Wall clock time and date at job start Mon Mar 30 2020 02:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46845 * 2 1 4 4 C 1.52997 * 109.47179 * 239.99867 * 2 1 3 5 5 C 1.50701 * 109.47091 * 62.06868 * 4 2 1 6 6 H 1.08003 * 119.99898 * 5.62322 * 5 4 2 7 7 C 1.37877 * 120.00330 * 185.62802 * 5 4 2 8 8 N 1.31518 * 119.99606 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46928 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46712 * 120.00273 * 9 7 5 12 12 H 1.48493 * 109.47441 * 240.00410 * 9 7 5 13 13 N 1.46899 * 109.47389 * 119.99827 * 2 1 3 14 14 C 1.46832 * 111.00140 * 176.75391 * 13 2 1 15 15 C 1.52876 * 109.48218 * 189.62211 * 14 13 2 16 16 C 1.51440 * 108.46366 * 306.44889 * 15 14 13 17 17 O 1.20758 * 121.11597 * 228.98820 * 16 15 14 18 18 C 1.51443 * 117.77246 * 48.71487 * 16 15 14 19 19 H 1.08993 * 109.70730 * 70.91346 * 18 16 15 20 20 C 1.53003 * 109.70571 * 191.49486 * 18 16 15 21 21 C 1.46828 * 111.00159 * 301.44214 * 13 2 1 22 22 H 1.09000 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46833 * 299.99751 * 1 2 3 24 24 H 1.08996 * 109.47222 * 60.00103 * 1 2 3 25 25 H 1.09002 * 109.47014 * 182.06396 * 4 2 1 26 26 H 1.09001 * 109.47374 * 302.06833 * 4 2 1 27 27 H 0.96999 * 119.99501 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47810 * 309.73173 * 14 13 2 29 29 H 1.08996 * 109.47766 * 69.76087 * 14 13 2 30 30 H 1.08995 * 109.65503 * 186.66629 * 15 14 13 31 31 H 1.08998 * 109.55450 * 66.17371 * 15 14 13 32 32 H 1.09002 * 109.47025 * 60.00307 * 20 18 16 33 33 H 1.09006 * 109.46977 * 179.97438 * 20 18 16 34 34 H 1.09000 * 109.46920 * 299.99953 * 20 18 16 35 35 H 1.09002 * 109.48585 * 50.26605 * 21 13 2 36 36 H 1.09000 * 109.48257 * 290.22320 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5800 0.0181 -2.4791 6 1 1.0620 0.9606 -2.3804 7 6 1.8204 -0.5086 -3.7304 8 7 2.4507 -1.6566 -3.8506 9 14 1.2495 0.4075 -5.2550 10 1 0.5699 1.6647 -4.8514 11 1 2.4225 0.7306 -6.1064 12 1 0.3029 -0.4442 -6.0189 13 7 2.0198 -0.6924 1.1994 14 6 3.4855 -0.7796 1.1952 15 6 3.9445 -1.7055 2.3217 16 6 3.3313 -1.2225 3.6194 17 8 4.0052 -1.0719 4.6101 18 6 1.8457 -0.9285 3.6315 19 1 1.2859 -1.8616 3.5677 20 6 1.4759 -0.1922 4.9207 21 6 1.5211 -0.0469 2.4202 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 3.1294 -0.7534 -1.2308 26 1 1.6468 -1.7377 -1.2680 27 1 2.6195 -2.0274 -4.7309 28 1 3.8233 -1.1753 0.2373 29 1 3.9090 0.2130 1.3483 30 1 5.0315 -1.6802 2.3971 31 1 3.6134 -2.7233 2.1152 32 1 2.0300 0.7449 4.9756 33 1 0.4063 0.0178 4.9252 34 1 1.7281 -0.8143 5.7795 35 1 0.4417 0.0862 2.3463 36 1 2.0000 0.9250 2.5392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000663905638.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:06 Heat of formation + Delta-G solvation = -66.320570 kcal Electronic energy + Delta-G solvation = -16028.744558 eV Core-core repulsion = 13511.610954 eV Total energy + Delta-G solvation = -2517.133604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22291 -39.07594 -35.81632 -34.31124 -33.55498 -30.88946 -28.78467 -27.47429 -25.33296 -23.81454 -23.30991 -20.71593 -19.97906 -18.66166 -17.19269 -16.82205 -16.57940 -16.07797 -16.02838 -15.44419 -15.12485 -14.77563 -14.21200 -13.88832 -13.56556 -13.23919 -13.14905 -13.04691 -12.74802 -12.71622 -12.61612 -12.42141 -12.16236 -12.07797 -11.72034 -11.66272 -11.12665 -11.05651 -10.52443 -10.27920 -9.22426 -8.15465 -6.23665 0.90378 1.41914 1.43392 1.55015 2.42958 2.87964 3.10861 3.19149 3.77615 3.88478 3.96923 4.17712 4.25429 4.38288 4.42515 4.46783 4.65704 4.70183 4.75803 4.76170 4.94069 4.97313 5.04264 5.12429 5.16624 5.26244 5.28672 5.48497 5.54763 5.74107 5.82338 6.11265 6.28653 6.36655 6.49174 6.92635 7.44256 8.96683 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050559 B = 0.006187 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.680277 B = 4524.189469 C = 4912.974888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.096 3.904 3 H 0.021 0.979 4 C 0.037 3.963 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.543 5.543 14 C 0.058 3.942 15 C -0.159 4.159 16 C 0.369 3.631 17 O -0.490 6.490 18 C -0.131 4.131 19 H 0.125 0.875 20 C -0.133 4.133 21 C 0.062 3.938 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.053 0.947 25 H -0.005 1.005 26 H 0.000 1.000 27 H 0.261 0.739 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 2.235 12.860 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.011 4.011 3 H 0.039 0.961 4 C 0.000 4.000 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.267 5.267 14 C -0.070 4.070 15 C -0.197 4.197 16 C 0.247 3.753 17 O -0.366 6.366 18 C -0.150 4.150 19 H 0.143 0.857 20 C -0.191 4.191 21 C -0.066 4.066 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.018 0.982 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.634 1.742 13.245 13.617 hybrid contribution 0.442 0.906 -1.271 1.622 sum -2.192 2.648 11.974 12.458 Atomic orbital electron populations 1.21707 0.93493 1.01745 1.01234 1.21530 0.96365 0.94154 0.89072 0.96077 1.19062 0.94555 0.95155 0.91253 1.21613 1.36580 1.06614 0.91914 0.92129 1.25853 0.95454 0.95764 1.02416 1.70102 1.42973 1.19964 1.24210 0.85507 0.77989 0.78948 0.79254 1.18576 1.20861 1.20616 1.61831 1.08924 1.53695 1.02286 1.21983 0.88229 0.97714 0.99077 1.22297 1.02041 1.02308 0.93033 1.25289 0.91744 0.70288 0.88015 1.90347 1.66118 1.42230 1.37876 1.21960 0.94023 1.02417 0.96618 0.85716 1.21612 1.02712 0.99815 0.94977 1.22258 1.02408 0.94290 0.87618 0.93044 0.91278 0.92810 0.98647 0.98155 0.92984 0.90287 0.95323 0.88559 0.86643 0.93301 0.89638 0.92006 0.87702 0.95136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.72 71.98 0.63 -3.65 16 2 C 0.10 3.73 2.14 44.92 0.10 3.83 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.04 1.85 4.24 29.85 0.13 1.98 16 5 C -0.53 -28.63 8.27 25.60 0.21 -28.41 16 6 H 0.06 3.16 7.08 -2.91 -0.02 3.13 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 9 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.54 -17.71 4.45 -871.02 -3.87 -21.58 16 14 C 0.06 1.87 5.26 86.28 0.45 2.33 16 15 C -0.16 -4.24 6.32 30.04 0.19 -4.05 16 16 C 0.37 9.97 6.65 29.57 0.20 10.16 16 17 O -0.49 -15.59 16.91 -1.45 -0.02 -15.62 16 18 C -0.13 -2.96 3.17 -11.20 -0.04 -3.00 16 19 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 20 C -0.13 -2.58 8.65 71.98 0.62 -1.95 16 21 C 0.06 1.58 4.60 86.42 0.40 1.98 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.86 6.18 -2.38 -0.01 1.84 16 24 H 0.05 2.00 6.87 -2.39 -0.02 1.98 16 25 H 0.00 -0.25 6.04 -2.39 -0.01 -0.26 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.08 2.96 5.69 -2.39 -0.01 2.94 16 29 H 0.03 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.21 8.03 -2.39 -0.02 1.19 16 35 H 0.10 2.37 5.79 -2.39 -0.01 2.36 16 36 H 0.03 0.80 8.10 -2.39 -0.02 0.78 16 Total: -1.00 -62.74 284.30 2.81 -59.93 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.04 Total: 7.24 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 3.35 Total: -20.17 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -3.59 Total: -76.64 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.02 Total: -15.62 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.74 2.81 -59.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000663905638.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.386 kcal (2) G-P(sol) polarization free energy of solvation -62.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds