Wall clock time and date at job start Mon Mar 30 2020 03:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47226 * 2 1 4 4 C 1.50702 * 109.46780 * 120.00201 * 2 1 3 5 5 H 1.07999 * 120.00066 * 87.57931 * 4 2 1 6 6 C 1.37879 * 120.00137 * 267.57494 * 4 2 1 7 7 N 1.31502 * 120.00223 * 174.22606 * 6 4 2 8 8 Si 1.86801 * 119.99583 * 354.22463 * 6 4 2 9 9 H 1.48500 * 109.47395 * 275.53279 * 8 6 4 10 10 H 1.48503 * 109.47382 * 35.53439 * 8 6 4 11 11 H 1.48504 * 109.46793 * 155.53477 * 8 6 4 12 12 N 1.46904 * 109.46706 * 239.99806 * 2 1 3 13 13 C 1.47173 * 110.99838 * 281.76973 * 12 2 1 14 14 C 1.53074 * 109.21748 * 180.02562 * 13 12 2 15 15 O 1.42976 * 109.53423 * 58.68115 * 14 13 12 16 16 C 1.43174 * 113.68467 * 299.61452 * 15 14 13 17 17 C 1.46678 * 110.99804 * 158.48835 * 12 2 1 18 18 C 1.53388 * 113.55810 * 47.31048 * 17 12 2 19 19 C 1.53841 * 86.96563 * 220.06432 * 18 17 12 20 20 C 1.53364 * 113.61072 * 309.36085 * 17 12 2 21 21 H 1.08998 * 109.46948 * 55.65789 * 1 2 3 22 22 H 1.08996 * 109.47626 * 175.66817 * 1 2 3 23 23 H 1.09009 * 109.46704 * 295.66924 * 1 2 3 24 24 H 0.97003 * 120.00253 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.51710 * 299.95695 * 13 12 2 26 26 H 1.08998 * 109.50861 * 60.06911 * 13 12 2 27 27 H 1.09005 * 109.46223 * 178.70611 * 14 13 12 28 28 H 1.09003 * 109.45982 * 298.66236 * 14 13 12 29 29 H 1.09003 * 109.55093 * 176.22861 * 16 15 14 30 30 H 1.08997 * 109.55758 * 296.43090 * 16 15 14 31 31 H 1.08993 * 113.63300 * 334.58887 * 18 17 12 32 32 H 1.09004 * 113.62510 * 105.54674 * 18 17 12 33 33 H 1.08996 * 113.61081 * 270.57008 * 19 18 17 34 34 H 1.08999 * 113.60417 * 139.70179 * 19 18 17 35 35 H 1.09005 * 113.62947 * 254.40536 * 20 17 12 36 36 H 1.09001 * 113.63329 * 25.27191 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.1750 -1.7809 1.2155 6 6 2.3097 0.0061 2.3753 7 7 2.6385 -0.6239 3.4818 8 14 2.2185 1.8717 2.3545 9 1 3.5028 2.4246 1.8545 10 1 1.1129 2.3034 1.4619 11 1 1.9672 2.3704 3.7306 12 7 2.0196 -0.6926 -1.1995 13 6 1.9311 -2.1528 -1.0384 14 6 2.4508 -2.8321 -2.3079 15 8 3.8028 -2.4322 -2.5449 16 6 3.9612 -1.0214 -2.7307 17 6 3.3959 -0.2932 -1.5120 18 6 4.3315 -0.3148 -0.2967 19 6 4.9432 0.9850 -0.8473 20 6 3.5995 1.2262 -1.5568 21 1 -0.3633 0.5797 -0.8485 22 1 -0.3634 -1.0247 -0.0776 23 1 -0.3633 0.4452 0.9263 24 1 2.8333 -0.1198 4.2874 25 1 2.5358 -2.4624 -0.1860 26 1 0.8926 -2.4382 -0.8710 27 1 2.4085 -3.9143 -2.1840 28 1 1.8315 -2.5395 -3.1558 29 1 5.0196 -0.7843 -2.8387 30 1 3.4240 -0.7088 -3.6260 31 1 3.8152 -0.1861 0.6545 32 1 5.0241 -1.1565 -0.2934 33 1 5.7749 0.8201 -1.5322 34 1 5.1683 1.7221 -0.0766 35 1 3.7036 1.6235 -2.5665 36 1 2.8797 1.7814 -0.9554 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:19 Heat of formation + Delta-G solvation = -21.997684 kcal Electronic energy + Delta-G solvation = -17375.123689 eV Core-core repulsion = 14859.912069 eV Total energy + Delta-G solvation = -2515.211619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.78033 -38.11900 -36.81988 -34.34132 -31.84367 -30.16202 -27.67634 -27.13032 -26.29149 -24.69237 -22.38826 -21.69488 -19.35914 -18.57200 -17.77817 -17.00686 -16.46780 -16.28409 -16.03273 -15.24758 -14.94395 -14.53994 -14.45523 -14.16072 -13.65497 -13.34722 -13.18304 -12.80660 -12.67386 -12.54498 -12.18317 -12.11203 -11.74318 -11.72479 -11.54718 -11.33225 -11.00254 -10.86128 -10.58179 -10.30359 -8.84698 -8.29440 -6.24669 1.28785 1.32144 1.39408 2.30285 2.95578 3.02524 3.23360 3.81484 3.86244 3.91393 4.14292 4.22666 4.35006 4.45770 4.58937 4.61728 4.71262 4.74304 4.84387 4.90671 4.98121 5.00330 5.04425 5.10225 5.23177 5.26265 5.32571 5.41118 5.54540 5.58946 5.85245 6.22982 6.25541 6.39374 6.55000 6.75929 7.33066 8.85606 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.013233 C = 0.011600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.192576 B = 2115.463533 C = 2413.244901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.163 3.837 3 H 0.049 0.951 4 C -0.515 4.515 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.943 5.943 8 Si 0.911 3.089 9 H -0.261 1.261 10 H -0.243 1.243 11 H -0.293 1.293 12 N -0.510 5.510 13 C 0.025 3.975 14 C 0.068 3.932 15 O -0.402 6.402 16 C 0.094 3.906 17 C 0.054 3.946 18 C -0.198 4.198 19 C -0.137 4.137 20 C -0.123 4.123 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.036 0.964 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 2.756 -12.531 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.055 3.945 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.583 5.583 8 Si 0.736 3.264 9 H -0.186 1.186 10 H -0.167 1.167 11 H -0.219 1.219 12 N -0.233 5.233 13 C -0.103 4.103 14 C -0.009 4.009 15 O -0.321 6.321 16 C 0.017 3.983 17 C -0.036 4.036 18 C -0.236 4.236 19 C -0.174 4.174 20 C -0.160 4.160 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.655 2.778 -12.779 13.094 hybrid contribution 0.320 0.464 1.780 1.867 sum 0.976 3.242 -10.999 11.508 Atomic orbital electron populations 1.21776 0.96546 1.00532 0.99339 1.19850 0.93145 0.94844 0.86661 0.93316 1.21714 1.41809 0.95349 0.96507 0.93369 1.25667 0.94700 1.02045 0.94935 1.70046 1.49090 1.37506 1.01686 0.86297 0.80440 0.82177 0.77535 1.18620 1.16658 1.21940 1.62638 1.19150 1.05390 1.36091 1.22634 1.00894 0.89369 0.97425 1.22745 0.82566 0.99596 0.95996 1.87923 1.28156 1.23648 1.92341 1.22476 1.01562 0.79661 0.94596 1.22828 0.88536 0.96413 0.95872 1.24190 0.99511 0.97026 1.02915 1.22833 0.97292 0.97414 0.99890 1.22980 0.96907 0.94495 1.01633 0.92886 0.93713 0.94490 0.92777 0.95719 0.90702 0.87571 0.91355 0.87412 0.90949 0.87021 0.94680 0.88237 0.92931 0.88644 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.35 71.98 0.67 -4.36 16 2 C 0.16 7.22 1.45 44.17 0.06 7.28 16 3 H 0.05 2.18 2.51 -2.39 -0.01 2.18 16 4 C -0.51 -27.36 5.46 25.60 0.14 -27.22 16 5 H 0.05 2.89 5.65 -2.91 -0.02 2.88 16 6 C 0.02 1.37 4.69 84.66 0.40 1.77 16 7 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 8 Si 0.91 42.44 26.54 68.60 1.82 44.26 16 9 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.24 -10.48 6.85 99.48 0.68 -9.80 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 12 N -0.51 -20.15 4.62 -824.71 -3.81 -23.96 16 13 C 0.03 0.98 4.73 86.28 0.41 1.39 16 14 C 0.07 2.12 6.94 72.01 0.50 2.62 16 15 O -0.40 -13.71 10.84 -148.98 -1.61 -15.32 16 16 C 0.09 2.85 6.05 71.92 0.44 3.29 16 17 C 0.05 1.97 1.01 3.76 0.00 1.98 16 18 C -0.20 -8.30 6.33 31.01 0.20 -8.11 16 19 C -0.14 -4.55 7.73 31.16 0.24 -4.31 16 20 C -0.12 -3.99 7.08 31.00 0.22 -3.77 16 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.04 1.77 6.94 -2.39 -0.02 1.76 16 23 H 0.04 1.54 8.03 -2.38 -0.02 1.52 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.02 1.17 5.56 -2.39 -0.01 1.16 16 26 H 0.07 2.84 6.96 -2.39 -0.02 2.82 16 27 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.11 2.85 7.33 -2.39 -0.02 2.84 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.11 5.64 3.33 -2.39 -0.01 5.63 16 32 H 0.03 1.51 8.09 -2.38 -0.02 1.49 16 33 H 0.10 2.68 7.63 -2.39 -0.02 2.66 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 2.44 8.09 -2.38 -0.02 2.42 16 36 H 0.07 2.53 5.67 -2.39 -0.01 2.51 16 Total: -1.00 -61.79 262.67 1.01 -60.77 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 1.04 Total: 20.68 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.28 Total: -29.44 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.51 Total: -80.94 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -1.61 Total: -15.32 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.82 Total: 44.26 kcal Total: -61.79 1.01 -60.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.774 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds