Wall clock time and date at job start Mon Mar 30 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47297 * 2 1 4 4 C 1.50699 * 109.46993 * 120.00245 * 2 1 3 5 5 H 1.08002 * 119.99923 * 119.99996 * 4 2 1 6 6 C 1.37875 * 120.00017 * 300.27281 * 4 2 1 7 7 N 1.31515 * 120.00098 * 359.72504 * 6 4 2 8 8 Si 1.86805 * 120.00191 * 179.72649 * 6 4 2 9 9 H 1.48491 * 109.47102 * 89.99995 * 8 6 4 10 10 H 1.48501 * 109.47152 * 210.00118 * 8 6 4 11 11 H 1.48501 * 109.47031 * 330.00147 * 8 6 4 12 12 N 1.46899 * 109.47204 * 239.99790 * 2 1 3 13 13 C 1.47557 * 110.99872 * 69.88546 * 12 2 1 14 14 C 1.53569 * 88.01171 * 138.33735 * 13 12 2 15 15 C 1.47070 * 110.99849 * 165.73923 * 12 2 1 16 16 C 1.52949 * 113.57842 * 106.59467 * 15 12 2 17 17 C 1.53247 * 108.86753 * 175.97073 * 16 15 12 18 18 O 1.42884 * 109.34197 * 55.45857 * 17 16 15 19 19 C 1.42885 * 114.36658 * 297.09420 * 18 17 16 20 20 C 1.52948 * 113.57442 * 336.58921 * 15 12 2 21 21 H 1.08999 * 109.47531 * 185.90185 * 1 2 3 22 22 H 1.08995 * 109.47343 * 305.90704 * 1 2 3 23 23 H 1.09004 * 109.47342 * 65.90183 * 1 2 3 24 24 H 0.97002 * 120.00273 * 179.97438 * 7 6 4 25 25 H 1.08997 * 113.46695 * 253.12927 * 13 12 2 26 26 H 1.09008 * 113.46109 * 23.55590 * 13 12 2 27 27 H 1.09001 * 114.18659 * 87.91374 * 14 13 12 28 28 H 1.08997 * 114.19600 * 220.47832 * 14 13 12 29 29 H 1.09003 * 109.56391 * 295.78576 * 16 15 12 30 30 H 1.09000 * 109.57408 * 56.15207 * 16 15 12 31 31 H 1.09002 * 109.48918 * 295.50446 * 17 16 15 32 32 H 1.08997 * 109.49744 * 175.42567 * 17 16 15 33 33 H 1.09001 * 109.49588 * 302.95066 * 19 18 17 34 34 H 1.09011 * 109.51806 * 182.88330 * 19 18 17 35 35 H 1.08996 * 109.56882 * 303.85018 * 20 15 12 36 36 H 1.09002 * 109.56651 * 64.21854 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6945 -0.2428 2.4827 7 7 0.9384 0.8265 2.6034 8 14 2.3108 -1.1279 4.0079 9 1 3.6176 -0.5546 4.4188 10 1 1.3284 -0.9597 5.1088 11 1 2.4763 -2.5730 3.7087 12 7 2.0196 -0.6925 -1.1994 13 6 1.7492 0.0995 -2.4147 14 6 3.1522 -0.2808 -2.9100 15 6 3.4499 -0.4263 -1.4147 16 6 4.3504 -1.6179 -1.0853 17 6 5.7971 -1.2592 -1.4416 18 8 6.1683 -0.0587 -0.7615 19 6 5.4056 1.0904 -1.1352 20 6 3.9363 0.8681 -0.7609 21 1 -0.3634 -1.0222 0.1057 22 1 -0.3634 0.6027 0.8323 23 1 -0.3634 0.4196 -0.9381 24 1 0.7005 1.1554 3.4844 25 1 0.9466 -0.3086 -3.0290 26 1 1.6317 1.1657 -2.2207 27 1 3.1908 -1.2174 -3.4662 28 1 3.6892 0.5323 -3.3984 29 1 4.2817 -1.8441 -0.0212 30 1 4.0355 -2.4850 -1.6658 31 1 5.8797 -1.1079 -2.5179 32 1 6.4586 -2.0698 -1.1361 33 1 5.4873 1.2472 -2.2108 34 1 5.7862 1.9666 -0.6100 35 1 3.3375 1.7054 -1.1192 36 1 3.8435 0.7874 0.3221 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606269015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:03 Heat of formation + Delta-G solvation = -31.442576 kcal Electronic energy + Delta-G solvation = -17010.223557 eV Core-core repulsion = 14494.602377 eV Total energy + Delta-G solvation = -2515.621181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.07964 -38.78668 -35.62849 -32.90500 -32.01647 -31.71935 -28.03674 -27.07868 -25.26461 -24.56562 -22.67139 -21.90977 -18.83591 -18.38782 -17.54136 -16.83104 -16.81096 -16.00732 -15.79231 -15.54744 -15.25752 -14.79901 -14.12928 -13.69950 -13.31104 -13.18120 -13.11542 -12.84697 -12.62817 -12.52336 -12.36092 -12.25032 -11.91923 -11.82542 -11.64969 -11.21521 -10.96758 -10.68847 -10.53694 -10.27574 -9.31624 -8.11766 -6.19693 1.36764 1.37912 1.47506 2.40277 3.03972 3.16309 3.35807 3.61556 3.86459 4.11016 4.16902 4.28492 4.40728 4.52167 4.53476 4.57910 4.75522 4.79479 4.81509 4.84570 4.90825 4.97426 5.04399 5.08151 5.20409 5.21008 5.38913 5.44401 5.56372 5.64896 5.77707 6.13924 6.32960 6.36573 6.64890 6.92285 7.47358 8.94419 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.011942 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.815919 B = 2344.032970 C = 2954.737346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.182 3.818 3 H -0.005 1.005 4 C -0.500 4.500 5 H 0.048 0.952 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.480 5.480 13 C -0.008 4.008 14 C -0.121 4.121 15 C 0.066 3.934 16 C -0.128 4.128 17 C 0.068 3.932 18 O -0.405 6.405 19 C 0.073 3.927 20 C -0.150 4.150 21 H 0.022 0.978 22 H 0.056 0.944 23 H 0.027 0.973 24 H 0.259 0.741 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -0.748 -10.864 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 H 0.012 0.988 4 C -0.539 4.539 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.202 5.202 13 C -0.137 4.137 14 C -0.158 4.158 15 C -0.025 4.025 16 C -0.166 4.166 17 C -0.009 4.009 18 O -0.325 6.325 19 C -0.004 4.004 20 C -0.189 4.189 21 H 0.041 0.959 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.216 -1.324 -10.480 12.793 hybrid contribution -0.339 0.575 1.329 1.487 sum 6.877 -0.749 -9.151 11.471 Atomic orbital electron populations 1.21585 0.98179 0.99141 0.98863 1.19569 0.92174 0.92117 0.88657 0.98785 1.21233 1.29951 1.11778 0.90923 0.93356 1.25584 0.95572 0.95855 1.01482 1.70006 1.37985 1.24246 1.23728 0.85719 0.78031 0.79147 0.79756 1.20438 1.20800 1.19747 1.68926 1.05693 1.43258 1.02370 1.23648 0.98946 0.96824 0.94279 1.23234 0.95297 1.02994 0.94292 1.22183 0.90737 0.94190 0.95362 1.22029 0.95576 0.97738 1.01234 1.22706 0.94227 0.86920 0.97047 1.87824 1.59122 1.18142 1.67366 1.22606 0.89144 0.88298 1.00397 1.22291 0.97802 0.97279 1.01532 0.95917 0.92496 0.95431 0.93146 0.90049 0.93014 0.87902 0.89174 0.94094 0.90018 0.90849 0.87769 0.90832 0.88630 0.91925 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 9.01 71.98 0.65 -5.38 16 2 C 0.18 9.26 1.28 44.17 0.06 9.32 16 3 H -0.01 -0.29 5.48 -2.39 -0.01 -0.30 16 4 C -0.50 -28.00 7.31 25.60 0.19 -27.81 16 5 H 0.05 2.77 6.31 -2.91 -0.02 2.76 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.67 11.38 21.45 0.24 -53.43 16 8 Si 0.95 45.36 29.54 68.60 2.03 47.38 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.48 -20.46 5.91 -862.24 -5.10 -25.55 16 13 C -0.01 -0.27 6.39 83.17 0.53 0.26 16 14 C -0.12 -3.34 7.33 30.84 0.23 -3.12 16 15 C 0.07 2.38 0.40 0.32 0.00 2.38 16 16 C -0.13 -4.36 5.57 30.66 0.17 -4.19 16 17 C 0.07 1.85 6.77 72.06 0.49 2.34 16 18 O -0.41 -13.25 10.72 -148.98 -1.60 -14.85 16 19 C 0.07 2.16 6.76 72.06 0.49 2.65 16 20 C -0.15 -5.65 3.66 30.66 0.11 -5.54 16 21 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 3.14 6.24 -2.39 -0.01 3.12 16 23 H 0.03 1.21 7.36 -2.38 -0.02 1.19 16 24 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.05 1.83 6.99 -2.38 -0.02 1.81 16 27 H 0.10 2.51 8.06 -2.39 -0.02 2.49 16 28 H 0.09 2.04 7.62 -2.39 -0.02 2.02 16 29 H 0.04 1.72 6.70 -2.39 -0.02 1.70 16 30 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 31 H 0.07 1.59 8.09 -2.39 -0.02 1.58 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16 34 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.06 2.32 6.51 -2.39 -0.02 2.31 16 36 H 0.05 2.56 6.35 -2.39 -0.02 2.55 16 Total: -1.00 -63.50 270.95 -0.02 -63.52 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.05 Total: 10.82 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.36 Total: -27.89 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -4.85 Total: -78.98 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.60 Total: -14.85 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -63.50 -0.02 -63.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.079 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds