457 * 4 3 2 28 28 H 1.09004 * 110.86483 * 337.22657 * 6 5 4 29 29 H 1.08996 * 110.86338 * 100.88435 * 6 5 4 30 30 H 1.08994 * 111.12256 * 276.02707 * 7 6 5 31 31 H 1.09000 * 111.15519 * 151.88805 * 7 6 5 32 32 H 0.96994 * 120.00086 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47481 * 296.99959 * 19 5 4 34 34 H 1.09008 * 109.53791 * 176.91699 * 19 5 4 35 35 H 1.09002 * 109.46594 * 306.13506 * 20 2 1 36 36 H 1.08996 * 109.46223 * 66.11998 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5179 1.3334 0.1543 5 6 4.1223 0.5251 -0.9942 6 6 5.6492 0.4266 -0.8063 7 6 6.1693 0.5750 -2.2627 8 6 5.1224 1.5545 -2.8512 9 1 5.3788 2.5820 -2.5934 10 6 5.0387 1.3967 -4.3475 11 1 5.6951 0.7055 -4.8552 12 6 4.1242 2.1349 -5.0685 13 7 4.0508 1.9969 -6.3743 14 14 2.9886 3.3301 -4.1903 15 1 3.6353 4.6648 -4.1175 16 1 1.7107 3.4395 -4.9388 17 1 2.7167 2.8360 -2.8165 18 8 3.8759 1.1830 -2.2399 19 6 3.5179 -0.8791 -1.0147 20 6 1.9952 -0.7728 -1.1323 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.5597 1.9273 0.8299 25 1 1.7372 1.8591 -0.9398 26 1 3.9113 2.3497 0.1306 27 1 3.7762 0.8653 1.1042 28 1 6.0163 1.2386 -0.1785 29 1 5.9276 -0.5423 -0.3917 30 1 6.1505 -0.3810 -2.7859 31 1 7.1684 1.0105 -2.2812 32 1 3.4078 2.5165 -6.8815 33 1 3.7763 -1.3994 -0.0925 34 1 3.9110 -1.4328 -1.8674 35 1 1.5596 -1.7720 -1.1240 36 1 1.7370 -0.2718 -2.0652 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606268320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = -46.127454 kcal Electronic energy + Delta-G solvation = -16895.497251 eV Core-core repulsion = 14379.239286 eV Total energy + Delta-G solvation = -2516.257965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62639 -36.98691 -32.97039 -31.80470 -31.03041 -30.50824 -27.82708 -25.38502 -23.08273 -22.89208 -20.93641 -20.30409 -18.67983 -16.76946 -15.83156 -15.30299 -14.86172 -14.70303 -14.27397 -13.79067 -13.49946 -12.86806 -12.60116 -12.51947 -12.25741 -12.05549 -11.69575 -11.46188 -11.17340 -11.00150 -10.86814 -10.70564 -10.68160 -10.09350 -9.82873 -9.68134 -9.51369 -9.30051 -8.53320 -8.13696 -8.03305 -6.08708 -4.16119 3.38273 3.43865 3.68768 4.22096 4.54508 4.76520 5.13787 5.19407 5.31064 5.39222 5.45456 5.56342 5.67172 5.68512 5.82200 5.85597 5.92593 5.94798 5.99489 6.13963 6.19427 6.33141 6.35747 6.42120 6.45663 6.53142 6.60973 6.73997 6.81219 7.26118 7.35585 7.37328 7.65691 8.40153 8.46301 8.93619 9.56342 11.02069 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.011993 C = 0.009801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.574246 B = 2334.211550 C = 2856.162329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.058 3.942 4 C -0.114 4.114 5 C 0.099 3.901 6 C -0.147 4.147 7 C -0.135 4.135 8 C 0.172 3.828 9 H 0.024 0.976 10 C -0.521 4.521 11 H 0.077 0.923 12 C 0.084 3.916 13 N -0.895 5.895 14 Si 0.867 3.133 15 H -0.286 1.286 16 H -0.294 1.294 17 H -0.220 1.220 18 O -0.365 6.365 19 C -0.109 4.109 20 C 0.059 3.941 21 H 0.023 0.977 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -3.060 13.540 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.070 4.070 4 C -0.152 4.152 5 C 0.058 3.942 6 C -0.185 4.185 7 C -0.172 4.172 8 C 0.117 3.883 9 H 0.042 0.958 10 C -0.558 4.558 11 H 0.095 0.905 12 C -0.120 4.120 13 N -0.532 5.532 14 Si 0.694 3.306 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.143 1.143 18 O -0.286 6.286 19 C -0.147 4.147 20 C -0.069 4.069 21 H 0.042 0.958 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.134 -3.198 13.729 14.441 hybrid contribution -0.720 1.012 -0.467 1.327 sum -3.855 -2.187 13.262 13.983 Atomic orbital electron populations 1.22304 0.88151 1.01516 1.00277 1.61994 1.06908 1.14144 1.43941 1.22030 0.95565 0.88894 1.00513 1.21868 0.94752 1.00312 0.98264 1.21725 0.93206 0.92002 0.87218 1.23129 0.95573 1.01341 0.98415 1.23128 0.99409 1.01207 0.93498 1.20936 0.80734 0.92886 0.93722 0.95830 1.21050 1.21176 1.25424 0.88170 0.90537 1.25023 0.96147 0.96360 0.94489 1.69928 1.35987 1.41056 1.06274 0.87039 0.79987 0.80466 0.83124 1.21243 1.22048 1.14332 1.88853 1.32253 1.76081 1.31385 1.21790 0.94539 0.96766 1.01618 1.22007 0.95655 0.97154 0.92053 0.95818 0.91763 0.91884 0.91821 0.93718 0.91688 0.91359 0.91671 0.91438 0.91143 0.91792 0.92654 0.91638 0.90980 0.91667 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.06 0.58 0.92 16 2 N -0.54 -8.52 4.90 -242.90 -1.19 -9.71 16 3 C 0.06 0.95 5.36 -3.80 -0.02 0.92 16 4 C -0.11 -1.86 4.95 -26.74 -0.13 -1.99 16 5 C 0.10 1.81 0.79 -90.12 -0.07 1.74 16 6 C -0.15 -2.44 6.07 -24.87 -0.15 -2.59 16 7 C -0.13 -2.65 6.54 -24.43 -0.16 -2.81 16 8 C 0.17 4.12 2.69 -26.84 -0.07 4.05 16 9 H 0.02 0.58 7.63 -51.93 -0.40 0.18 16 10 C -0.52 -14.89 9.39 -34.44 -0.32 -15.22 16 11 H 0.08 2.34 8.02 -52.48 -0.42 1.92 16 12 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 13 N -0.89 -27.78 13.96 55.43 0.77 -27.01 16 14 Si 0.87 22.16 27.07 -169.99 -4.60 17.55 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 17 H -0.22 -5.44 5.12 56.52 0.29 -5.15 16 18 O -0.37 -8.40 6.49 -35.23 -0.23 -8.63 16 19 C -0.11 -1.84 4.94 -26.74 -0.13 -1.97 16 20 C 0.06 0.99 5.36 -3.81 -0.02 0.97 16 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 25 H 0.04 0.86 7.60 -51.93 -0.39 0.46 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.00 7.83 -51.93 -0.41 0.59 16 29 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 30 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 34 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 35 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 LS Contribution 277.22 15.07 4.18 4.18 Total: -1.00 -30.85 277.22 -7.99 -38.83 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.32 Total: -1.60 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.60 Total: -13.62 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.42 Total: -36.72 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.23 Total: -8.63 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.60 Total: 17.55 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.85 -7.99 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.294 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds