Wall clock time and date at job start Mon Mar 30 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47180 * 2 1 4 4 C 1.48615 * 111.00031 * 307.42956 * 3 2 1 5 5 C 1.55143 * 103.34946 * 200.80274 * 4 3 2 6 6 C 1.53675 * 102.69543 * 36.63666 * 5 4 3 7 7 C 1.54028 * 110.46863 * 218.48073 * 6 5 4 8 8 C 1.55623 * 100.86894 * 203.74666 * 7 6 5 9 9 C 1.54469 * 102.27236 * 33.06634 * 8 7 6 10 10 H 1.09005 * 109.83163 * 98.32153 * 9 8 7 11 11 C 1.50696 * 109.83365 * 219.20780 * 9 8 7 12 12 H 1.07999 * 120.00319 * 359.80974 * 11 9 8 13 13 C 1.37885 * 119.99717 * 179.80357 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 O 1.42559 * 111.41810 * 100.45648 * 6 5 4 20 20 C 1.48163 * 111.00181 * 190.00111 * 3 2 1 21 21 H 1.08996 * 109.46913 * 60.00376 * 1 2 3 22 22 H 1.09003 * 109.46693 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46728 * 299.99650 * 1 2 3 24 24 H 1.09000 * 109.47408 * 240.00237 * 2 1 3 25 25 H 1.08998 * 109.47165 * 120.00347 * 2 1 3 26 26 H 1.09003 * 110.64910 * 319.26607 * 4 3 2 27 27 H 1.09006 * 110.64700 * 82.17115 * 4 3 2 28 28 H 1.09010 * 110.76169 * 278.33417 * 5 4 3 29 29 H 1.08997 * 110.76706 * 154.94419 * 5 4 3 30 30 H 1.09000 * 111.14711 * 321.58408 * 7 6 5 31 31 H 1.09009 * 111.14583 * 85.75823 * 7 6 5 32 32 H 1.09000 * 110.81417 * 274.90200 * 8 7 6 33 33 H 1.08997 * 110.91726 * 151.27894 * 8 7 6 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.08996 * 110.00758 * 26.37835 * 20 3 2 36 36 H 1.09002 * 110.00754 * 265.00808 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4022 2.1682 -1.1018 5 6 2.3837 3.3546 -1.2916 6 6 3.7536 2.7017 -1.0499 7 6 4.6766 3.6584 -0.2720 8 6 6.0759 3.1157 -0.6837 9 6 5.8275 2.6302 -2.1290 10 1 6.1622 3.3888 -2.8366 11 6 6.5714 1.3422 -2.3706 12 1 7.1669 0.9064 -1.5821 13 6 6.4917 0.7200 -3.5985 14 7 7.1406 -0.4044 -3.8093 15 14 5.4622 1.4742 -4.9626 16 1 4.0755 0.9487 -4.8843 17 1 5.4414 2.9510 -4.8083 18 1 6.0513 1.1223 -6.2795 19 8 4.4169 2.4133 -2.2785 20 6 3.4810 1.4315 -0.2402 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.3416 1.5704 -2.0112 27 1 0.4141 2.5261 -0.8121 28 1 2.1925 4.1358 -0.5556 29 1 2.3182 3.7521 -2.3044 30 1 4.5430 4.6887 -0.6020 31 1 4.5196 3.5689 0.8030 32 1 6.3738 2.2865 -0.0421 33 1 6.8223 3.9098 -0.6645 34 1 7.0842 -0.8422 -4.6730 35 1 3.7941 0.5541 -0.8059 36 1 4.0139 1.4731 0.7097 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686228595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:54 Heat of formation + Delta-G solvation = -42.211656 kcal Electronic energy + Delta-G solvation = -16662.437161 eV Core-core repulsion = 14146.348998 eV Total energy + Delta-G solvation = -2516.088163 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74067 -37.03440 -33.01675 -32.06608 -31.20742 -29.06524 -28.62540 -25.73195 -23.27408 -22.45642 -20.58037 -20.04435 -19.29301 -16.81112 -15.87035 -15.82955 -14.75296 -14.69176 -14.11847 -13.76881 -13.49613 -12.74597 -12.62391 -12.54992 -12.21096 -12.06381 -11.76853 -11.24738 -11.12143 -10.98675 -10.97563 -10.77285 -10.66420 -10.45217 -9.99790 -9.76137 -9.70875 -9.43874 -8.60686 -8.30673 -8.02769 -6.09816 -4.17883 3.40655 3.46475 3.56626 4.26401 4.49837 4.66848 4.99067 5.10511 5.26171 5.29751 5.37696 5.45010 5.57328 5.60819 5.64782 5.83999 5.90054 6.03295 6.05612 6.09977 6.19683 6.20672 6.29809 6.33587 6.40671 6.41653 6.52529 6.64000 6.77890 7.13088 7.30836 7.35725 7.64496 8.28817 8.46540 8.91404 9.54838 11.00896 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.010335 C = 0.009144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.590397 B = 2708.683757 C = 3061.488648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 N -0.518 5.518 4 C 0.037 3.963 5 C -0.121 4.121 6 C 0.104 3.896 7 C -0.142 4.142 8 C -0.135 4.135 9 C 0.165 3.835 10 H 0.042 0.958 11 C -0.528 4.528 12 H 0.076 0.924 13 C 0.082 3.918 14 N -0.895 5.895 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.265 1.265 18 H -0.299 1.299 19 O -0.379 6.379 20 C 0.028 3.972 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 5.540 6.618 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 N -0.244 5.244 4 C -0.091 4.091 5 C -0.159 4.159 6 C 0.064 3.936 7 C -0.180 4.180 8 C -0.172 4.172 9 C 0.110 3.890 10 H 0.060 0.940 11 C -0.565 4.565 12 H 0.094 0.906 13 C -0.121 4.121 14 N -0.533 5.533 15 Si 0.729 3.271 16 H -0.203 1.203 17 H -0.190 1.190 18 H -0.227 1.227 19 O -0.299 6.299 20 C -0.100 4.100 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.910 5.539 6.820 14.008 hybrid contribution -0.144 -0.215 -1.359 1.383 sum -11.055 5.324 5.461 13.430 Atomic orbital electron populations 1.21831 0.95320 1.01423 1.02133 1.22259 0.95466 0.90119 1.01099 1.64965 1.05187 1.11432 1.42780 1.23208 0.97928 0.94924 0.93040 1.22579 0.93889 0.97248 1.02141 1.22052 0.92485 0.92596 0.86514 1.23188 0.96148 0.98742 0.99906 1.23102 0.95439 1.00027 0.98658 1.20935 0.78674 0.96944 0.92483 0.94044 1.21304 1.28512 1.07236 0.99429 0.90613 1.25041 0.93926 0.94334 0.98843 1.69946 1.41837 1.17371 1.24136 0.86411 0.80551 0.80460 0.79643 1.20264 1.18998 1.22679 1.88379 1.22034 1.88994 1.30489 1.23255 0.87716 0.99242 0.99752 0.92729 0.92531 0.92115 0.94434 0.90873 0.93682 0.90619 0.90436 0.90491 0.91419 0.90888 0.90996 0.91861 0.92625 0.91616 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.57 37.16 0.36 -1.41 16 2 C 0.04 0.57 5.75 -3.82 -0.02 0.55 16 3 N -0.52 -8.42 5.41 -230.61 -1.25 -9.67 16 4 C 0.04 0.57 5.12 -1.74 -0.01 0.56 16 5 C -0.12 -1.94 6.35 -25.25 -0.16 -2.10 16 6 C 0.10 1.99 1.07 -89.69 -0.10 1.89 16 7 C -0.14 -2.40 5.79 -24.80 -0.14 -2.55 16 8 C -0.13 -2.65 6.45 -24.56 -0.16 -2.81 16 9 C 0.16 3.98 2.83 -27.11 -0.08 3.90 16 10 H 0.04 1.03 7.16 -51.93 -0.37 0.66 16 11 C -0.53 -15.02 9.33 -34.44 -0.32 -15.35 16 12 H 0.08 2.30 7.76 -52.49 -0.41 1.89 16 13 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 14 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 15 Si 0.90 23.45 26.29 -169.99 -4.47 18.98 16 16 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.27 -6.71 6.52 56.52 0.37 -6.34 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 19 O -0.38 -9.00 8.23 -35.23 -0.29 -9.29 16 20 C 0.03 0.53 6.08 -3.09 -0.02 0.51 16 21 H 0.05 0.64 6.79 -51.93 -0.35 0.29 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.61 7.82 -51.93 -0.41 0.21 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.76 7.98 -51.93 -0.41 0.34 16 27 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 28 H 0.08 1.09 7.87 -51.92 -0.41 0.68 16 29 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 30 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 31 H 0.07 1.10 7.70 -51.92 -0.40 0.70 16 32 H 0.07 1.46 7.66 -51.93 -0.40 1.06 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 36 H 0.08 1.39 7.45 -51.93 -0.39 1.00 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -30.83 278.74 -7.81 -38.63 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.03 Total: -1.50 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.75 Total: -14.46 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.47 Total: -36.57 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.29 Total: -9.29 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.47 Total: 18.98 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.83 -7.81 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686228595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.577 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds