Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47216 * 2 1 4 4 C 1.53002 * 109.47172 * 240.00345 * 2 1 3 5 5 C 1.50697 * 109.47484 * 174.99793 * 4 2 1 6 6 H 1.08000 * 119.99690 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00464 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99497 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00222 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47145 * 60.00038 * 9 7 5 11 11 H 1.48500 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46961 * 300.00428 * 9 7 5 13 13 N 1.46894 * 109.47383 * 120.00466 * 2 1 3 14 14 C 1.46831 * 110.99921 * 58.95104 * 13 2 1 15 15 C 1.53297 * 109.41182 * 170.24089 * 14 13 2 16 16 C 1.51473 * 108.22473 * 53.79125 * 15 14 13 17 17 O 1.20758 * 121.10421 * 130.95983 * 16 15 14 18 18 C 1.51437 * 117.78215 * 310.97666 * 16 15 14 19 19 H 1.09002 * 109.70974 * 289.34291 * 18 16 15 20 20 C 1.52997 * 109.74076 * 168.73558 * 18 16 15 21 21 C 1.46826 * 110.99876 * 294.26862 * 13 2 1 22 22 H 1.08996 * 109.46894 * 299.99773 * 1 2 3 23 23 H 1.09008 * 109.47185 * 59.99609 * 1 2 3 24 24 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47583 * 295.00336 * 4 2 1 26 26 H 1.09003 * 109.47215 * 55.00051 * 4 2 1 27 27 H 0.97002 * 119.99483 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.48429 * 290.22931 * 14 13 2 29 29 H 1.08999 * 109.48361 * 50.25890 * 14 13 2 30 30 H 1.08998 * 109.71204 * 173.48913 * 15 14 13 31 31 H 1.09001 * 109.71457 * 294.11690 * 15 14 13 32 32 H 1.09000 * 109.47471 * 301.19307 * 20 18 16 33 33 H 1.09007 * 109.47193 * 61.19781 * 20 18 16 34 34 H 1.09001 * 109.47298 * 181.19236 * 20 18 16 35 35 H 1.08994 * 109.48266 * 309.72582 * 21 13 2 36 36 H 1.09004 * 109.48622 * 69.75727 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8376 -3.2996 9 14 6.0922 -1.0621 -2.4363 10 1 6.6838 -1.6881 -1.2267 11 1 6.5872 -1.7620 -3.6489 12 1 6.4854 0.3686 -2.4958 13 7 2.0197 -0.6925 1.1993 14 6 1.5285 -2.0755 1.2457 15 6 2.2478 -2.8343 2.3668 16 6 2.0835 -2.0489 3.6516 17 8 1.7181 -2.5867 4.6691 18 6 2.3924 -0.5667 3.6173 19 1 3.4670 -0.4176 3.5110 20 6 1.9052 0.0927 4.9090 21 6 1.6639 0.0476 2.4164 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.7516 -1.7714 -1.2058 26 1 1.6054 -0.2616 -2.1370 27 1 4.0608 -2.2443 -4.0351 28 1 0.4556 -2.0740 1.4380 29 1 1.7262 -2.5637 0.2915 30 1 1.8072 -3.8245 2.4821 31 1 3.3069 -2.9283 2.1265 32 1 0.8325 -0.0676 5.0166 33 1 2.4256 -0.3468 5.7600 34 1 2.1106 1.1625 4.8706 35 1 1.9595 1.0910 2.3068 36 1 0.5871 -0.0104 2.5756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000663905632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = -65.131871 kcal Electronic energy + Delta-G solvation = -16295.449417 eV Core-core repulsion = 13778.367359 eV Total energy + Delta-G solvation = -2517.082058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22153 -39.14495 -35.63967 -34.31633 -33.24645 -30.70293 -29.02219 -27.22381 -25.25267 -23.93622 -23.63551 -20.59877 -19.68386 -18.29295 -17.30131 -16.76719 -16.50213 -16.30495 -15.78447 -15.67478 -14.85303 -14.60570 -14.03773 -13.78688 -13.67816 -13.30530 -13.21813 -12.95456 -12.82331 -12.66794 -12.57065 -12.44866 -12.21527 -12.01690 -11.94140 -11.53675 -11.06377 -10.95964 -10.45488 -10.29533 -8.97996 -8.05788 -6.09958 0.92964 1.46469 1.47774 1.55073 2.51043 2.95603 3.15085 3.30920 3.82478 3.92583 4.01674 4.22319 4.29621 4.32150 4.45275 4.53685 4.58333 4.67392 4.77659 4.79439 4.92303 4.97694 5.06766 5.11675 5.16578 5.23485 5.26879 5.31031 5.55256 5.74651 5.94742 6.28027 6.40047 6.46822 6.56436 7.04654 7.56084 9.05927 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.008028 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.142808 B = 3487.100399 C = 3796.402628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.097 3.903 3 H 0.074 0.926 4 C 0.032 3.968 5 C -0.497 4.497 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.941 5.941 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.271 1.271 13 N -0.532 5.532 14 C 0.066 3.934 15 C -0.161 4.161 16 C 0.371 3.629 17 O -0.491 6.491 18 C -0.133 4.133 19 H 0.118 0.882 20 C -0.131 4.131 21 C 0.067 3.933 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.002 0.998 26 H -0.008 1.008 27 H 0.257 0.743 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 3.658 12.159 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.092 0.908 4 C -0.005 4.005 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.196 1.196 13 N -0.255 5.255 14 C -0.063 4.063 15 C -0.199 4.199 16 C 0.249 3.751 17 O -0.367 6.367 18 C -0.152 4.152 19 H 0.135 0.865 20 C -0.189 4.189 21 C -0.061 4.061 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.020 0.980 26 H 0.010 0.990 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.417 3.276 12.511 13.377 hybrid contribution 0.116 -0.282 -0.711 0.773 sum -3.301 2.994 11.800 12.614 Atomic orbital electron populations 1.22425 0.97390 1.01582 1.02174 1.21618 0.91852 0.97616 0.89950 0.90832 1.19131 0.95243 0.94652 0.91512 1.21490 0.93195 1.32226 1.06649 0.91932 1.25812 1.02506 0.95802 0.95855 1.70084 1.37047 1.38101 1.13070 0.85690 0.81057 0.78273 0.77095 1.19566 1.21838 1.19621 1.61776 1.60357 1.01556 1.01836 1.21955 0.95933 0.89853 0.98519 1.22379 1.04327 0.99574 0.93663 1.25262 0.69576 0.92118 0.88116 1.90336 1.36363 1.74132 1.35836 1.21959 1.03712 0.92531 0.97046 0.86462 1.21591 1.01114 1.01379 0.94814 1.22149 0.97305 0.98734 0.87870 0.91448 0.92327 0.93299 0.97960 0.98965 0.93405 0.94462 0.90810 0.88728 0.87589 0.92979 0.92269 0.89790 0.88721 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.44 8.52 71.98 0.61 -4.83 16 2 C 0.10 3.61 2.28 44.92 0.10 3.71 16 3 H 0.07 2.72 8.02 -2.39 -0.02 2.70 16 4 C 0.03 1.55 4.28 29.85 0.13 1.67 16 5 C -0.50 -26.66 8.84 25.60 0.23 -26.44 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -56.13 13.29 21.45 0.28 -55.85 16 9 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.53 -17.80 4.27 -870.16 -3.72 -21.51 16 14 C 0.07 2.15 4.59 86.42 0.40 2.55 16 15 C -0.16 -4.71 6.35 30.19 0.19 -4.52 16 16 C 0.37 10.66 6.64 29.58 0.20 10.86 16 17 O -0.49 -16.22 16.94 -1.44 -0.02 -16.24 16 18 C -0.13 -3.25 3.17 -11.20 -0.04 -3.29 16 19 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 20 C -0.13 -2.67 8.63 71.98 0.62 -2.05 16 21 C 0.07 1.74 4.27 86.42 0.37 2.11 16 22 H 0.07 1.73 6.77 -2.39 -0.02 1.71 16 23 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.05 1.53 6.61 -2.39 -0.02 1.51 16 25 H 0.00 0.12 5.99 -2.39 -0.01 0.10 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.04 1.14 6.82 -2.39 -0.02 1.12 16 29 H 0.07 2.89 5.78 -2.39 -0.01 2.87 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.24 8.06 -2.38 -0.02 1.22 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 2.23 7.99 -2.39 -0.02 2.21 16 36 H 0.04 0.98 6.92 -2.39 -0.02 0.96 16 Total: -1.00 -62.21 284.41 2.89 -59.33 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.04 Total: 8.28 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.27 Total: -19.96 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -3.43 Total: -77.36 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.02 Total: -16.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -62.21 2.89 -59.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000663905632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.806 kcal (2) G-P(sol) polarization free energy of solvation -62.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds