Wall clock time and date at job start Mon Mar 30 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47297 * 2 1 4 4 C 1.50699 * 109.46993 * 120.00245 * 2 1 3 5 5 H 1.08002 * 119.99923 * 119.99996 * 4 2 1 6 6 C 1.37875 * 120.00017 * 300.27281 * 4 2 1 7 7 N 1.31515 * 120.00098 * 359.72504 * 6 4 2 8 8 Si 1.86805 * 120.00191 * 179.72649 * 6 4 2 9 9 H 1.48491 * 109.47102 * 89.99995 * 8 6 4 10 10 H 1.48501 * 109.47152 * 210.00118 * 8 6 4 11 11 H 1.48501 * 109.47031 * 330.00147 * 8 6 4 12 12 N 1.46899 * 109.47204 * 239.99790 * 2 1 3 13 13 C 1.47557 * 110.99872 * 69.88546 * 12 2 1 14 14 C 1.53569 * 88.01171 * 138.33735 * 13 12 2 15 15 C 1.47070 * 110.99849 * 165.73923 * 12 2 1 16 16 C 1.52949 * 113.57842 * 106.59467 * 15 12 2 17 17 C 1.53247 * 108.86753 * 175.97073 * 16 15 12 18 18 O 1.42884 * 109.34197 * 55.45857 * 17 16 15 19 19 C 1.42885 * 114.36658 * 297.09420 * 18 17 16 20 20 C 1.52948 * 113.57442 * 336.58921 * 15 12 2 21 21 H 1.08999 * 109.47531 * 185.90185 * 1 2 3 22 22 H 1.08995 * 109.47343 * 305.90704 * 1 2 3 23 23 H 1.09004 * 109.47342 * 65.90183 * 1 2 3 24 24 H 0.97002 * 120.00273 * 179.97438 * 7 6 4 25 25 H 1.08997 * 113.46695 * 253.12927 * 13 12 2 26 26 H 1.09008 * 113.46109 * 23.55590 * 13 12 2 27 27 H 1.09001 * 114.18659 * 87.91374 * 14 13 12 28 28 H 1.08997 * 114.19600 * 220.47832 * 14 13 12 29 29 H 1.09003 * 109.56391 * 295.78576 * 16 15 12 30 30 H 1.09000 * 109.57408 * 56.15207 * 16 15 12 31 31 H 1.09002 * 109.48918 * 295.50446 * 17 16 15 32 32 H 1.08997 * 109.49744 * 175.42567 * 17 16 15 33 33 H 1.09001 * 109.49588 * 302.95066 * 19 18 17 34 34 H 1.09011 * 109.51806 * 182.88330 * 19 18 17 35 35 H 1.08996 * 109.56882 * 303.85018 * 20 15 12 36 36 H 1.09002 * 109.56651 * 64.21854 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6945 -0.2428 2.4827 7 7 0.9384 0.8265 2.6034 8 14 2.3108 -1.1279 4.0079 9 1 3.6176 -0.5546 4.4188 10 1 1.3284 -0.9597 5.1088 11 1 2.4763 -2.5730 3.7087 12 7 2.0196 -0.6925 -1.1994 13 6 1.7492 0.0995 -2.4147 14 6 3.1522 -0.2808 -2.9100 15 6 3.4499 -0.4263 -1.4147 16 6 4.3504 -1.6179 -1.0853 17 6 5.7971 -1.2592 -1.4416 18 8 6.1683 -0.0587 -0.7615 19 6 5.4056 1.0904 -1.1352 20 6 3.9363 0.8681 -0.7609 21 1 -0.3634 -1.0222 0.1057 22 1 -0.3634 0.6027 0.8323 23 1 -0.3634 0.4196 -0.9381 24 1 0.7005 1.1554 3.4844 25 1 0.9466 -0.3086 -3.0290 26 1 1.6317 1.1657 -2.2207 27 1 3.1908 -1.2174 -3.4662 28 1 3.6892 0.5323 -3.3984 29 1 4.2817 -1.8441 -0.0212 30 1 4.0355 -2.4850 -1.6658 31 1 5.8797 -1.1079 -2.5179 32 1 6.4586 -2.0698 -1.1361 33 1 5.4873 1.2472 -2.2108 34 1 5.7862 1.9666 -0.6100 35 1 3.3375 1.7054 -1.1192 36 1 3.8435 0.7874 0.3221 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606269015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:03 Heat of formation + Delta-G solvation = -11.086274 kcal Electronic energy + Delta-G solvation = -17009.340842 eV Core-core repulsion = 14494.602377 eV Total energy + Delta-G solvation = -2514.738465 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59785 -37.42409 -33.64337 -31.23077 -30.63639 -30.04920 -26.34224 -25.06727 -23.86257 -23.18244 -21.25585 -20.10711 -17.38496 -16.37246 -16.04657 -15.51254 -15.09345 -14.54931 -14.17335 -14.00326 -13.73802 -12.92669 -12.73068 -11.90508 -11.79350 -11.75100 -11.26553 -11.10188 -10.90584 -10.79537 -10.64950 -10.60194 -10.33296 -10.13601 -10.03653 -9.62275 -9.30257 -9.07123 -8.71114 -8.44296 -7.61495 -5.99734 -4.02622 3.32611 3.38934 3.43237 4.26126 4.43124 4.81618 5.01139 5.22090 5.33221 5.46043 5.50262 5.53920 5.75004 5.77688 5.82999 5.93232 6.06379 6.08010 6.25928 6.30520 6.37314 6.55572 6.59974 6.67760 6.83049 6.95544 7.05615 7.08477 7.43520 7.49846 7.59775 7.85515 8.08303 8.30402 8.53820 9.02989 9.61627 11.07410 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.011942 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.815919 B = 2344.032970 C = 2954.737346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.174 3.826 3 H 0.017 0.983 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.457 5.457 13 C -0.003 4.003 14 C -0.149 4.149 15 C 0.077 3.923 16 C -0.129 4.129 17 C 0.066 3.934 18 O -0.385 6.385 19 C 0.068 3.932 20 C -0.156 4.156 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.005 0.995 24 H 0.259 0.741 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -0.335 -8.919 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.067 3.933 3 H 0.034 0.966 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.179 5.179 13 C -0.133 4.133 14 C -0.186 4.186 15 C -0.014 4.014 16 C -0.167 4.167 17 C -0.012 4.012 18 O -0.304 6.304 19 C -0.009 4.009 20 C -0.195 4.195 21 H 0.052 0.948 22 H 0.100 0.900 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.905 -0.904 -8.525 10.410 hybrid contribution 0.078 0.455 0.759 0.888 sum 5.983 -0.448 -7.767 9.814 Atomic orbital electron populations 1.21741 0.97876 1.00344 0.98773 1.19836 0.92537 0.93310 0.87615 0.96571 1.21034 1.30492 1.12271 0.89532 0.92061 1.24909 0.95193 0.95106 0.98934 1.69899 1.36982 1.23169 1.23310 0.86584 0.78482 0.80216 0.82706 1.20694 1.21364 1.19906 1.68991 1.03350 1.42868 1.02697 1.23568 0.96624 0.97443 0.95643 1.23315 0.97620 1.01175 0.96518 1.21995 0.92310 0.94127 0.92935 1.22038 0.93494 0.97513 1.03659 1.22567 0.96017 0.87148 0.95439 1.87840 1.59017 1.17223 1.66332 1.22554 0.91668 0.88299 0.98369 1.22441 0.95226 0.96972 1.04858 0.94803 0.90028 0.97635 0.93085 0.91238 0.92455 0.89847 0.92030 0.89948 0.91228 0.93954 0.89532 0.94137 0.89486 0.91652 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.01 37.15 0.33 -2.87 16 2 C 0.17 4.31 1.28 -68.87 -0.09 4.23 16 3 H 0.02 0.44 5.48 -51.93 -0.28 0.15 16 4 C -0.49 -13.42 7.31 -34.44 -0.25 -13.67 16 5 H 0.06 1.70 6.31 -52.49 -0.33 1.36 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.37 11.38 55.43 0.63 -24.74 16 8 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.46 -9.84 5.91 -223.88 -1.32 -11.16 16 13 C 0.00 -0.06 6.39 -8.10 -0.05 -0.11 16 14 C -0.15 -2.34 7.33 -26.36 -0.19 -2.54 16 15 C 0.08 1.44 0.40 -136.41 -0.05 1.39 16 16 C -0.13 -2.29 5.57 -26.63 -0.15 -2.44 16 17 C 0.07 1.00 6.77 37.29 0.25 1.25 16 18 O -0.39 -6.71 10.72 -35.23 -0.38 -7.09 16 19 C 0.07 1.09 6.76 37.28 0.25 1.35 16 20 C -0.16 -2.96 3.66 -26.63 -0.10 -3.06 16 21 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.08 2.19 6.24 -51.93 -0.32 1.86 16 23 H 0.00 0.11 7.36 -51.93 -0.38 -0.28 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.05 6.99 -51.92 -0.36 0.69 16 27 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 28 H 0.06 0.86 7.62 -51.93 -0.40 0.47 16 29 H 0.08 1.70 6.70 -51.93 -0.35 1.35 16 30 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 31 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.57 7.64 -51.93 -0.40 0.17 16 34 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.06 1.22 6.51 -51.93 -0.34 0.88 16 36 H 0.11 2.42 6.35 -51.93 -0.33 2.09 16 LS Contribution 270.95 15.07 4.08 4.08 Total: -1.00 -28.70 270.95 -7.73 -36.42 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.58 Total: 0.82 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -0.14 Total: -14.93 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.69 Total: -35.90 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.38 Total: -7.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.70 -7.73 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.336 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds