Wall clock time and date at job start Mon Mar 30 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47092 * 2 1 4 4 C 1.50698 * 109.47544 * 239.99357 * 2 1 3 5 5 H 1.07994 * 120.00824 * 245.35380 * 4 2 1 6 6 C 1.37879 * 119.99554 * 65.35304 * 4 2 1 7 7 N 1.31522 * 120.00270 * 355.39745 * 6 4 2 8 8 Si 1.86799 * 119.99958 * 175.40002 * 6 4 2 9 9 H 1.48503 * 109.47144 * 94.99752 * 8 6 4 10 10 H 1.48505 * 109.47210 * 214.99812 * 8 6 4 11 11 H 1.48502 * 109.47206 * 334.99934 * 8 6 4 12 12 N 1.46903 * 109.47139 * 119.99763 * 2 1 3 13 13 C 1.48064 * 111.00281 * 189.20894 * 12 2 1 14 14 C 1.54037 * 86.27525 * 137.09940 * 13 12 2 15 15 C 1.47365 * 110.99819 * 288.37610 * 12 2 1 16 16 C 1.52738 * 113.76328 * 337.33181 * 15 12 2 17 17 C 1.53283 * 108.88364 * 184.41728 * 16 15 12 18 18 O 1.42894 * 109.31960 * 304.82387 * 17 16 15 19 19 C 1.42900 * 114.38312 * 63.02900 * 18 17 16 20 20 C 1.52740 * 113.76732 * 108.27804 * 15 12 2 21 21 H 1.08997 * 109.47165 * 304.64909 * 1 2 3 22 22 H 1.08997 * 109.47093 * 64.65153 * 1 2 3 23 23 H 1.09004 * 109.47163 * 184.64461 * 1 2 3 24 24 H 0.97000 * 119.99987 * 180.02562 * 7 6 4 25 25 H 1.09001 * 113.74162 * 22.76457 * 13 12 2 26 26 H 1.08992 * 113.84320 * 251.45312 * 13 12 2 27 27 H 1.08991 * 113.76449 * 222.36858 * 14 13 12 28 28 H 1.08997 * 113.86071 * 91.00217 * 14 13 12 29 29 H 1.09004 * 109.56567 * 304.23731 * 16 15 12 30 30 H 1.08997 * 109.56911 * 64.59711 * 16 15 12 31 31 H 1.08999 * 109.50066 * 184.86909 * 17 16 15 32 32 H 1.09000 * 109.50167 * 64.77689 * 17 16 15 33 33 H 1.09003 * 109.49761 * 177.01278 * 19 18 17 34 34 H 1.09002 * 109.51781 * 56.93759 * 19 18 17 35 35 H 1.08998 * 109.56968 * 295.40918 * 20 15 12 36 36 H 1.09007 * 109.56407 * 55.76017 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5802 -1.6362 -1.1336 6 6 1.7927 -0.1787 -2.4796 7 7 1.0491 0.8990 -2.6040 8 14 2.5241 -0.9888 -3.9956 9 1 1.5289 -1.9172 -4.5896 10 1 2.8831 0.0543 -4.9898 11 1 3.7418 -1.7476 -3.6126 12 7 2.0197 -0.6925 1.1995 13 6 3.4830 -0.5236 1.3495 14 6 3.2010 -0.2863 2.8451 15 6 1.7868 0.1171 2.4086 16 6 1.6327 1.6107 2.1291 17 6 1.5074 2.3549 3.4633 18 8 0.4295 1.7961 4.2168 19 6 0.6125 0.4267 4.5819 20 6 0.6850 -0.4309 3.3135 21 1 -0.3633 0.5843 0.8454 22 1 -0.3633 0.4400 -0.9287 23 1 -0.3634 -1.0243 0.0832 24 1 0.8802 1.2729 -3.4830 25 1 3.8790 0.3510 0.8334 26 1 4.0539 -1.4301 1.1490 27 1 3.7777 0.5319 3.2763 28 1 3.2323 -1.1931 3.4490 29 1 2.5078 1.9733 1.5896 30 1 0.7371 1.7798 1.5312 31 1 1.3105 3.4101 3.2743 32 1 2.4356 2.2526 4.0255 33 1 -0.2265 0.0986 5.1956 34 1 1.5391 0.3210 5.1461 35 1 -0.2705 -0.3909 2.7906 36 1 0.9130 -1.4623 3.5827 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606269016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:05 Heat of formation + Delta-G solvation = -34.421604 kcal Electronic energy + Delta-G solvation = -16841.157252 eV Core-core repulsion = 14325.406891 eV Total energy + Delta-G solvation = -2515.750361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.98162 -38.77055 -35.61492 -32.72900 -32.24657 -32.00873 -27.54211 -27.32763 -25.41641 -24.60422 -22.67850 -21.95607 -18.97392 -18.39190 -17.42334 -16.92003 -16.75859 -16.12615 -15.83087 -15.65352 -15.37293 -14.45899 -14.24373 -13.98169 -13.35497 -13.13604 -13.04695 -12.84245 -12.76613 -12.54994 -12.24901 -12.20041 -12.01348 -11.89213 -11.71813 -11.24413 -10.92485 -10.79013 -10.60874 -10.30677 -9.27231 -8.14475 -6.26046 1.37504 1.38371 1.49389 2.39152 3.00097 3.13749 3.21636 3.63974 3.80148 4.03959 4.10481 4.25966 4.37032 4.46028 4.50117 4.59276 4.73403 4.77499 4.78125 4.85354 4.90175 4.97887 5.03061 5.05938 5.15433 5.19902 5.30489 5.41936 5.50316 5.62138 5.71432 6.09896 6.30421 6.31714 6.63190 6.89327 7.43048 8.91347 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044330 B = 0.008272 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.470553 B = 3384.249756 C = 3592.189093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.188 3.812 3 H -0.008 1.008 4 C -0.521 4.521 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.486 5.486 13 C 0.012 3.988 14 C -0.119 4.119 15 C 0.052 3.948 16 C -0.155 4.155 17 C 0.074 3.926 18 O -0.402 6.402 19 C 0.067 3.933 20 C -0.124 4.124 21 H 0.027 0.973 22 H 0.051 0.949 23 H 0.022 0.978 24 H 0.261 0.739 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 0.472 13.331 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 H 0.009 0.991 4 C -0.559 4.559 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.208 5.208 13 C -0.117 4.117 14 C -0.157 4.157 15 C -0.038 4.038 16 C -0.193 4.193 17 C -0.004 4.004 18 O -0.322 6.322 19 C -0.010 4.010 20 C -0.162 4.162 21 H 0.046 0.954 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.469 0.030 13.152 13.382 hybrid contribution 0.579 0.367 -1.763 1.892 sum 3.048 0.397 11.389 11.796 Atomic orbital electron populations 1.21623 0.98231 0.98037 0.99409 1.19475 0.92271 0.91912 0.88360 0.99051 1.21360 1.34767 1.08156 0.91622 0.93309 1.25708 0.95516 0.95750 1.01786 1.70039 1.38565 1.23100 1.24128 0.85559 0.78836 0.78157 0.79173 1.20405 1.20641 1.19375 1.68481 1.06849 1.43238 1.02266 1.23530 0.91761 1.00262 0.96165 1.23387 0.94309 1.02491 0.95491 1.22333 0.96405 0.91704 0.93403 1.22362 1.01860 0.95872 0.99239 1.22600 0.90611 0.97444 0.89699 1.87835 1.44660 1.26742 1.72916 1.22741 1.03235 0.80257 0.94757 1.21962 0.97561 1.00469 0.96224 0.95443 0.93039 0.95848 0.92968 0.93534 0.90640 0.89752 0.87948 0.92109 0.92683 0.88143 0.91085 0.87164 0.91117 0.93444 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.92 8.64 71.98 0.62 -5.30 16 2 C 0.19 9.68 1.20 44.17 0.05 9.73 16 3 H -0.01 -0.45 5.71 -2.39 -0.01 -0.46 16 4 C -0.52 -29.56 8.17 25.60 0.21 -29.35 16 5 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 6 C 0.01 0.63 5.35 84.65 0.45 1.08 16 7 N -0.92 -53.97 11.52 21.45 0.25 -53.72 16 8 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.49 -21.00 5.77 -838.90 -4.84 -25.84 16 13 C 0.01 0.45 7.09 86.39 0.61 1.06 16 14 C -0.12 -3.41 7.29 31.09 0.23 -3.19 16 15 C 0.05 1.79 0.28 3.36 0.00 1.80 16 16 C -0.15 -5.42 3.66 30.60 0.11 -5.31 16 17 C 0.07 1.99 6.79 72.08 0.49 2.48 16 18 O -0.40 -11.61 10.72 -148.98 -1.60 -13.21 16 19 C 0.07 1.60 6.79 72.08 0.49 2.09 16 20 C -0.12 -3.74 5.61 30.60 0.17 -3.57 16 21 H 0.03 1.28 5.16 -2.39 -0.01 1.27 16 22 H 0.05 2.91 6.24 -2.39 -0.01 2.90 16 23 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.05 1.90 7.44 -2.39 -0.02 1.88 16 26 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.08 2.02 7.74 -2.39 -0.02 2.00 16 28 H 0.10 2.54 8.01 -2.39 -0.02 2.52 16 29 H 0.06 2.24 6.83 -2.38 -0.02 2.23 16 30 H 0.05 2.30 5.36 -2.39 -0.01 2.28 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 1.57 7.79 -2.39 -0.02 1.55 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.66 7.20 -2.39 -0.02 1.65 16 36 H 0.09 2.36 8.03 -2.38 -0.02 2.35 16 Total: -1.00 -63.91 272.10 0.32 -63.58 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.05 Total: 10.96 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.44 Total: -28.48 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.60 Total: -79.57 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.60 Total: -13.21 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.91 0.32 -63.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.163 kcal (2) G-P(sol) polarization free energy of solvation -63.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds