Wall clock time and date at job start Mon Mar 30 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46775 * 2 1 4 4 C 1.50702 * 109.47041 * 239.99995 * 2 1 3 5 5 H 1.07997 * 119.99884 * 245.21337 * 4 2 1 6 6 C 1.37883 * 119.99919 * 65.21262 * 4 2 1 7 7 N 1.31514 * 119.99716 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99683 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47138 * 60.00655 * 8 6 4 10 10 H 1.48504 * 109.46728 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47591 * 299.99900 * 8 6 4 12 12 N 1.46893 * 109.46973 * 120.00241 * 2 1 3 13 13 C 1.47178 * 111.00397 * 77.63887 * 12 2 1 14 14 C 1.53065 * 109.22594 * 179.97438 * 13 12 2 15 15 O 1.42991 * 109.53060 * 301.31860 * 14 13 12 16 16 C 1.43181 * 113.68031 * 60.38789 * 15 14 13 17 17 C 1.46671 * 110.99931 * 200.92358 * 12 2 1 18 18 C 1.53384 * 113.55747 * 312.67925 * 17 12 2 19 19 C 1.53852 * 86.96431 * 139.93396 * 18 17 12 20 20 C 1.53364 * 113.61320 * 50.63933 * 17 12 2 21 21 H 1.09000 * 109.46982 * 64.73684 * 1 2 3 22 22 H 1.09005 * 109.46835 * 184.73381 * 1 2 3 23 23 H 1.08997 * 109.47349 * 304.73423 * 1 2 3 24 24 H 0.97003 * 119.99090 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.51002 * 299.88319 * 13 12 2 26 26 H 1.08997 * 109.51414 * 60.03508 * 13 12 2 27 27 H 1.08992 * 109.46493 * 181.29510 * 14 13 12 28 28 H 1.09005 * 109.46307 * 61.33404 * 14 13 12 29 29 H 1.08998 * 109.54644 * 63.46329 * 16 15 14 30 30 H 1.08997 * 109.55145 * 183.66164 * 16 15 14 31 31 H 1.08997 * 113.64047 * 254.45775 * 18 17 12 32 32 H 1.09009 * 113.63139 * 25.41957 * 18 17 12 33 33 H 1.08999 * 113.60779 * 220.30331 * 19 18 17 34 34 H 1.09006 * 113.59729 * 89.43658 * 19 18 17 35 35 H 1.08996 * 113.63092 * 334.63839 * 20 17 12 36 36 H 1.08998 * 113.63212 * 105.51556 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5820 -1.6350 -1.1336 6 6 1.7902 -0.1800 -2.4799 7 7 1.1203 0.9456 -2.5978 8 14 2.4134 -1.0602 -4.0050 9 1 1.8177 -2.4189 -4.0706 10 1 2.0243 -0.2910 -5.2142 11 1 3.8929 -1.1708 -3.9430 12 7 2.0197 -0.6925 1.1994 13 6 1.9182 -2.1525 1.0439 14 6 2.4383 -2.8319 2.3130 15 8 3.7950 -2.4426 2.5420 16 6 3.9659 -1.0325 2.7222 17 6 3.4007 -0.3037 1.5039 18 6 4.3302 -0.3374 0.2842 19 6 4.9554 0.9592 0.8272 20 6 3.6173 1.2141 1.5424 21 1 -0.3633 0.4386 -0.9294 22 1 -0.3633 -1.0242 0.0848 23 1 -0.3634 0.5855 0.8445 24 1 0.9503 1.3189 -3.4769 25 1 0.8764 -2.4300 0.8835 26 1 2.5160 -2.4701 0.1896 27 1 2.3863 -3.9140 2.1931 28 1 1.8258 -2.5312 3.1631 29 1 3.4342 -0.7122 3.6182 30 1 5.0266 -0.8040 2.8262 31 1 5.0156 -1.1849 0.2803 32 1 3.8103 -0.2076 -0.6651 33 1 5.1829 1.6918 0.0528 34 1 5.7891 0.7895 1.5087 35 1 2.9002 1.7732 0.9414 36 1 3.7282 1.6142 2.5503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:21 Heat of formation + Delta-G solvation = -21.907070 kcal Electronic energy + Delta-G solvation = -17233.559738 eV Core-core repulsion = 14718.352048 eV Total energy + Delta-G solvation = -2515.207690 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.70045 -38.06195 -36.77535 -34.25125 -31.26978 -30.05830 -27.72615 -27.08364 -26.19426 -24.60485 -22.37460 -21.87504 -19.04102 -18.23100 -17.72812 -16.95146 -16.62433 -16.18184 -16.03420 -14.95528 -14.94179 -14.78235 -14.25049 -13.68531 -13.43960 -13.21016 -13.09354 -12.76801 -12.55729 -12.40294 -12.38544 -12.03239 -11.81039 -11.63999 -11.51069 -11.18065 -10.96502 -10.79268 -10.40510 -10.23959 -8.83554 -8.05070 -6.16360 1.37179 1.39300 1.44946 2.40106 2.97442 3.15637 3.29596 3.87282 3.94538 3.97256 4.16888 4.27750 4.38714 4.51035 4.66252 4.70943 4.72854 4.86747 4.91736 5.05773 5.08408 5.10475 5.15159 5.23290 5.27175 5.34930 5.49888 5.59375 5.69911 5.83630 5.99455 6.25365 6.26839 6.39984 6.69787 6.97140 7.46223 8.93290 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.011432 C = 0.010835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.971558 B = 2448.669776 C = 2583.671311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.204 3.796 3 H 0.029 0.971 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.936 3.064 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.523 5.523 13 C 0.026 3.974 14 C 0.067 3.933 15 O -0.399 6.399 16 C 0.094 3.906 17 C 0.055 3.945 18 C -0.190 4.190 19 C -0.130 4.130 20 C -0.123 4.123 21 H 0.050 0.950 22 H 0.028 0.972 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -2.903 8.660 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 H 0.047 0.953 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.763 3.237 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.246 5.246 13 C -0.103 4.103 14 C -0.010 4.010 15 O -0.318 6.318 16 C 0.017 3.983 17 C -0.036 4.036 18 C -0.229 4.229 19 C -0.167 4.167 20 C -0.160 4.160 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.290 -2.773 8.942 10.298 hybrid contribution 0.273 -0.282 -2.096 2.132 sum 4.563 -3.055 6.847 8.777 Atomic orbital electron populations 1.21541 0.98007 0.98465 0.99243 1.19226 0.91910 0.93987 0.85122 0.95341 1.21859 1.34072 1.08653 0.92305 0.92224 1.25515 0.95528 0.95524 1.01138 1.70012 1.40923 1.20049 1.24071 0.85952 0.78804 0.78917 0.80049 1.20024 1.21209 1.20150 1.62583 1.18801 1.05629 1.37559 1.22636 1.00842 0.89406 0.97373 1.22757 0.82396 0.99800 0.96060 1.87914 1.27790 1.23582 1.92530 1.22460 1.01452 0.79771 0.94607 1.22794 0.88571 0.96350 0.95908 1.24127 0.99283 0.97221 1.02265 1.22749 0.96723 0.97475 0.99783 1.22942 0.97368 0.94767 1.00955 0.93126 0.95291 0.95558 0.93043 0.91112 0.95027 0.87200 0.92040 0.91694 0.87204 0.93801 0.87495 0.92559 0.88499 0.91515 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.46 9.26 71.98 0.67 -4.79 16 2 C 0.20 9.88 1.76 44.17 0.08 9.96 16 3 H 0.03 1.53 5.25 -2.39 -0.01 1.52 16 4 C -0.53 -27.39 4.67 25.60 0.12 -27.27 16 5 H 0.06 3.13 4.86 -2.91 -0.01 3.12 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -50.96 11.70 21.45 0.25 -50.71 16 8 Si 0.94 42.99 29.54 68.60 2.03 45.02 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 N -0.52 -21.65 4.63 -824.76 -3.82 -25.47 16 13 C 0.03 1.00 4.86 86.27 0.42 1.42 16 14 C 0.07 2.08 6.94 72.00 0.50 2.58 16 15 O -0.40 -13.36 10.84 -148.98 -1.61 -14.97 16 16 C 0.09 2.89 6.05 71.92 0.44 3.33 16 17 C 0.05 2.02 1.01 3.76 0.00 2.02 16 18 C -0.19 -7.62 6.09 31.01 0.19 -7.43 16 19 C -0.13 -4.26 7.73 31.17 0.24 -4.02 16 20 C -0.12 -4.27 7.08 31.00 0.22 -4.05 16 21 H 0.05 2.66 6.40 -2.39 -0.02 2.64 16 22 H 0.03 1.30 6.90 -2.38 -0.02 1.29 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.07 2.75 6.92 -2.39 -0.02 2.73 16 26 H 0.03 1.39 5.40 -2.39 -0.01 1.38 16 27 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.11 2.90 7.34 -2.39 -0.02 2.88 16 31 H 0.04 1.72 8.09 -2.39 -0.02 1.70 16 32 H 0.11 5.19 4.22 -2.38 -0.01 5.18 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 2.56 7.64 -2.38 -0.02 2.54 16 35 H 0.07 2.75 5.67 -2.39 -0.01 2.74 16 36 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 Total: -1.00 -57.02 264.56 1.23 -55.78 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.07 Total: 16.92 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 3.32 Total: -26.57 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -3.56 Total: -76.18 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.61 Total: -14.97 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -57.02 1.23 -55.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.875 kcal (2) G-P(sol) polarization free energy of solvation -57.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds