Wall clock time and date at job start Mon Mar 30 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46741 * 2 1 4 4 C 1.52994 * 109.47413 * 120.00020 * 2 1 3 5 5 C 1.50698 * 109.47143 * 63.11426 * 4 2 1 6 6 H 1.08001 * 120.00092 * 5.00946 * 5 4 2 7 7 C 1.37883 * 119.99947 * 185.01508 * 5 4 2 8 8 N 1.31511 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99876 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46933 * 59.99922 * 9 7 5 11 11 H 1.48494 * 109.46812 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47066 * 299.99920 * 9 7 5 13 13 N 1.46901 * 109.47179 * 240.00216 * 2 1 3 14 14 C 1.46826 * 111.00264 * 188.71919 * 13 2 1 15 15 C 1.53292 * 109.39899 * 170.24282 * 14 13 2 16 16 C 1.51438 * 108.24055 * 53.79964 * 15 14 13 17 17 O 1.20764 * 121.11272 * 130.95848 * 16 15 14 18 18 C 1.51440 * 117.78725 * 310.97835 * 16 15 14 19 19 H 1.08996 * 109.69657 * 289.32459 * 18 16 15 20 20 C 1.53003 * 109.71851 * 168.70205 * 18 16 15 21 21 C 1.46835 * 110.99865 * 64.03300 * 13 2 1 22 22 H 1.09005 * 109.46741 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47122 * 299.99610 * 1 2 3 24 24 H 1.08999 * 109.47665 * 59.99939 * 1 2 3 25 25 H 1.09003 * 109.47199 * 183.11480 * 4 2 1 26 26 H 1.09003 * 109.47096 * 303.11070 * 4 2 1 27 27 H 0.97002 * 120.00274 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.48393 * 290.22684 * 14 13 2 29 29 H 1.09003 * 109.48048 * 50.25786 * 14 13 2 30 30 H 1.09002 * 109.70929 * 173.47989 * 15 14 13 31 31 H 1.08996 * 109.71424 * 294.10819 * 15 14 13 32 32 H 1.09001 * 109.46778 * 301.20283 * 20 18 16 33 33 H 1.08996 * 109.47565 * 61.20558 * 20 18 16 34 34 H 1.09007 * 109.46541 * 181.21271 * 20 18 16 35 35 H 1.08999 * 109.48564 * 309.73591 * 21 13 2 36 36 H 1.08999 * 109.48234 * 69.76404 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6018 -2.1625 1.2112 6 1 1.0881 -2.5481 0.3429 7 6 1.8564 -2.9891 2.2851 8 7 2.4822 -2.5197 3.3422 9 14 1.3125 -4.7755 2.2383 10 1 1.9652 -5.4618 1.0946 11 1 1.7029 -5.4451 3.5049 12 1 -0.1624 -4.8399 2.0779 13 7 2.0197 -0.6925 -1.1995 14 6 3.4725 -0.8947 -1.1341 15 6 3.9087 -1.8249 -2.2717 16 6 3.3966 -1.2509 -3.5762 17 8 4.1252 -1.1242 -4.5309 18 6 1.9405 -0.8405 -3.6436 19 1 1.3079 -1.7281 -3.6359 20 6 1.6890 -0.0378 -4.9216 21 6 1.6292 0.0268 -2.4186 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1286 -0.6731 1.2775 26 1 1.6319 -0.2406 2.1383 27 1 2.6617 -3.1012 4.0975 28 1 3.9781 0.0656 -1.2354 29 1 3.7342 -1.3441 -0.1762 30 1 4.9966 -1.8867 -2.2994 31 1 3.4874 -2.8181 -2.1166 32 1 2.3313 0.8429 -4.9298 33 1 1.9114 -0.6579 -5.7899 34 1 0.6449 0.2738 -4.9554 35 1 0.5611 0.2421 -2.3874 36 1 2.1865 0.9613 -2.4836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000663905646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:08 Heat of formation + Delta-G solvation = -61.965631 kcal Electronic energy + Delta-G solvation = -16359.939702 eV Core-core repulsion = 13842.994942 eV Total energy + Delta-G solvation = -2516.944760 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17693 -39.06191 -35.71340 -34.16434 -33.45856 -30.74616 -28.84555 -27.23642 -25.32924 -23.83986 -23.29103 -20.65476 -19.95364 -18.32031 -17.25817 -16.75715 -16.48874 -16.11603 -15.87205 -15.42166 -15.07704 -14.69359 -14.16233 -13.83205 -13.51903 -13.13491 -12.96036 -12.91194 -12.70137 -12.68308 -12.55428 -12.39781 -12.14958 -12.02890 -11.91713 -11.55123 -10.99411 -10.98233 -10.44012 -10.24186 -9.03516 -8.04059 -6.07197 0.93333 1.47769 1.48418 1.55579 2.52048 2.93974 3.15356 3.32484 3.82887 3.93351 4.03326 4.22691 4.30594 4.42816 4.47844 4.52669 4.68576 4.71776 4.76304 4.79844 4.98140 5.06167 5.11604 5.15553 5.19023 5.28152 5.31464 5.52175 5.60738 5.74354 5.94752 6.24844 6.38840 6.48200 6.58256 7.08635 7.58988 9.08181 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.008290 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.836213 B = 3376.761200 C = 3697.153431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.096 3.904 3 H 0.022 0.978 4 C 0.026 3.974 5 C -0.482 4.482 6 H 0.072 0.928 7 C -0.005 4.005 8 N -0.943 5.943 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.296 1.296 12 H -0.271 1.271 13 N -0.528 5.528 14 C 0.066 3.934 15 C -0.159 4.159 16 C 0.370 3.630 17 O -0.492 6.492 18 C -0.131 4.131 19 H 0.122 0.878 20 C -0.132 4.132 21 C 0.063 3.937 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.067 0.933 25 H -0.005 1.005 26 H -0.005 1.005 27 H 0.256 0.744 28 H 0.026 0.974 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 4.099 -12.420 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.011 4.011 3 H 0.039 0.961 4 C -0.011 4.011 5 C -0.520 4.520 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.586 5.586 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.222 1.222 12 H -0.196 1.196 13 N -0.253 5.253 14 C -0.062 4.062 15 C -0.197 4.197 16 C 0.248 3.752 17 O -0.368 6.368 18 C -0.150 4.150 19 H 0.139 0.861 20 C -0.189 4.189 21 C -0.064 4.064 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.780 3.667 -12.765 13.569 hybrid contribution 0.515 -0.232 0.813 0.990 sum -2.266 3.436 -11.952 12.641 Atomic orbital electron populations 1.21689 0.93591 1.02182 1.00746 1.21528 0.96392 0.93194 0.90006 0.96053 1.19201 0.94602 0.95569 0.91775 1.21416 1.34603 0.95121 1.00905 0.90984 1.25822 0.96242 1.02383 0.95670 1.70091 1.44315 1.37161 1.07013 0.85726 0.78895 0.80934 0.76780 1.19531 1.22210 1.19601 1.61639 1.12050 1.49828 1.01761 1.21964 0.88133 0.97104 0.99023 1.22350 1.02350 1.01783 0.93249 1.25306 0.90856 0.71521 0.87525 1.90336 1.61005 1.45376 1.40076 1.21948 0.94488 1.01790 0.96803 0.86071 1.21597 1.02913 0.99404 0.95020 1.22239 1.02644 0.93714 0.87848 0.92545 0.93318 0.91412 0.98727 0.98713 0.93540 0.95630 0.90114 0.89013 0.87321 0.93220 0.92205 0.89611 0.87868 0.95117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.88 71.98 0.64 -3.49 16 2 C 0.10 3.60 2.35 44.91 0.11 3.71 16 3 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 4 C 0.03 1.24 4.17 29.85 0.12 1.37 16 5 C -0.48 -25.02 7.49 25.60 0.19 -24.83 16 6 H 0.07 3.64 6.86 -2.91 -0.02 3.62 16 7 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 8 N -0.94 -55.92 13.29 21.45 0.28 -55.64 16 9 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.53 -17.74 3.77 -870.18 -3.28 -21.02 16 14 C 0.07 2.27 5.06 86.42 0.44 2.71 16 15 C -0.16 -4.78 6.35 30.18 0.19 -4.59 16 16 C 0.37 10.76 6.64 29.57 0.20 10.96 16 17 O -0.49 -16.52 16.94 -1.46 -0.02 -16.54 16 18 C -0.13 -3.17 3.17 -11.20 -0.04 -3.20 16 19 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 20 C -0.13 -2.66 8.63 71.98 0.62 -2.04 16 21 C 0.06 1.65 4.66 86.41 0.40 2.05 16 22 H 0.06 2.07 6.93 -2.38 -0.02 2.05 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 1.76 6.31 -2.39 -0.02 1.74 16 25 H -0.01 -0.28 6.30 -2.39 -0.02 -0.30 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.03 0.85 8.10 -2.39 -0.02 0.83 16 29 H 0.08 3.34 5.42 -2.39 -0.01 3.33 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.24 8.06 -2.39 -0.02 1.22 16 34 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.10 2.34 6.00 -2.39 -0.01 2.33 16 36 H 0.03 0.80 8.10 -2.39 -0.02 0.78 16 Total: -1.00 -61.35 283.24 3.39 -57.96 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.04 Total: 6.96 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.34 Total: -17.19 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.00 Total: -76.66 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.02 Total: -16.54 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -61.35 3.39 -57.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000663905646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.003 kcal (2) G-P(sol) polarization free energy of solvation -61.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds