Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.60113 * 2 1 4 4 C 1.53336 * 109.60439 * 120.49348 * 2 1 3 5 5 C 1.53073 * 108.42581 * 187.28907 * 4 2 1 6 6 C 1.50175 * 109.89171 * 311.09931 * 5 4 2 7 7 O 1.21276 * 118.25046 * 197.60560 * 6 5 4 8 8 N 1.32957 * 123.39195 * 17.52991 * 6 5 4 9 9 C 1.46505 * 117.64571 * 177.87223 * 8 6 5 10 10 C 1.53001 * 109.46987 * 270.00663 * 9 8 6 11 11 C 1.52999 * 109.47035 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47356 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99759 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00075 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99951 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47033 * 59.99985 * 16 14 12 18 18 H 1.48496 * 109.47307 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47447 * 300.00039 * 16 14 12 20 20 C 1.45758 * 124.41276 * 357.87592 * 8 6 5 21 21 H 1.08996 * 109.46713 * 180.31877 * 1 2 3 22 22 H 1.08998 * 109.46897 * 300.31632 * 1 2 3 23 23 H 1.08996 * 109.47095 * 60.31760 * 1 2 3 24 24 H 1.08998 * 109.67812 * 307.01947 * 4 2 1 25 25 H 1.09003 * 109.67815 * 67.55965 * 4 2 1 26 26 H 1.08999 * 109.40436 * 71.22797 * 5 4 2 27 27 H 1.09001 * 109.40329 * 191.05831 * 5 4 2 28 28 H 1.09003 * 109.46913 * 30.00395 * 9 8 6 29 29 H 1.08997 * 109.47279 * 150.00158 * 9 8 6 30 30 H 1.08989 * 109.47135 * 299.99753 * 10 9 8 31 31 H 1.09004 * 109.47137 * 59.99682 * 10 9 8 32 32 H 1.09003 * 109.47190 * 299.99931 * 11 10 9 33 33 H 1.09004 * 109.47117 * 60.00039 * 11 10 9 34 34 H 0.97006 * 120.00657 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.30363 * 258.75736 * 20 8 6 36 36 H 1.08998 * 109.30258 * 139.17301 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0445 -0.7330 1.2447 5 6 3.5638 -0.5602 1.3144 6 6 4.1769 -0.8865 -0.0171 7 8 5.3666 -1.1178 -0.0601 8 7 3.4825 -0.9362 -1.1499 9 6 4.2168 -1.2203 -2.3854 10 6 4.6903 0.0933 -3.0108 11 6 5.4577 -0.2035 -4.3007 12 6 5.9246 1.0903 -4.9165 13 1 5.6972 2.0302 -4.4355 14 6 6.6422 1.0741 -6.0937 15 7 6.9187 -0.0704 -6.6795 16 14 7.2203 2.6779 -6.8572 17 1 8.1110 3.3872 -5.9039 18 1 7.9652 2.3899 -8.1091 19 1 6.0449 3.5316 -7.1653 20 6 2.0430 -0.7272 -1.2436 21 1 -0.3632 -1.0276 0.0057 22 1 -0.3633 0.5187 0.8871 23 1 -0.3633 0.5089 -0.8928 24 1 1.5855 -0.3075 2.1371 25 1 1.7986 -1.7926 1.1745 26 1 3.7993 0.4707 1.5786 27 1 3.9700 -1.2300 2.0724 28 1 5.0796 -1.8469 -2.1593 29 1 3.5630 -1.7411 -3.0850 30 1 3.8276 0.7198 -3.2368 31 1 5.3441 0.6140 -2.3111 32 1 6.3205 -0.8299 -4.0743 33 1 4.8042 -0.7244 -5.0006 34 1 7.4232 -0.0818 -7.5079 35 1 1.5436 -1.6923 -1.3283 36 1 1.8227 -0.1287 -2.1275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685973275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = -65.008110 kcal Electronic energy + Delta-G solvation = -15670.659189 eV Core-core repulsion = 13153.582497 eV Total energy + Delta-G solvation = -2517.076691 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37283 -36.82701 -35.20385 -33.22342 -31.29991 -31.01843 -27.09561 -26.05486 -24.32364 -23.12021 -21.23683 -20.06679 -18.60022 -16.54843 -16.37317 -15.95292 -15.17226 -14.70684 -14.51976 -14.23631 -13.68620 -13.34658 -13.17112 -12.74422 -12.47227 -12.26712 -11.90622 -11.54579 -11.38024 -11.09379 -11.00448 -10.82841 -10.70478 -10.69401 -10.56148 -9.63087 -9.62168 -9.22502 -9.11940 -8.30105 -8.29169 -5.95152 -3.97262 2.93187 3.28710 3.36546 3.40550 3.43638 4.47097 4.50184 4.51128 4.58835 4.73656 5.21057 5.23432 5.35255 5.40404 5.43509 5.48617 5.55266 5.66065 5.70422 5.77611 5.87980 5.91625 6.03710 6.14713 6.28803 6.48574 6.71725 7.03128 7.16357 7.71467 7.76197 7.89233 8.04603 8.45445 8.50422 9.08999 9.66198 11.16244 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039600 B = 0.005462 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.905751 B = 5125.411451 C = 5379.149008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.509 3.491 7 O -0.553 6.553 8 N -0.600 5.600 9 C 0.103 3.897 10 C -0.119 4.119 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.053 0.947 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.118 3.882 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 -1.440 14.449 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.175 4.175 6 C 0.297 3.703 7 O -0.432 6.432 8 N -0.331 5.331 9 C -0.019 4.019 10 C -0.157 4.157 11 C -0.014 4.014 12 C -0.557 4.557 13 H 0.071 0.929 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.006 4.006 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.452 -1.647 14.284 19.690 hybrid contribution 0.280 0.928 -0.565 1.122 sum -13.172 -0.719 13.719 19.033 Atomic orbital electron populations 1.21734 0.93832 1.02183 1.02268 1.21479 0.96514 1.00351 0.94567 0.90092 1.21721 0.94408 1.01186 0.98128 1.21660 0.96101 1.04354 0.95387 1.19947 0.87131 0.77439 0.85800 1.90739 1.15674 1.49776 1.87008 1.47357 1.08043 1.69483 1.08244 1.21838 0.96742 0.99650 0.83631 1.21911 0.99592 0.94866 0.99342 1.19032 0.94955 0.97086 0.90281 1.21194 1.34337 0.92966 1.07230 0.92877 1.25013 0.96123 0.96167 0.97122 1.69953 1.40098 1.24837 1.18652 0.86657 0.78852 0.83944 0.78532 1.20255 1.21264 1.20300 1.21459 0.80260 1.00135 0.98713 0.92363 0.92185 0.92112 0.90775 0.91234 0.88582 0.88565 0.89767 0.91153 0.93599 0.93057 0.96353 0.96607 0.92975 0.91885 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.11 -0.99 2.79 -90.49 -0.25 -1.25 16 3 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 4 C -0.12 -0.99 5.33 -26.52 -0.14 -1.13 16 5 C -0.14 -1.52 6.03 -28.10 -0.17 -1.69 16 6 C 0.51 8.37 7.44 -12.05 -0.09 8.28 16 7 O -0.55 -11.76 16.15 5.56 0.09 -11.67 16 8 N -0.60 -9.35 2.80 -175.07 -0.49 -9.84 16 9 C 0.10 1.92 5.20 -4.04 -0.02 1.90 16 10 C -0.12 -2.62 5.46 -26.73 -0.15 -2.76 16 11 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 12 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 16 Si 0.89 22.24 29.54 -169.99 -5.02 17.21 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 C 0.12 1.34 5.64 -4.48 -0.03 1.32 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.74 7.11 -51.93 -0.37 1.37 16 29 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 30 H 0.05 0.96 8.14 -51.94 -0.42 0.54 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -33.78 294.80 -7.54 -41.32 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -6.24 Total: -5.14 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.05 Total: -9.46 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.25 Total: -36.71 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.78 -7.54 -41.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685973275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.689 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds