Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47216 * 2 1 4 4 C 1.53002 * 109.47172 * 240.00345 * 2 1 3 5 5 C 1.50697 * 109.47484 * 174.99793 * 4 2 1 6 6 H 1.08000 * 119.99690 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00464 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99497 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00222 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47145 * 60.00038 * 9 7 5 11 11 H 1.48500 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46961 * 300.00428 * 9 7 5 13 13 N 1.46894 * 109.47383 * 120.00466 * 2 1 3 14 14 C 1.46831 * 110.99921 * 58.95104 * 13 2 1 15 15 C 1.53297 * 109.41182 * 170.24089 * 14 13 2 16 16 C 1.51473 * 108.22473 * 53.79125 * 15 14 13 17 17 O 1.20758 * 121.10421 * 130.95983 * 16 15 14 18 18 C 1.51437 * 117.78215 * 310.97666 * 16 15 14 19 19 H 1.09002 * 109.70974 * 289.34291 * 18 16 15 20 20 C 1.52997 * 109.74076 * 168.73558 * 18 16 15 21 21 C 1.46826 * 110.99876 * 294.26862 * 13 2 1 22 22 H 1.08996 * 109.46894 * 299.99773 * 1 2 3 23 23 H 1.09008 * 109.47185 * 59.99609 * 1 2 3 24 24 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47583 * 295.00336 * 4 2 1 26 26 H 1.09003 * 109.47215 * 55.00051 * 4 2 1 27 27 H 0.97002 * 119.99483 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.48429 * 290.22931 * 14 13 2 29 29 H 1.08999 * 109.48361 * 50.25890 * 14 13 2 30 30 H 1.08998 * 109.71204 * 173.48913 * 15 14 13 31 31 H 1.09001 * 109.71457 * 294.11690 * 15 14 13 32 32 H 1.09000 * 109.47471 * 301.19307 * 20 18 16 33 33 H 1.09007 * 109.47193 * 61.19781 * 20 18 16 34 34 H 1.09001 * 109.47298 * 181.19236 * 20 18 16 35 35 H 1.08994 * 109.48266 * 309.72582 * 21 13 2 36 36 H 1.09004 * 109.48622 * 69.75727 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8376 -3.2996 9 14 6.0922 -1.0621 -2.4363 10 1 6.6838 -1.6881 -1.2267 11 1 6.5872 -1.7620 -3.6489 12 1 6.4854 0.3686 -2.4958 13 7 2.0197 -0.6925 1.1993 14 6 1.5285 -2.0755 1.2457 15 6 2.2478 -2.8343 2.3668 16 6 2.0835 -2.0489 3.6516 17 8 1.7181 -2.5867 4.6691 18 6 2.3924 -0.5667 3.6173 19 1 3.4670 -0.4176 3.5110 20 6 1.9052 0.0927 4.9090 21 6 1.6639 0.0476 2.4164 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.7516 -1.7714 -1.2058 26 1 1.6054 -0.2616 -2.1370 27 1 4.0608 -2.2443 -4.0351 28 1 0.4556 -2.0740 1.4380 29 1 1.7262 -2.5637 0.2915 30 1 1.8072 -3.8245 2.4821 31 1 3.3069 -2.9283 2.1265 32 1 0.8325 -0.0676 5.0166 33 1 2.4256 -0.3468 5.7600 34 1 2.1106 1.1625 4.8706 35 1 1.9595 1.0910 2.3068 36 1 0.5871 -0.0104 2.5756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000663905632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = -47.217474 kcal Electronic energy + Delta-G solvation = -16294.672591 eV Core-core repulsion = 13778.367359 eV Total energy + Delta-G solvation = -2516.305231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96162 -37.76070 -34.14845 -32.60702 -31.84022 -29.22556 -27.32995 -26.06607 -23.55077 -22.53430 -22.29235 -19.17860 -18.40103 -16.21339 -16.00049 -15.46811 -15.11641 -14.64620 -14.47573 -14.24547 -13.51095 -13.07962 -12.72985 -12.38343 -12.22787 -11.87809 -11.81313 -11.65695 -11.46068 -11.34345 -11.01509 -10.89703 -10.66031 -10.49300 -10.36199 -9.99577 -9.24286 -9.13773 -8.99033 -8.29383 -7.62628 -5.93124 -3.91505 2.15297 3.37971 3.42468 3.45393 4.20022 4.38504 4.52801 4.98174 5.03238 5.21236 5.42916 5.43858 5.54451 5.59709 5.66289 5.69647 5.79317 5.91343 5.92131 5.99481 6.07085 6.09762 6.21556 6.30097 6.36665 6.51913 6.65192 6.89330 7.42320 7.58427 7.68835 7.81370 7.93315 8.07641 8.52211 9.14474 9.70689 11.18663 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.008028 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.142808 B = 3487.100399 C = 3796.402628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.073 0.927 4 C 0.028 3.972 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.516 5.516 14 C 0.060 3.940 15 C -0.164 4.164 16 C 0.368 3.632 17 O -0.470 6.470 18 C -0.138 4.138 19 H 0.112 0.888 20 C -0.137 4.137 21 C 0.064 3.936 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.258 0.742 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 2.565 10.567 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.019 4.019 3 H 0.091 0.909 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.239 5.239 14 C -0.068 4.068 15 C -0.202 4.202 16 C 0.244 3.756 17 O -0.344 6.344 18 C -0.158 4.158 19 H 0.130 0.870 20 C -0.194 4.194 21 C -0.064 4.064 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.729 2.169 10.903 11.726 hybrid contribution 0.235 0.068 -0.215 0.325 sum -3.494 2.237 10.689 11.466 Atomic orbital electron populations 1.22546 0.99656 1.01386 1.00872 1.21923 0.90088 0.98526 0.91367 0.90860 1.19258 0.96468 0.95356 0.89862 1.21132 0.91704 1.33256 1.07124 0.92082 1.25006 0.98020 0.95825 0.95958 1.69950 1.35373 1.36749 1.12314 0.86696 0.86318 0.78026 0.77123 1.20358 1.21672 1.20501 1.61875 1.59666 1.01177 1.01168 1.22093 0.95131 0.90074 0.99497 1.22410 1.04634 0.99139 0.94057 1.25090 0.70483 0.91240 0.88773 1.90336 1.35309 1.73546 1.35251 1.21954 1.03407 0.93965 0.96434 0.87011 1.21615 1.01449 1.00204 0.96172 1.22091 0.96625 0.98434 0.89278 0.94071 0.92342 0.92935 0.96094 0.96178 0.93202 0.95473 0.87745 0.89670 0.87282 0.92696 0.92103 0.92007 0.90127 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 8.52 37.16 0.32 -2.69 16 2 C 0.09 1.68 2.28 -67.72 -0.15 1.52 16 3 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 4 C 0.03 0.66 4.28 -27.88 -0.12 0.54 16 5 C -0.49 -13.17 8.84 -34.44 -0.30 -13.48 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 N -0.52 -9.01 4.27 -226.39 -0.97 -9.97 16 14 C 0.06 1.00 4.59 -3.71 -0.02 0.99 16 15 C -0.16 -2.48 6.35 -27.35 -0.17 -2.65 16 16 C 0.37 5.62 6.64 -28.29 -0.19 5.43 16 17 O -0.47 -8.17 16.94 6.00 0.10 -8.06 16 18 C -0.14 -1.87 3.17 -91.25 -0.29 -2.16 16 19 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 20 C -0.14 -1.61 8.63 37.16 0.32 -1.29 16 21 C 0.06 0.93 4.27 -3.71 -0.02 0.91 16 22 H 0.04 0.59 6.77 -51.93 -0.35 0.24 16 23 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 24 H 0.05 0.85 6.61 -51.93 -0.34 0.51 16 25 H 0.02 0.53 5.99 -51.93 -0.31 0.22 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.43 6.82 -51.93 -0.35 0.08 16 29 H 0.10 1.99 5.78 -51.93 -0.30 1.69 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.10 7.99 -51.93 -0.42 0.68 16 36 H 0.03 0.43 6.92 -51.93 -0.36 0.07 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -29.27 284.41 -7.36 -36.63 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.77 Total: -2.06 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.72 Total: -11.54 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.23 Total: -35.64 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.10 Total: -8.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.27 -7.36 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000663905632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.589 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds