Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46775 * 2 1 4 4 C 1.50702 * 109.47041 * 239.99995 * 2 1 3 5 5 H 1.07997 * 119.99884 * 245.21337 * 4 2 1 6 6 C 1.37883 * 119.99919 * 65.21262 * 4 2 1 7 7 N 1.31514 * 119.99716 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99683 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47138 * 60.00655 * 8 6 4 10 10 H 1.48504 * 109.46728 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47591 * 299.99900 * 8 6 4 12 12 N 1.46893 * 109.46973 * 120.00241 * 2 1 3 13 13 C 1.47178 * 111.00397 * 77.63887 * 12 2 1 14 14 C 1.53065 * 109.22594 * 179.97438 * 13 12 2 15 15 O 1.42991 * 109.53060 * 301.31860 * 14 13 12 16 16 C 1.43181 * 113.68031 * 60.38789 * 15 14 13 17 17 C 1.46671 * 110.99931 * 200.92358 * 12 2 1 18 18 C 1.53384 * 113.55747 * 312.67925 * 17 12 2 19 19 C 1.53852 * 86.96431 * 139.93396 * 18 17 12 20 20 C 1.53364 * 113.61320 * 50.63933 * 17 12 2 21 21 H 1.09000 * 109.46982 * 64.73684 * 1 2 3 22 22 H 1.09005 * 109.46835 * 184.73381 * 1 2 3 23 23 H 1.08997 * 109.47349 * 304.73423 * 1 2 3 24 24 H 0.97003 * 119.99090 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.51002 * 299.88319 * 13 12 2 26 26 H 1.08997 * 109.51414 * 60.03508 * 13 12 2 27 27 H 1.08992 * 109.46493 * 181.29510 * 14 13 12 28 28 H 1.09005 * 109.46307 * 61.33404 * 14 13 12 29 29 H 1.08998 * 109.54644 * 63.46329 * 16 15 14 30 30 H 1.08997 * 109.55145 * 183.66164 * 16 15 14 31 31 H 1.08997 * 113.64047 * 254.45775 * 18 17 12 32 32 H 1.09009 * 113.63139 * 25.41957 * 18 17 12 33 33 H 1.08999 * 113.60779 * 220.30331 * 19 18 17 34 34 H 1.09006 * 113.59729 * 89.43658 * 19 18 17 35 35 H 1.08996 * 113.63092 * 334.63839 * 20 17 12 36 36 H 1.08998 * 113.63212 * 105.51556 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5820 -1.6350 -1.1336 6 6 1.7902 -0.1800 -2.4799 7 7 1.1203 0.9456 -2.5978 8 14 2.4134 -1.0602 -4.0050 9 1 1.8177 -2.4189 -4.0706 10 1 2.0243 -0.2910 -5.2142 11 1 3.8929 -1.1708 -3.9430 12 7 2.0197 -0.6925 1.1994 13 6 1.9182 -2.1525 1.0439 14 6 2.4383 -2.8319 2.3130 15 8 3.7950 -2.4426 2.5420 16 6 3.9659 -1.0325 2.7222 17 6 3.4007 -0.3037 1.5039 18 6 4.3302 -0.3374 0.2842 19 6 4.9554 0.9592 0.8272 20 6 3.6173 1.2141 1.5424 21 1 -0.3633 0.4386 -0.9294 22 1 -0.3633 -1.0242 0.0848 23 1 -0.3634 0.5855 0.8445 24 1 0.9503 1.3189 -3.4769 25 1 0.8764 -2.4300 0.8835 26 1 2.5160 -2.4701 0.1896 27 1 2.3863 -3.9140 2.1931 28 1 1.8258 -2.5312 3.1631 29 1 3.4342 -0.7122 3.6182 30 1 5.0266 -0.8040 2.8262 31 1 5.0156 -1.1849 0.2803 32 1 3.8103 -0.2076 -0.6651 33 1 5.1829 1.6918 0.0528 34 1 5.7891 0.7895 1.5087 35 1 2.9002 1.7732 0.9414 36 1 3.7282 1.6142 2.5503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606268803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = -4.754498 kcal Electronic energy + Delta-G solvation = -17232.815947 eV Core-core repulsion = 14718.352048 eV Total energy + Delta-G solvation = -2514.463899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15974 -36.62675 -35.04288 -32.37058 -29.53572 -28.54265 -25.90371 -25.49361 -24.50911 -23.12808 -20.80271 -20.11640 -17.43355 -16.39890 -16.16991 -15.35013 -14.98390 -14.62679 -14.49559 -13.45366 -13.18966 -13.08721 -12.61280 -12.12203 -11.66449 -11.59220 -11.33662 -11.03428 -10.85263 -10.68650 -10.55031 -10.31477 -10.18595 -10.00429 -9.89649 -9.50685 -9.43704 -9.08254 -8.65496 -8.39359 -7.08248 -6.06422 -4.12492 3.25476 3.30813 3.34078 4.31593 4.35230 4.88757 5.18147 5.33154 5.40196 5.46345 5.59375 5.71706 5.79109 5.90129 6.03411 6.07064 6.12272 6.33261 6.50627 6.52054 6.68940 6.76643 6.84533 6.91583 6.98719 7.09338 7.22513 7.46732 7.50868 7.62975 7.71768 7.91990 8.13196 8.28765 8.44951 8.93340 9.48635 10.94974 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.011432 C = 0.010835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.971558 B = 2448.669776 C = 2583.671311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.199 3.801 3 H 0.052 0.948 4 C -0.539 4.539 5 H 0.067 0.933 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.521 5.521 13 C 0.025 3.975 14 C 0.060 3.940 15 O -0.390 6.390 16 C 0.092 3.908 17 C 0.060 3.940 18 C -0.182 4.182 19 C -0.145 4.145 20 C -0.125 4.125 21 H 0.075 0.925 22 H 0.024 0.976 23 H 0.014 0.986 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.146 0.854 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -2.176 7.032 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.093 3.907 3 H 0.069 0.931 4 C -0.577 4.577 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.245 5.245 13 C -0.103 4.103 14 C -0.017 4.017 15 O -0.308 6.308 16 C 0.015 3.985 17 C -0.032 4.032 18 C -0.220 4.220 19 C -0.183 4.183 20 C -0.162 4.162 21 H 0.093 0.907 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.163 0.837 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.237 -2.033 7.308 8.247 hybrid contribution 0.584 -0.502 -1.622 1.796 sum 3.821 -2.535 5.685 7.304 Atomic orbital electron populations 1.21686 0.97988 0.98362 1.00111 1.19438 0.91960 0.94966 0.84301 0.93053 1.21720 1.35192 1.09217 0.91616 0.91553 1.24927 0.94947 0.94849 0.98805 1.69905 1.39431 1.18828 1.23875 0.86778 0.79454 0.79895 0.82700 1.20248 1.21263 1.20172 1.62620 1.17325 1.05063 1.39467 1.22623 1.01318 0.89992 0.96390 1.22716 0.82771 0.98671 0.97502 1.87918 1.27251 1.22991 1.92654 1.22334 1.00011 0.80597 0.95587 1.22550 0.89914 0.95326 0.95376 1.24332 0.98686 0.95598 1.03383 1.22773 0.96167 0.99646 0.99697 1.23040 0.97727 0.95674 0.99805 0.90670 0.95684 0.96683 0.92766 0.90748 0.92437 0.89694 0.93457 0.93296 0.89440 0.93575 0.83671 0.92059 0.91856 0.88521 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 9.26 37.16 0.34 -2.57 16 2 C 0.20 4.75 1.76 -68.86 -0.12 4.63 16 3 H 0.05 1.33 5.25 -51.93 -0.27 1.06 16 4 C -0.54 -13.65 4.67 -34.44 -0.16 -13.81 16 5 H 0.07 1.71 4.86 -52.49 -0.25 1.45 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.04 11.70 55.43 0.65 -23.39 16 8 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.52 -11.01 4.63 -212.04 -0.98 -11.99 16 13 C 0.03 0.50 4.86 -3.64 -0.02 0.48 16 14 C 0.06 1.03 6.94 37.19 0.26 1.29 16 15 O -0.39 -7.14 10.84 -35.23 -0.38 -7.52 16 16 C 0.09 1.58 6.05 37.06 0.22 1.80 16 17 C 0.06 1.15 1.01 -131.44 -0.13 1.02 16 18 C -0.18 -3.70 6.09 -26.09 -0.16 -3.86 16 19 C -0.14 -2.53 7.73 -25.84 -0.20 -2.73 16 20 C -0.12 -2.28 7.08 -26.10 -0.18 -2.46 16 21 H 0.07 1.93 6.40 -51.93 -0.33 1.60 16 22 H 0.02 0.56 6.90 -51.93 -0.36 0.20 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.07 1.47 6.92 -51.93 -0.36 1.11 16 26 H 0.06 1.27 5.40 -51.93 -0.28 0.99 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.35 7.34 -51.93 -0.38 0.97 16 31 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.15 3.46 4.22 -51.92 -0.22 3.24 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.96 7.64 -51.93 -0.40 0.57 16 35 H 0.10 1.98 5.67 -51.93 -0.29 1.69 16 36 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -26.53 264.56 -7.23 -33.76 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.24 Total: 4.11 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.24 Total: -14.53 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.33 Total: -35.37 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.38 Total: -7.52 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.53 -7.23 -33.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.004 kcal (2) G-P(sol) polarization free energy of solvation -26.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds