Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.60113 * 2 1 4 4 C 1.53336 * 109.60439 * 120.49348 * 2 1 3 5 5 C 1.53073 * 108.42581 * 187.28907 * 4 2 1 6 6 C 1.50175 * 109.89171 * 311.09931 * 5 4 2 7 7 O 1.21276 * 118.25046 * 197.60560 * 6 5 4 8 8 N 1.32957 * 123.39195 * 17.52991 * 6 5 4 9 9 C 1.46505 * 117.64571 * 177.87223 * 8 6 5 10 10 C 1.53001 * 109.46987 * 270.00663 * 9 8 6 11 11 C 1.52999 * 109.47035 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47356 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99759 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00075 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99951 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47033 * 59.99985 * 16 14 12 18 18 H 1.48496 * 109.47307 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47447 * 300.00039 * 16 14 12 20 20 C 1.45758 * 124.41276 * 357.87592 * 8 6 5 21 21 H 1.08996 * 109.46713 * 180.31877 * 1 2 3 22 22 H 1.08998 * 109.46897 * 300.31632 * 1 2 3 23 23 H 1.08996 * 109.47095 * 60.31760 * 1 2 3 24 24 H 1.08998 * 109.67812 * 307.01947 * 4 2 1 25 25 H 1.09003 * 109.67815 * 67.55965 * 4 2 1 26 26 H 1.08999 * 109.40436 * 71.22797 * 5 4 2 27 27 H 1.09001 * 109.40329 * 191.05831 * 5 4 2 28 28 H 1.09003 * 109.46913 * 30.00395 * 9 8 6 29 29 H 1.08997 * 109.47279 * 150.00158 * 9 8 6 30 30 H 1.08989 * 109.47135 * 299.99753 * 10 9 8 31 31 H 1.09004 * 109.47137 * 59.99682 * 10 9 8 32 32 H 1.09003 * 109.47190 * 299.99931 * 11 10 9 33 33 H 1.09004 * 109.47117 * 60.00039 * 11 10 9 34 34 H 0.97006 * 120.00657 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.30363 * 258.75736 * 20 8 6 36 36 H 1.08998 * 109.30258 * 139.17301 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0445 -0.7330 1.2447 5 6 3.5638 -0.5602 1.3144 6 6 4.1769 -0.8865 -0.0171 7 8 5.3666 -1.1178 -0.0601 8 7 3.4825 -0.9362 -1.1499 9 6 4.2168 -1.2203 -2.3854 10 6 4.6903 0.0933 -3.0108 11 6 5.4577 -0.2035 -4.3007 12 6 5.9246 1.0903 -4.9165 13 1 5.6972 2.0302 -4.4355 14 6 6.6422 1.0741 -6.0937 15 7 6.9187 -0.0704 -6.6795 16 14 7.2203 2.6779 -6.8572 17 1 8.1110 3.3872 -5.9039 18 1 7.9652 2.3899 -8.1091 19 1 6.0449 3.5316 -7.1653 20 6 2.0430 -0.7272 -1.2436 21 1 -0.3632 -1.0276 0.0057 22 1 -0.3633 0.5187 0.8871 23 1 -0.3633 0.5089 -0.8928 24 1 1.5855 -0.3075 2.1371 25 1 1.7986 -1.7926 1.1745 26 1 3.7993 0.4707 1.5786 27 1 3.9700 -1.2300 2.0724 28 1 5.0796 -1.8469 -2.1593 29 1 3.5630 -1.7411 -3.0850 30 1 3.8276 0.7198 -3.2368 31 1 5.3441 0.6140 -2.3111 32 1 6.3205 -0.8299 -4.0743 33 1 4.8042 -0.7244 -5.0006 34 1 7.4232 -0.0818 -7.5079 35 1 1.5436 -1.6923 -1.3283 36 1 1.8227 -0.1287 -2.1275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685973275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -86.260147 kcal Electronic energy + Delta-G solvation = -15671.580746 eV Core-core repulsion = 13153.582497 eV Total energy + Delta-G solvation = -2517.998249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58342 -37.92859 -36.75843 -35.11665 -32.98011 -32.07154 -28.81274 -27.12010 -25.62079 -24.56600 -22.59506 -21.65314 -19.63508 -18.55163 -17.61936 -17.41632 -16.52239 -16.38708 -15.70751 -15.36329 -15.26832 -14.58095 -14.18607 -14.06069 -13.89479 -13.36752 -13.27951 -13.14715 -12.70651 -12.65663 -12.50966 -12.29593 -12.04959 -11.69871 -11.59822 -11.58382 -11.45442 -11.31166 -10.61000 -10.58107 -9.68391 -8.22403 -6.34560 1.37458 1.41552 1.49507 1.65328 2.07344 2.39593 3.10072 3.58913 3.74866 3.81977 3.92546 4.12630 4.24946 4.49232 4.50334 4.55882 4.57460 4.67937 4.77779 4.82285 4.88336 4.98654 5.01731 5.08556 5.12822 5.21264 5.36729 5.42076 5.48955 5.54869 5.66744 5.79541 6.20770 6.55110 6.80430 7.20662 7.34488 8.89305 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039600 B = 0.005462 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.905751 B = 5125.411451 C = 5379.149008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.127 4.127 6 C 0.497 3.503 7 O -0.613 6.613 8 N -0.597 5.597 9 C 0.112 3.888 10 C -0.099 4.099 11 C 0.028 3.972 12 C -0.548 4.548 13 H 0.056 0.944 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.262 1.262 20 C 0.108 3.892 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.028 0.972 32 H -0.016 1.016 33 H 0.004 0.996 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.261 -0.242 15.370 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.146 4.146 5 C -0.167 4.167 6 C 0.287 3.713 7 O -0.497 6.497 8 N -0.327 5.327 9 C -0.011 4.011 10 C -0.138 4.138 11 C -0.009 4.009 12 C -0.586 4.586 13 H 0.074 0.926 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.014 4.014 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.002 0.998 33 H 0.022 0.978 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.627 -0.443 15.220 21.819 hybrid contribution 0.936 0.515 -0.867 1.376 sum -14.691 0.072 14.354 20.539 Atomic orbital electron populations 1.21698 0.91677 1.03034 1.03006 1.21480 0.98092 0.99527 0.93387 0.90810 1.21736 0.91947 1.01842 0.99074 1.21694 0.98075 1.05017 0.91896 1.21020 0.86564 0.76081 0.87599 1.90710 1.18461 1.52469 1.88016 1.47449 1.09692 1.68702 1.06835 1.21478 0.96816 0.97329 0.85507 1.21627 0.98894 0.96677 0.96580 1.18916 0.93985 0.95787 0.92242 1.21612 1.35167 0.93773 1.08014 0.92588 1.25999 0.95915 1.00270 0.97544 1.70086 1.40568 1.27388 1.19141 0.85468 0.78752 0.79021 0.77605 1.19617 1.20425 1.18711 1.21823 0.77544 1.01681 1.00321 0.91463 0.90705 0.92186 0.87757 0.90578 0.87539 0.87596 0.92546 0.89094 0.92176 0.95336 0.99756 0.97800 0.92615 0.89908 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.11 -1.59 2.79 -10.71 -0.03 -1.62 16 3 H 0.07 1.24 8.13 -2.38 -0.02 1.22 16 4 C -0.11 -1.46 5.33 30.73 0.16 -1.29 16 5 C -0.13 -2.63 6.03 29.71 0.18 -2.45 16 6 C 0.50 16.38 7.44 87.77 0.65 17.03 16 7 O -0.61 -27.19 16.15 -3.02 -0.05 -27.24 16 8 N -0.60 -18.39 2.80 -827.20 -2.32 -20.71 16 9 C 0.11 4.28 5.20 86.38 0.45 4.73 16 10 C -0.10 -4.51 5.46 30.59 0.17 -4.34 16 11 C 0.03 1.59 4.97 29.85 0.15 1.74 16 12 C -0.55 -32.89 9.11 25.60 0.23 -32.65 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.00 0.04 5.46 84.66 0.46 0.50 16 15 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 16 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.11 2.25 5.64 86.49 0.49 2.74 16 21 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 0.97 8.13 -2.39 -0.02 0.95 16 26 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 2.47 7.11 -2.39 -0.02 2.46 16 29 H 0.09 3.07 8.01 -2.39 -0.02 3.05 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 35 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -75.75 294.80 4.54 -71.21 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.02 Total: 3.55 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 3.58 Total: -16.30 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -2.03 Total: -78.87 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.75 4.54 -71.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685973275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.049 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds