Wall clock time and date at job start Mon Mar 30 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47180 * 2 1 4 4 C 1.48615 * 111.00031 * 307.42956 * 3 2 1 5 5 C 1.55143 * 103.34946 * 200.80274 * 4 3 2 6 6 C 1.53675 * 102.69543 * 36.63666 * 5 4 3 7 7 C 1.54028 * 110.46863 * 218.48073 * 6 5 4 8 8 C 1.55623 * 100.86894 * 203.74666 * 7 6 5 9 9 C 1.54469 * 102.27236 * 33.06634 * 8 7 6 10 10 H 1.09005 * 109.83163 * 98.32153 * 9 8 7 11 11 C 1.50696 * 109.83365 * 219.20780 * 9 8 7 12 12 H 1.07999 * 120.00319 * 359.80974 * 11 9 8 13 13 C 1.37885 * 119.99717 * 179.80357 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 O 1.42559 * 111.41810 * 100.45648 * 6 5 4 20 20 C 1.48163 * 111.00181 * 190.00111 * 3 2 1 21 21 H 1.08996 * 109.46913 * 60.00376 * 1 2 3 22 22 H 1.09003 * 109.46693 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46728 * 299.99650 * 1 2 3 24 24 H 1.09000 * 109.47408 * 240.00237 * 2 1 3 25 25 H 1.08998 * 109.47165 * 120.00347 * 2 1 3 26 26 H 1.09003 * 110.64910 * 319.26607 * 4 3 2 27 27 H 1.09006 * 110.64700 * 82.17115 * 4 3 2 28 28 H 1.09010 * 110.76169 * 278.33417 * 5 4 3 29 29 H 1.08997 * 110.76706 * 154.94419 * 5 4 3 30 30 H 1.09000 * 111.14711 * 321.58408 * 7 6 5 31 31 H 1.09009 * 111.14583 * 85.75823 * 7 6 5 32 32 H 1.09000 * 110.81417 * 274.90200 * 8 7 6 33 33 H 1.08997 * 110.91726 * 151.27894 * 8 7 6 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.08996 * 110.00758 * 26.37835 * 20 3 2 36 36 H 1.09002 * 110.00754 * 265.00808 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4022 2.1682 -1.1018 5 6 2.3837 3.3546 -1.2916 6 6 3.7536 2.7017 -1.0499 7 6 4.6766 3.6584 -0.2720 8 6 6.0759 3.1157 -0.6837 9 6 5.8275 2.6302 -2.1290 10 1 6.1622 3.3888 -2.8366 11 6 6.5714 1.3422 -2.3706 12 1 7.1669 0.9064 -1.5821 13 6 6.4917 0.7200 -3.5985 14 7 7.1406 -0.4044 -3.8093 15 14 5.4622 1.4742 -4.9626 16 1 4.0755 0.9487 -4.8843 17 1 5.4414 2.9510 -4.8083 18 1 6.0513 1.1223 -6.2795 19 8 4.4169 2.4133 -2.2785 20 6 3.4810 1.4315 -0.2402 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.3416 1.5704 -2.0112 27 1 0.4141 2.5261 -0.8121 28 1 2.1925 4.1358 -0.5556 29 1 2.3182 3.7521 -2.3044 30 1 4.5430 4.6887 -0.6020 31 1 4.5196 3.5689 0.8030 32 1 6.3738 2.2865 -0.0421 33 1 6.8223 3.9098 -0.6645 34 1 7.0842 -0.8422 -4.6730 35 1 3.7941 0.5541 -0.8059 36 1 4.0139 1.4731 0.7097 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686228595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:54 Heat of formation + Delta-G solvation = -64.127088 kcal Electronic energy + Delta-G solvation = -16663.387485 eV Core-core repulsion = 14146.348998 eV Total energy + Delta-G solvation = -2517.038487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24851 -38.51196 -34.90854 -33.72564 -32.81663 -30.40112 -30.21142 -27.45734 -24.70707 -23.89712 -22.22938 -21.42535 -20.84326 -18.97200 -17.32586 -17.26988 -16.63194 -16.06610 -15.68174 -15.14760 -15.03930 -14.66986 -14.32272 -14.02147 -13.60677 -13.54924 -13.04640 -12.90183 -12.55825 -12.49548 -12.39536 -12.23602 -12.18532 -11.91117 -11.76434 -11.44180 -11.33047 -11.25078 -10.86894 -10.10742 -9.45979 -8.38175 -6.48958 1.30014 1.37083 1.46594 2.33103 2.80579 3.02587 3.34936 3.67050 3.76299 3.98909 4.05981 4.17095 4.27893 4.35052 4.39954 4.54307 4.56681 4.62357 4.74997 4.82102 4.88599 4.94635 4.96381 5.00556 5.08203 5.13762 5.19883 5.24768 5.32606 5.49703 5.55064 5.82399 6.03757 6.14427 6.51200 6.73391 7.27516 8.76487 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.010335 C = 0.009144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.590397 B = 2708.683757 C = 3061.488648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 N -0.510 5.510 4 C 0.036 3.964 5 C -0.114 4.114 6 C 0.085 3.915 7 C -0.125 4.125 8 C -0.132 4.132 9 C 0.163 3.837 10 H 0.040 0.960 11 C -0.531 4.531 12 H 0.040 0.960 13 C 0.027 3.973 14 N -0.941 5.941 15 Si 0.961 3.039 16 H -0.284 1.284 17 H -0.250 1.250 18 H -0.292 1.292 19 O -0.402 6.402 20 C 0.032 3.968 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.266 0.734 35 H 0.019 0.981 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 7.902 7.519 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 N -0.235 5.235 4 C -0.091 4.091 5 C -0.151 4.151 6 C 0.045 3.955 7 C -0.163 4.163 8 C -0.170 4.170 9 C 0.107 3.893 10 H 0.057 0.943 11 C -0.569 4.569 12 H 0.058 0.942 13 C -0.173 4.173 14 N -0.581 5.581 15 Si 0.788 3.212 16 H -0.211 1.211 17 H -0.174 1.174 18 H -0.219 1.219 19 O -0.323 6.323 20 C -0.096 4.096 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.029 0.971 25 H 0.096 0.904 26 H 0.042 0.958 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.124 7.916 7.734 17.167 hybrid contribution 0.548 -1.014 -1.544 1.927 sum -12.575 6.902 6.190 15.623 Atomic orbital electron populations 1.21776 0.92530 1.02736 1.02756 1.22365 0.97784 0.89198 1.00090 1.65041 1.03448 1.12265 1.42728 1.23315 0.99410 0.94388 0.92030 1.22617 0.91561 0.97855 1.03115 1.22486 0.94345 0.93400 0.85280 1.23172 0.92818 0.99144 1.01138 1.23026 0.98188 1.00297 0.95466 1.20798 0.78809 0.94328 0.95349 0.94274 1.21642 1.28233 1.08747 0.98270 0.94214 1.25864 0.95205 0.94785 1.01408 1.70066 1.44040 1.19079 1.24936 0.85454 0.78269 0.80409 0.77088 1.21085 1.17357 1.21862 1.88282 1.21432 1.89489 1.33082 1.23152 0.89682 0.97488 0.99301 0.92583 0.91036 0.90830 0.97134 0.90372 0.95773 0.87329 0.87191 0.90648 0.88921 0.88349 0.92511 0.89587 0.92474 0.96296 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.57 71.98 0.69 -2.29 16 2 C 0.03 0.97 5.75 86.30 0.50 1.47 16 3 N -0.51 -15.66 5.41 -883.50 -4.78 -20.43 16 4 C 0.04 1.02 5.12 86.71 0.44 1.47 16 5 C -0.11 -3.27 6.35 31.56 0.20 -3.07 16 6 C 0.08 3.07 1.07 -10.19 -0.01 3.06 16 7 C -0.13 -3.80 5.79 31.85 0.18 -3.61 16 8 C -0.13 -5.00 6.45 32.00 0.21 -4.80 16 9 C 0.16 7.82 2.83 30.35 0.09 7.91 16 10 H 0.04 1.90 7.16 -2.38 -0.02 1.89 16 11 C -0.53 -31.28 9.33 25.60 0.24 -31.04 16 12 H 0.04 2.55 7.76 -2.91 -0.02 2.52 16 13 C 0.03 1.61 5.47 84.66 0.46 2.07 16 14 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 15 Si 0.96 49.21 26.29 68.60 1.80 51.02 16 16 H -0.28 -14.79 7.11 99.48 0.71 -14.09 16 17 H -0.25 -12.03 6.52 99.48 0.65 -11.38 16 18 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 19 O -0.40 -18.84 8.23 -148.98 -1.23 -20.06 16 20 C 0.03 1.19 6.08 86.08 0.52 1.72 16 21 H 0.06 1.17 6.79 -2.39 -0.02 1.16 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.01 0.35 7.82 -2.39 -0.02 0.33 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.02 0.78 7.98 -2.39 -0.02 0.76 16 27 H 0.11 2.39 7.68 -2.38 -0.02 2.37 16 28 H 0.11 2.48 7.87 -2.38 -0.02 2.46 16 29 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 30 H 0.09 2.40 8.06 -2.39 -0.02 2.38 16 31 H 0.10 2.53 7.70 -2.38 -0.02 2.51 16 32 H 0.06 2.29 7.66 -2.39 -0.02 2.28 16 33 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.02 0.86 7.44 -2.39 -0.02 0.84 16 36 H 0.08 2.95 7.45 -2.39 -0.02 2.94 16 Total: -1.00 -68.98 278.74 0.59 -68.39 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.97 Total: 8.33 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.52 Total: -27.12 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -4.48 Total: -80.56 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.23 Total: -20.06 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.80 Total: 51.02 kcal Total: -68.98 0.59 -68.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686228595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.262 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds