Wall clock time and date at job start Mon Mar 30 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47092 * 2 1 4 4 C 1.50698 * 109.47544 * 239.99357 * 2 1 3 5 5 H 1.07994 * 120.00824 * 245.35380 * 4 2 1 6 6 C 1.37879 * 119.99554 * 65.35304 * 4 2 1 7 7 N 1.31522 * 120.00270 * 355.39745 * 6 4 2 8 8 Si 1.86799 * 119.99958 * 175.40002 * 6 4 2 9 9 H 1.48503 * 109.47144 * 94.99752 * 8 6 4 10 10 H 1.48505 * 109.47210 * 214.99812 * 8 6 4 11 11 H 1.48502 * 109.47206 * 334.99934 * 8 6 4 12 12 N 1.46903 * 109.47139 * 119.99763 * 2 1 3 13 13 C 1.48064 * 111.00281 * 189.20894 * 12 2 1 14 14 C 1.54037 * 86.27525 * 137.09940 * 13 12 2 15 15 C 1.47365 * 110.99819 * 288.37610 * 12 2 1 16 16 C 1.52738 * 113.76328 * 337.33181 * 15 12 2 17 17 C 1.53283 * 108.88364 * 184.41728 * 16 15 12 18 18 O 1.42894 * 109.31960 * 304.82387 * 17 16 15 19 19 C 1.42900 * 114.38312 * 63.02900 * 18 17 16 20 20 C 1.52740 * 113.76732 * 108.27804 * 15 12 2 21 21 H 1.08997 * 109.47165 * 304.64909 * 1 2 3 22 22 H 1.08997 * 109.47093 * 64.65153 * 1 2 3 23 23 H 1.09004 * 109.47163 * 184.64461 * 1 2 3 24 24 H 0.97000 * 119.99987 * 180.02562 * 7 6 4 25 25 H 1.09001 * 113.74162 * 22.76457 * 13 12 2 26 26 H 1.08992 * 113.84320 * 251.45312 * 13 12 2 27 27 H 1.08991 * 113.76449 * 222.36858 * 14 13 12 28 28 H 1.08997 * 113.86071 * 91.00217 * 14 13 12 29 29 H 1.09004 * 109.56567 * 304.23731 * 16 15 12 30 30 H 1.08997 * 109.56911 * 64.59711 * 16 15 12 31 31 H 1.08999 * 109.50066 * 184.86909 * 17 16 15 32 32 H 1.09000 * 109.50167 * 64.77689 * 17 16 15 33 33 H 1.09003 * 109.49761 * 177.01278 * 19 18 17 34 34 H 1.09002 * 109.51781 * 56.93759 * 19 18 17 35 35 H 1.08998 * 109.56968 * 295.40918 * 20 15 12 36 36 H 1.09007 * 109.56407 * 55.76017 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5802 -1.6362 -1.1336 6 6 1.7927 -0.1787 -2.4796 7 7 1.0491 0.8990 -2.6040 8 14 2.5241 -0.9888 -3.9956 9 1 1.5289 -1.9172 -4.5896 10 1 2.8831 0.0543 -4.9898 11 1 3.7418 -1.7476 -3.6126 12 7 2.0197 -0.6925 1.1995 13 6 3.4830 -0.5236 1.3495 14 6 3.2010 -0.2863 2.8451 15 6 1.7868 0.1171 2.4086 16 6 1.6327 1.6107 2.1291 17 6 1.5074 2.3549 3.4633 18 8 0.4295 1.7961 4.2168 19 6 0.6125 0.4267 4.5819 20 6 0.6850 -0.4309 3.3135 21 1 -0.3633 0.5843 0.8454 22 1 -0.3633 0.4400 -0.9287 23 1 -0.3634 -1.0243 0.0832 24 1 0.8802 1.2729 -3.4830 25 1 3.8790 0.3510 0.8334 26 1 4.0539 -1.4301 1.1490 27 1 3.7777 0.5319 3.2763 28 1 3.2323 -1.1931 3.4490 29 1 2.5078 1.9733 1.5896 30 1 0.7371 1.7798 1.5312 31 1 1.3105 3.4101 3.2743 32 1 2.4356 2.2526 4.0255 33 1 -0.2265 0.0986 5.1956 34 1 1.5391 0.3210 5.1461 35 1 -0.2705 -0.3909 2.7906 36 1 0.9130 -1.4623 3.5827 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606269016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:05 Heat of formation + Delta-G solvation = -13.940390 kcal Electronic energy + Delta-G solvation = -16840.269120 eV Core-core repulsion = 14325.406891 eV Total energy + Delta-G solvation = -2514.862229 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52862 -37.48042 -33.61300 -31.16832 -30.80208 -30.43272 -25.86259 -25.30772 -24.00606 -23.32099 -21.28727 -20.12415 -17.55539 -16.43258 -15.92362 -15.70514 -15.02888 -14.72582 -14.36282 -14.08430 -13.81231 -12.88087 -12.67162 -12.30673 -11.87186 -11.60932 -11.37985 -11.05240 -11.01013 -10.77854 -10.72883 -10.55840 -10.51299 -10.17900 -10.02695 -9.75241 -9.32348 -9.08052 -8.91974 -8.37847 -7.55794 -6.01174 -4.05126 3.29770 3.36630 3.40625 4.10810 4.40548 4.68050 5.04613 5.10689 5.29061 5.32591 5.34896 5.42195 5.63290 5.69052 5.74766 5.91252 5.95686 6.00872 6.22848 6.28682 6.41658 6.47547 6.49094 6.60465 6.78990 6.82834 6.96565 7.13982 7.42837 7.45186 7.48060 7.83566 8.08685 8.30672 8.54482 9.02167 9.59741 11.05801 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044330 B = 0.008272 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.470553 B = 3384.249756 C = 3592.189093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.177 3.823 3 H 0.017 0.983 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.465 5.465 13 C 0.021 3.979 14 C -0.146 4.146 15 C 0.059 3.941 16 C -0.158 4.158 17 C 0.067 3.933 18 O -0.387 6.387 19 C 0.065 3.935 20 C -0.126 4.126 21 H 0.012 0.988 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 0.881 11.554 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 H 0.034 0.966 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.187 5.187 13 C -0.108 4.108 14 C -0.184 4.184 15 C -0.032 4.032 16 C -0.197 4.197 17 C -0.010 4.010 18 O -0.306 6.306 19 C -0.012 4.012 20 C -0.164 4.164 21 H 0.031 0.969 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.509 0.443 11.359 11.467 hybrid contribution 0.891 0.250 -1.222 1.533 sum 2.400 0.692 10.137 10.440 Atomic orbital electron populations 1.21825 0.97906 0.98764 1.00349 1.19764 0.92682 0.93239 0.87273 0.96575 1.21081 1.34632 1.08286 0.90076 0.92276 1.24936 0.95228 0.95157 0.98938 1.69917 1.37775 1.22001 1.23474 0.86546 0.79525 0.78987 0.82726 1.20795 1.21284 1.19926 1.68548 1.05252 1.42552 1.02389 1.23493 0.93223 1.00831 0.93288 1.23504 0.96321 1.00774 0.97813 1.22146 0.94115 0.92108 0.94879 1.22457 1.04194 0.95191 0.97832 1.22578 0.89568 0.97388 0.91447 1.87840 1.43976 1.25683 1.73091 1.22589 1.00900 0.81813 0.95935 1.21946 0.99690 0.99192 0.95558 0.96866 0.90215 0.95082 0.93048 0.91872 0.90790 0.92386 0.90115 0.90836 0.89145 0.89291 0.93718 0.89350 0.93636 0.90827 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.64 37.16 0.32 -2.92 16 2 C 0.18 4.44 1.20 -68.87 -0.08 4.36 16 3 H 0.02 0.44 5.71 -51.93 -0.30 0.15 16 4 C -0.50 -13.93 8.17 -34.44 -0.28 -14.21 16 5 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 6 C 0.06 1.63 5.35 -17.82 -0.10 1.54 16 7 N -0.89 -25.57 11.52 55.43 0.64 -24.93 16 8 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.47 -10.04 5.77 -216.51 -1.25 -11.29 16 13 C 0.02 0.40 7.09 -2.70 -0.02 0.38 16 14 C -0.15 -2.32 7.29 -26.01 -0.19 -2.51 16 15 C 0.06 1.04 0.28 -131.46 -0.04 1.01 16 16 C -0.16 -2.80 3.66 -26.72 -0.10 -2.90 16 17 C 0.07 0.99 6.79 37.30 0.25 1.25 16 18 O -0.39 -6.11 10.72 -35.23 -0.38 -6.49 16 19 C 0.06 0.89 6.79 37.30 0.25 1.14 16 20 C -0.13 -2.02 5.61 -26.72 -0.15 -2.17 16 21 H 0.01 0.29 5.16 -51.93 -0.27 0.02 16 22 H 0.08 2.17 6.24 -51.93 -0.32 1.85 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.06 1.27 7.44 -51.93 -0.39 0.89 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.06 0.82 7.74 -51.93 -0.40 0.42 16 28 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 29 H 0.07 1.34 6.83 -51.93 -0.35 0.99 16 30 H 0.09 1.83 5.36 -51.93 -0.28 1.55 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.59 7.79 -51.93 -0.40 0.18 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.31 7.20 -51.93 -0.37 0.94 16 36 H 0.07 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 272.10 15.07 4.10 4.10 Total: -1.00 -29.18 272.10 -7.61 -36.79 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.58 Total: 0.32 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.12 Total: -15.03 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.61 Total: -36.22 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.38 Total: -6.49 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.18 -7.61 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.850 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds