Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48598 * 111.00216 * 2 1 4 4 C 1.54474 * 104.60716 * 201.17777 * 3 2 1 5 5 C 1.53858 * 104.91080 * 23.80255 * 4 3 2 6 6 C 1.48657 * 110.99750 * 244.50175 * 2 1 3 7 7 C 1.52603 * 110.06057 * 118.53041 * 5 4 3 8 8 C 1.53269 * 109.18747 * 65.76837 * 7 5 4 9 9 C 1.53176 * 108.96883 * 56.16272 * 8 7 5 10 10 C 1.53089 * 109.26718 * 302.60853 * 9 8 7 11 11 H 1.08991 * 109.48868 * 298.02396 * 10 9 8 12 12 C 1.50699 * 109.48224 * 177.98667 * 10 9 8 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 O 1.42332 * 110.21489 * 240.93175 * 5 4 3 21 21 H 1.09001 * 109.46923 * 59.86996 * 1 2 3 22 22 H 1.09000 * 109.46929 * 179.87226 * 1 2 3 23 23 H 1.09003 * 109.46834 * 299.87096 * 1 2 3 24 24 H 1.09001 * 110.40681 * 82.39394 * 3 2 1 25 25 H 1.08997 * 110.40932 * 319.96167 * 3 2 1 26 26 H 1.09000 * 110.35225 * 264.94540 * 4 3 2 27 27 H 1.09000 * 110.35612 * 142.65776 * 4 3 2 28 28 H 1.09001 * 110.42546 * 39.93179 * 6 2 1 29 29 H 1.09003 * 110.43199 * 277.44210 * 6 2 1 30 30 H 1.08999 * 109.51611 * 305.85591 * 7 5 4 31 31 H 1.09000 * 109.52167 * 185.68544 * 7 5 4 32 32 H 1.08994 * 109.55216 * 296.31934 * 8 7 5 33 33 H 1.08998 * 109.63401 * 176.06075 * 8 7 5 34 34 H 1.09005 * 109.50504 * 182.67051 * 9 8 7 35 35 H 1.09002 * 109.53749 * 62.57062 * 9 8 7 36 36 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3873 0.0000 4 6 3.4425 1.2514 -0.5400 5 6 3.4363 -0.0493 -1.3619 6 6 2.0017 -0.5974 -1.2527 7 6 3.7718 0.2512 -2.8199 8 6 5.2157 0.7573 -2.9105 9 6 6.1485 -0.2839 -2.2844 10 6 5.7213 -0.5391 -0.8366 11 1 5.8135 0.3827 -0.2624 12 6 6.6051 -1.5990 -0.2312 13 1 7.3929 -2.0460 -0.8193 14 6 6.4078 -1.9983 1.0737 15 7 7.1794 -2.9230 1.6023 16 14 5.0447 -1.2259 2.0909 17 1 3.7959 -2.0118 1.9232 18 1 4.8167 0.1690 1.6352 19 1 5.4378 -1.2208 3.5229 20 8 4.3616 -0.9817 -0.8140 21 1 -0.3633 0.5159 -0.8888 22 1 -0.3633 -1.0277 -0.0023 23 1 -0.3633 0.5118 0.8912 24 1 2.0116 1.7905 1.0126 25 1 1.4077 2.0224 -0.6572 26 1 4.1509 1.1752 0.2849 27 1 3.6905 2.1007 -1.1766 28 1 1.4067 -0.2794 -2.1088 29 1 2.0145 -1.6850 -1.1801 30 1 3.0936 1.0153 -3.1997 31 1 3.6665 -0.6575 -3.4126 32 1 5.3064 1.6998 -2.3707 33 1 5.4861 0.9078 -3.9556 34 1 7.1729 0.0882 -2.3014 35 1 6.0895 -1.2135 -2.8505 36 1 7.0404 -3.2041 2.5202 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686228259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -64.861849 kcal Electronic energy + Delta-G solvation = -16989.671370 eV Core-core repulsion = 14472.601021 eV Total energy + Delta-G solvation = -2517.070349 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26957 -38.28531 -34.93506 -34.34468 -32.95481 -31.04073 -28.89084 -27.21428 -25.61148 -23.59824 -22.77220 -21.91986 -19.63346 -19.00595 -17.64973 -17.15481 -16.33110 -15.98593 -15.75612 -15.42997 -15.01876 -14.60811 -14.34602 -14.07347 -13.76114 -13.28951 -13.20508 -12.92752 -12.59625 -12.58338 -12.40918 -12.25428 -12.15690 -11.75067 -11.67490 -11.46858 -11.25227 -10.91617 -10.66049 -9.88612 -9.38455 -8.36386 -6.48623 1.36944 1.47681 1.57967 2.38573 2.79984 3.09198 3.40271 3.70356 3.78881 4.04768 4.12405 4.19210 4.30145 4.35602 4.40435 4.51245 4.61483 4.67483 4.71696 4.74143 4.82151 4.97202 4.97702 5.00032 5.06873 5.08103 5.23395 5.26967 5.32070 5.57514 5.62263 5.87336 6.12838 6.23197 6.56909 6.97603 7.28978 8.76885 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.013669 C = 0.009955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.658392 B = 2047.895901 C = 2811.888032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.549 5.549 3 C 0.041 3.959 4 C -0.161 4.161 5 C 0.093 3.907 6 C 0.050 3.950 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.133 4.133 10 C 0.188 3.812 11 H 0.017 0.983 12 C -0.526 4.526 13 H 0.043 0.957 14 C 0.029 3.971 15 N -0.939 5.939 16 Si 0.972 3.028 17 H -0.284 1.284 18 H -0.241 1.241 19 H -0.307 1.307 20 O -0.391 6.391 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 11.750 -7.656 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.274 5.274 3 C -0.087 4.087 4 C -0.199 4.199 5 C 0.053 3.947 6 C -0.077 4.077 7 C -0.166 4.166 8 C -0.151 4.151 9 C -0.171 4.171 10 C 0.133 3.867 11 H 0.035 0.965 12 C -0.563 4.563 13 H 0.061 0.939 14 C -0.171 4.171 15 N -0.579 5.579 16 Si 0.800 3.200 17 H -0.210 1.210 18 H -0.166 1.166 19 H -0.236 1.236 20 O -0.312 6.312 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.353 11.180 -6.976 18.760 hybrid contribution -0.188 0.111 0.103 0.241 sum -13.541 11.291 -6.872 18.923 Atomic orbital electron populations 1.22531 0.86267 1.02515 1.01787 1.65303 1.09878 1.16267 1.35950 1.23087 0.94402 0.89766 1.01430 1.23146 0.97754 0.98566 1.00453 1.22035 0.89946 0.89379 0.93329 1.23037 0.92915 1.00113 0.91679 1.22044 0.97589 1.02084 0.94884 1.21636 0.94120 0.97875 1.01508 1.21979 0.99526 0.99007 0.96609 1.20003 0.79200 0.94009 0.93529 0.96513 1.21313 1.14325 1.23579 0.97077 0.93866 1.25892 0.97414 0.94509 0.99274 1.70060 1.40748 1.31594 1.15505 0.85385 0.78543 0.81161 0.74870 1.20999 1.16556 1.23562 1.88051 1.17759 1.43908 1.81442 0.93616 0.91448 0.90564 0.90567 0.91072 0.92462 0.88563 0.89984 0.91568 0.88545 0.91666 0.91300 0.89738 0.92034 0.93430 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.53 127.69 1.22 1.60 16 2 N -0.55 -16.93 5.66 -907.90 -5.14 -22.07 16 3 C 0.04 1.09 6.51 86.48 0.56 1.66 16 4 C -0.16 -5.10 5.36 31.38 0.17 -4.93 16 5 C 0.09 3.24 1.03 -10.31 -0.01 3.23 16 6 C 0.05 1.56 5.78 86.29 0.50 2.06 16 7 C -0.13 -3.55 4.59 30.55 0.14 -3.41 16 8 C -0.11 -3.30 5.80 30.74 0.18 -3.12 16 9 C -0.13 -5.31 5.34 30.68 0.16 -5.14 16 10 C 0.19 9.14 1.67 29.88 0.05 9.19 16 11 H 0.02 0.84 5.71 -2.39 -0.01 0.83 16 12 C -0.53 -31.68 9.38 25.60 0.24 -31.44 16 13 H 0.04 2.82 7.99 -2.91 -0.02 2.80 16 14 C 0.03 1.78 5.47 84.65 0.46 2.24 16 15 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 16 Si 0.97 51.15 26.18 68.60 1.80 52.95 16 17 H -0.28 -15.48 7.11 99.48 0.71 -14.77 16 18 H -0.24 -11.71 4.43 99.48 0.44 -11.27 16 19 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 20 O -0.39 -18.42 7.53 -148.98 -1.12 -19.54 16 21 H 0.05 0.82 7.97 -2.39 -0.02 0.80 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 26 H 0.06 2.22 4.48 -2.39 -0.01 2.21 16 27 H 0.10 2.45 6.73 -2.39 -0.02 2.43 16 28 H 0.08 1.96 7.60 -2.39 -0.02 1.94 16 29 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.86 6.93 -2.39 -0.02 1.84 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -71.84 269.32 0.28 -71.56 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.77 Total: 6.13 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.67 Total: -28.08 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -4.84 Total: -83.01 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.12 Total: -19.54 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.80 Total: 52.95 kcal Total: -71.84 0.28 -71.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686228259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.702 kcal (2) G-P(sol) polarization free energy of solvation -71.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds