Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47349 * 2 1 4 4 C 1.48640 * 110.99894 * 290.13064 * 3 2 1 5 5 C 1.54623 * 104.61924 * 201.43827 * 4 3 2 6 6 C 1.53343 * 104.71170 * 23.72797 * 5 4 3 7 7 C 1.54563 * 110.64648 * 119.64219 * 6 5 4 8 8 C 1.55474 * 100.56994 * 86.26071 * 7 6 5 9 9 C 1.54460 * 102.52662 * 33.16563 * 8 7 6 10 10 H 1.08995 * 109.84258 * 98.05462 * 9 8 7 11 11 C 1.50704 * 109.83729 * 219.04813 * 9 8 7 12 12 H 1.08005 * 119.99664 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00214 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99610 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 119.99977 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46892 * 90.00171 * 15 13 11 17 17 H 1.48499 * 109.46708 * 209.99853 * 15 13 11 18 18 H 1.48498 * 109.47089 * 330.00220 * 15 13 11 19 19 O 1.42541 * 111.63995 * 237.99499 * 6 5 4 20 20 C 1.48777 * 110.99903 * 174.52792 * 3 2 1 21 21 H 1.09008 * 109.47234 * 59.99600 * 1 2 3 22 22 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47052 * 299.99671 * 1 2 3 24 24 H 1.08998 * 109.46627 * 240.00113 * 2 1 3 25 25 H 1.08998 * 109.47187 * 120.00343 * 2 1 3 26 26 H 1.08998 * 110.41225 * 82.65452 * 4 3 2 27 27 H 1.09004 * 110.40958 * 320.22210 * 4 3 2 28 28 H 1.09001 * 110.38947 * 264.92478 * 5 4 3 29 29 H 1.08995 * 110.39054 * 142.54164 * 5 4 3 30 30 H 1.08999 * 111.34807 * 328.42002 * 7 6 5 31 31 H 1.09003 * 111.17500 * 204.02980 * 7 6 5 32 32 H 1.09002 * 110.83114 * 274.84993 * 8 7 6 33 33 H 1.09000 * 110.82839 * 151.47716 * 8 7 6 34 34 H 0.97001 * 119.99273 * 179.97438 * 14 13 11 35 35 H 1.08993 * 110.44998 * 39.52456 * 20 3 2 36 36 H 1.09004 * 110.44709 * 276.97996 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7470 2.0464 -1.3029 5 6 2.7549 3.2174 -1.3646 6 6 3.8955 2.7992 -0.4289 7 6 5.2297 2.7064 -1.2036 8 6 5.7116 4.1822 -1.1195 9 6 5.1765 4.6314 0.2581 10 1 5.9690 4.5624 1.0032 11 6 4.6735 6.0495 0.1738 12 1 4.7255 6.5861 -0.7621 13 6 4.1480 6.6622 1.2916 14 7 3.7095 7.9000 1.2180 15 14 4.0588 5.7343 2.9103 16 1 5.3087 5.9599 3.6797 17 1 2.8981 6.2227 3.6974 18 1 3.8986 4.2828 2.6406 19 8 4.0984 3.7525 0.6112 20 6 3.5010 1.4267 0.1325 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.7246 2.4231 -1.3314 27 1 1.9203 1.3521 -2.1252 28 1 2.2904 4.1373 -1.0095 29 1 3.1256 3.3461 -2.3815 30 1 5.0676 2.4040 -2.2382 31 1 5.9289 2.0354 -0.7046 32 1 5.2731 4.7793 -1.9191 33 1 6.7998 4.2369 -1.1493 34 1 3.3395 8.3308 2.0043 35 1 3.9584 0.6297 -0.4537 36 1 3.7921 1.3456 1.1798 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686228598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -39.398514 kcal Electronic energy + Delta-G solvation = -16564.497797 eV Core-core repulsion = 14048.531621 eV Total energy + Delta-G solvation = -2515.966176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67402 -37.05846 -32.94286 -32.04924 -31.11943 -28.96443 -28.78652 -25.79441 -22.96090 -22.58896 -20.76958 -20.02865 -19.23054 -16.72099 -16.02057 -15.65529 -14.82870 -14.50039 -14.18085 -14.09199 -13.12287 -12.94328 -12.56810 -12.42102 -12.37045 -11.91757 -11.81523 -11.39296 -11.10231 -11.02350 -10.98764 -10.72846 -10.63822 -10.14059 -9.99179 -9.82643 -9.64852 -9.23483 -8.46872 -8.27338 -8.04851 -6.02480 -4.10143 3.46247 3.52460 3.80610 4.17514 4.63184 4.69805 4.97425 5.05575 5.24611 5.34623 5.39201 5.43430 5.49551 5.51339 5.61667 5.74009 5.80398 5.84979 5.99800 6.05418 6.12734 6.20498 6.26243 6.31837 6.43674 6.48628 6.57227 6.67731 6.89789 7.11271 7.28412 7.34012 7.71430 8.38875 8.54086 8.98638 9.63477 11.08292 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.009578 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.359411 B = 2922.723483 C = 3316.340252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 N -0.507 5.507 4 C 0.036 3.964 5 C -0.133 4.133 6 C 0.107 3.893 7 C -0.147 4.147 8 C -0.132 4.132 9 C 0.167 3.833 10 H 0.036 0.964 11 C -0.530 4.530 12 H 0.073 0.927 13 C 0.084 3.916 14 N -0.896 5.896 15 Si 0.869 3.131 16 H -0.287 1.287 17 H -0.293 1.293 18 H -0.221 1.221 19 O -0.357 6.357 20 C 0.040 3.960 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.263 0.737 35 H 0.045 0.955 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -15.127 -4.444 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 N -0.231 5.231 4 C -0.092 4.092 5 C -0.171 4.171 6 C 0.066 3.934 7 C -0.185 4.185 8 C -0.170 4.170 9 C 0.111 3.889 10 H 0.053 0.947 11 C -0.567 4.567 12 H 0.091 0.909 13 C -0.119 4.119 14 N -0.534 5.534 15 Si 0.696 3.304 16 H -0.214 1.214 17 H -0.219 1.219 18 H -0.144 1.144 19 O -0.277 6.277 20 C -0.088 4.088 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.244 -14.720 -3.717 15.347 hybrid contribution 0.380 -0.692 -0.036 0.790 sum -1.864 -15.412 -3.753 15.972 Atomic orbital electron populations 1.21735 0.94970 1.01004 1.02632 1.22227 0.96288 0.90039 1.00339 1.65433 1.11769 1.14725 1.31218 1.23153 1.00365 0.95966 0.89704 1.22699 0.96045 0.99213 0.99140 1.22072 0.93320 0.89202 0.88845 1.23307 0.97123 0.98381 0.99713 1.23040 1.00020 0.93737 1.00218 1.20791 0.86440 0.90286 0.91347 0.94676 1.21256 1.42628 0.94728 0.98133 0.90856 1.25009 0.93118 0.94234 0.99569 1.69944 1.40586 1.12520 1.30328 0.86967 0.76871 0.84086 0.82459 1.21416 1.21895 1.14354 1.88783 1.55483 1.43849 1.39616 1.23133 0.87748 0.95955 1.01941 0.92807 0.92730 0.91787 0.95210 0.91080 0.90478 0.94613 0.89046 0.91594 0.91412 0.91536 0.91016 0.92041 0.92712 0.93703 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.97 37.16 0.37 -1.27 16 2 C 0.04 0.50 5.53 -3.82 -0.02 0.48 16 3 N -0.51 -8.22 5.37 -230.15 -1.24 -9.46 16 4 C 0.04 0.55 5.76 -2.01 -0.01 0.54 16 5 C -0.13 -2.40 6.34 -25.70 -0.16 -2.56 16 6 C 0.11 2.03 1.14 -89.39 -0.10 1.92 16 7 C -0.15 -2.45 5.83 -24.60 -0.14 -2.59 16 8 C -0.13 -2.59 6.41 -24.65 -0.16 -2.75 16 9 C 0.17 4.02 2.84 -27.12 -0.08 3.94 16 10 H 0.04 0.86 7.53 -51.93 -0.39 0.47 16 11 C -0.53 -15.17 9.33 -34.44 -0.32 -15.49 16 12 H 0.07 2.24 7.76 -52.48 -0.41 1.83 16 13 C 0.08 2.51 5.47 -17.82 -0.10 2.41 16 14 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 15 Si 0.87 22.66 27.01 -169.99 -4.59 18.07 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.22 -5.67 5.40 56.52 0.31 -5.37 16 19 O -0.36 -8.52 7.40 -35.23 -0.26 -8.78 16 20 C 0.04 0.67 5.80 -2.55 -0.01 0.65 16 21 H 0.05 0.60 7.27 -51.92 -0.38 0.22 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.35 7.88 -51.93 -0.41 -0.06 16 25 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.08 1.14 7.79 -51.93 -0.40 0.74 16 27 H 0.04 0.48 7.81 -51.93 -0.41 0.08 16 28 H 0.09 1.95 8.02 -51.93 -0.42 1.54 16 29 H 0.07 1.08 7.47 -51.93 -0.39 0.69 16 30 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 31 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.04 0.64 7.72 -51.93 -0.40 0.24 16 36 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -31.49 279.41 -8.00 -39.49 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.16 Total: -1.58 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.74 Total: -14.71 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.46 Total: -36.70 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.26 Total: -8.78 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.59 Total: 18.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.49 -8.00 -39.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686228598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.091 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds