Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46847 * 111.00044 * 2 1 4 4 C 1.53095 * 109.48636 * 173.86373 * 3 2 1 5 5 C 1.52897 * 109.29320 * 58.71023 * 4 3 2 6 6 C 1.54161 * 109.49438 * 182.72173 * 5 4 3 7 7 C 1.55364 * 102.19058 * 219.05486 * 6 5 4 8 8 C 1.54975 * 100.96331 * 33.95285 * 7 6 5 9 9 H 1.08994 * 110.30985 * 82.58294 * 8 7 6 10 10 C 1.50700 * 110.38937 * 204.70926 * 8 7 6 11 11 H 1.08003 * 120.00155 * 357.21260 * 10 8 7 12 12 C 1.37875 * 120.00167 * 177.22053 * 10 8 7 13 13 N 1.31513 * 120.00272 * 180.02562 * 12 10 8 14 14 Si 1.86802 * 119.99652 * 359.97438 * 12 10 8 15 15 H 1.48493 * 109.47313 * 90.00544 * 14 12 10 16 16 H 1.48499 * 109.46827 * 210.00377 * 14 12 10 17 17 H 1.48505 * 109.47148 * 329.99969 * 14 12 10 18 18 O 1.43015 * 110.05788 * 64.35455 * 5 4 3 19 19 C 1.52888 * 109.83812 * 303.04974 * 5 4 3 20 20 C 1.46845 * 111.00040 * 235.68749 * 2 1 3 21 21 H 1.08996 * 109.47078 * 60.00169 * 1 2 3 22 22 H 1.09008 * 109.46931 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47079 * 300.00013 * 1 2 3 24 24 H 1.08995 * 109.46975 * 53.86470 * 3 2 1 25 25 H 1.09000 * 109.47013 * 293.86814 * 3 2 1 26 26 H 1.09002 * 109.50646 * 178.66904 * 4 3 2 27 27 H 1.09003 * 109.50955 * 298.75457 * 4 3 2 28 28 H 1.09004 * 110.86483 * 337.22657 * 6 5 4 29 29 H 1.08996 * 110.86338 * 100.88435 * 6 5 4 30 30 H 1.08994 * 111.12256 * 276.02707 * 7 6 5 31 31 H 1.09000 * 111.15519 * 151.88805 * 7 6 5 32 32 H 0.96994 * 120.00086 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47481 * 296.99959 * 19 5 4 34 34 H 1.09008 * 109.53791 * 176.91699 * 19 5 4 35 35 H 1.09002 * 109.46594 * 306.13506 * 20 2 1 36 36 H 1.08996 * 109.46223 * 66.11998 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5179 1.3334 0.1543 5 6 4.1223 0.5251 -0.9942 6 6 5.6492 0.4266 -0.8063 7 6 6.1693 0.5750 -2.2627 8 6 5.1224 1.5545 -2.8512 9 1 5.3788 2.5820 -2.5934 10 6 5.0387 1.3967 -4.3475 11 1 5.6951 0.7055 -4.8552 12 6 4.1242 2.1349 -5.0685 13 7 4.0508 1.9969 -6.3743 14 14 2.9886 3.3301 -4.1903 15 1 3.6353 4.6648 -4.1175 16 1 1.7107 3.4395 -4.9388 17 1 2.7167 2.8360 -2.8165 18 8 3.8759 1.1830 -2.2399 19 6 3.5179 -0.8791 -1.0147 20 6 1.9952 -0.7728 -1.1323 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.5597 1.9273 0.8299 25 1 1.7372 1.8591 -0.9398 26 1 3.9113 2.3497 0.1306 27 1 3.7762 0.8653 1.1042 28 1 6.0163 1.2386 -0.1785 29 1 5.9276 -0.5423 -0.3917 30 1 6.1505 -0.3810 -2.7859 31 1 7.1684 1.0105 -2.2812 32 1 3.4078 2.5165 -6.8815 33 1 3.7763 -1.3994 -0.0925 34 1 3.9110 -1.4328 -1.8674 35 1 1.5596 -1.7720 -1.1240 36 1 1.7370 -0.2718 -2.0652 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = -67.361915 kcal Electronic energy + Delta-G solvation = -16896.418046 eV Core-core repulsion = 14379.239286 eV Total energy + Delta-G solvation = -2517.178760 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.09021 -38.39719 -34.93184 -33.49587 -32.61643 -31.80083 -29.52305 -26.89536 -24.56564 -24.21960 -22.45550 -21.93442 -20.12433 -18.93257 -17.32539 -16.85671 -16.48588 -16.01017 -15.75951 -15.18148 -15.09602 -14.72183 -14.17099 -14.02850 -13.86944 -13.32257 -12.98266 -12.88195 -12.72596 -12.59205 -12.53112 -12.18028 -11.99354 -11.95228 -11.63291 -11.18636 -11.16978 -11.03692 -10.71944 -9.87499 -9.30888 -8.36607 -6.47504 1.31932 1.34376 1.64420 2.39598 2.89572 3.03952 3.45967 3.82667 3.87060 4.05807 4.16674 4.25783 4.35273 4.43279 4.49338 4.58461 4.64884 4.66842 4.74005 4.85262 4.94464 4.97420 4.98168 5.01361 5.12560 5.15668 5.21799 5.29506 5.42849 5.53485 5.59129 6.10675 6.15436 6.20593 6.53548 6.82547 7.29566 8.77817 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.011993 C = 0.009801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.574246 B = 2334.211550 C = 2856.162329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.110 4.110 5 C 0.082 3.918 6 C -0.132 4.132 7 C -0.133 4.133 8 C 0.171 3.829 9 H 0.024 0.976 10 C -0.528 4.528 11 H 0.039 0.961 12 C 0.027 3.973 13 N -0.943 5.943 14 Si 0.932 3.068 15 H -0.276 1.276 16 H -0.299 1.299 17 H -0.208 1.208 18 O -0.388 6.388 19 C -0.107 4.107 20 C 0.061 3.939 21 H 0.009 0.991 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.008 0.992 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.265 0.735 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -3.140 17.072 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.148 4.148 5 C 0.043 3.957 6 C -0.169 4.169 7 C -0.171 4.171 8 C 0.115 3.885 9 H 0.041 0.959 10 C -0.565 4.565 11 H 0.057 0.943 12 C -0.172 4.172 13 N -0.583 5.583 14 Si 0.756 3.244 15 H -0.202 1.202 16 H -0.226 1.226 17 H -0.131 1.131 18 O -0.309 6.309 19 C -0.145 4.145 20 C -0.068 4.068 21 H 0.028 0.972 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.027 0.973 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -3.468 -3.287 17.284 17.932 hybrid contribution -0.596 0.944 -1.569 1.926 sum -4.065 -2.342 15.715 16.400 Atomic orbital electron populations 1.22424 0.86649 1.02761 1.00622 1.62070 1.08299 1.13480 1.42576 1.22065 0.96129 0.89284 0.99668 1.21861 0.94361 1.00245 0.98298 1.22132 0.94968 0.92703 0.85940 1.23109 0.93754 1.03798 0.96274 1.23047 0.99109 0.99391 0.95521 1.20753 0.82652 0.94064 0.91021 0.95860 1.21392 1.19921 1.23943 0.91289 0.94314 1.25889 0.97916 0.98376 0.95044 1.70062 1.37455 1.42847 1.07922 0.86036 0.77579 0.78417 0.82329 1.20235 1.22579 1.13066 1.88748 1.31512 1.76818 1.33858 1.21786 0.94368 0.96046 1.02285 1.21975 0.96059 0.97931 0.90787 0.97199 0.90169 0.89761 0.89260 0.97328 0.91627 0.88544 0.89541 0.88643 0.92599 0.90286 0.92594 0.88719 0.92701 0.89718 0.97640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.59 127.69 1.22 1.78 16 2 N -0.54 -15.30 4.90 -922.39 -4.52 -19.82 16 3 C 0.06 1.69 5.36 86.34 0.46 2.15 16 4 C -0.11 -3.17 4.95 30.59 0.15 -3.02 16 5 C 0.08 2.80 0.79 -10.47 -0.01 2.79 16 6 C -0.13 -3.91 6.07 31.80 0.19 -3.71 16 7 C -0.13 -5.07 6.54 32.08 0.21 -4.86 16 8 C 0.17 8.14 2.69 30.52 0.08 8.22 16 9 H 0.02 1.12 7.63 -2.39 -0.02 1.11 16 10 C -0.53 -31.20 9.39 25.60 0.24 -30.96 16 11 H 0.04 2.50 8.02 -2.91 -0.02 2.48 16 12 C 0.03 1.62 5.47 84.65 0.46 2.08 16 13 N -0.94 -60.86 13.96 21.45 0.30 -60.56 16 14 Si 0.93 47.00 27.07 68.60 1.86 48.86 16 15 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 17 H -0.21 -10.03 5.12 99.48 0.51 -9.52 16 18 O -0.39 -17.60 6.49 -148.98 -0.97 -18.56 16 19 C -0.11 -3.36 4.94 30.59 0.15 -3.20 16 20 C 0.06 1.93 5.36 86.34 0.46 2.39 16 21 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 22 H 0.08 1.63 8.09 -2.38 -0.02 1.61 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 25 H 0.01 0.31 7.60 -2.39 -0.02 0.30 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 2.23 7.83 -2.39 -0.02 2.21 16 29 H 0.10 2.33 7.79 -2.39 -0.02 2.31 16 30 H 0.06 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.08 2.73 8.14 -2.39 -0.02 2.72 16 32 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 33 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 34 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 36 H 0.01 0.21 7.85 -2.39 -0.02 0.19 16 Total: -1.00 -68.99 277.22 1.12 -67.87 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.82 Total: 8.57 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.63 Total: -26.35 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -4.22 Total: -80.39 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.97 Total: -18.56 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.86 Total: 48.86 kcal Total: -68.99 1.12 -67.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.508 kcal (2) G-P(sol) polarization free energy of solvation -68.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds