Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47349 * 2 1 4 4 C 1.48640 * 110.99894 * 290.13064 * 3 2 1 5 5 C 1.54623 * 104.61924 * 201.43827 * 4 3 2 6 6 C 1.53343 * 104.71170 * 23.72797 * 5 4 3 7 7 C 1.54563 * 110.64648 * 119.64219 * 6 5 4 8 8 C 1.55474 * 100.56994 * 86.26071 * 7 6 5 9 9 C 1.54460 * 102.52662 * 33.16563 * 8 7 6 10 10 H 1.08995 * 109.84258 * 98.05462 * 9 8 7 11 11 C 1.50704 * 109.83729 * 219.04813 * 9 8 7 12 12 H 1.08005 * 119.99664 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00214 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99610 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 119.99977 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46892 * 90.00171 * 15 13 11 17 17 H 1.48499 * 109.46708 * 209.99853 * 15 13 11 18 18 H 1.48498 * 109.47089 * 330.00220 * 15 13 11 19 19 O 1.42541 * 111.63995 * 237.99499 * 6 5 4 20 20 C 1.48777 * 110.99903 * 174.52792 * 3 2 1 21 21 H 1.09008 * 109.47234 * 59.99600 * 1 2 3 22 22 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47052 * 299.99671 * 1 2 3 24 24 H 1.08998 * 109.46627 * 240.00113 * 2 1 3 25 25 H 1.08998 * 109.47187 * 120.00343 * 2 1 3 26 26 H 1.08998 * 110.41225 * 82.65452 * 4 3 2 27 27 H 1.09004 * 110.40958 * 320.22210 * 4 3 2 28 28 H 1.09001 * 110.38947 * 264.92478 * 5 4 3 29 29 H 1.08995 * 110.39054 * 142.54164 * 5 4 3 30 30 H 1.08999 * 111.34807 * 328.42002 * 7 6 5 31 31 H 1.09003 * 111.17500 * 204.02980 * 7 6 5 32 32 H 1.09002 * 110.83114 * 274.84993 * 8 7 6 33 33 H 1.09000 * 110.82839 * 151.47716 * 8 7 6 34 34 H 0.97001 * 119.99273 * 179.97438 * 14 13 11 35 35 H 1.08993 * 110.44998 * 39.52456 * 20 3 2 36 36 H 1.09004 * 110.44709 * 276.97996 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7470 2.0464 -1.3029 5 6 2.7549 3.2174 -1.3646 6 6 3.8955 2.7992 -0.4289 7 6 5.2297 2.7064 -1.2036 8 6 5.7116 4.1822 -1.1195 9 6 5.1765 4.6314 0.2581 10 1 5.9690 4.5624 1.0032 11 6 4.6735 6.0495 0.1738 12 1 4.7255 6.5861 -0.7621 13 6 4.1480 6.6622 1.2916 14 7 3.7095 7.9000 1.2180 15 14 4.0588 5.7343 2.9103 16 1 5.3087 5.9599 3.6797 17 1 2.8981 6.2227 3.6974 18 1 3.8986 4.2828 2.6406 19 8 4.0984 3.7525 0.6112 20 6 3.5010 1.4267 0.1325 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.7246 2.4231 -1.3314 27 1 1.9203 1.3521 -2.1252 28 1 2.2904 4.1373 -1.0095 29 1 3.1256 3.3461 -2.3815 30 1 5.0676 2.4040 -2.2382 31 1 5.9289 2.0354 -0.7046 32 1 5.2731 4.7793 -1.9191 33 1 6.7998 4.2369 -1.1493 34 1 3.3395 8.3308 2.0043 35 1 3.9584 0.6297 -0.4537 36 1 3.7921 1.3456 1.1798 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686228598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -61.688664 kcal Electronic energy + Delta-G solvation = -16565.464370 eV Core-core repulsion = 14048.531621 eV Total energy + Delta-G solvation = -2516.932749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13192 -38.46307 -34.81069 -33.66697 -32.68982 -30.48791 -30.07795 -27.50276 -24.40289 -23.89944 -22.22891 -21.49408 -20.72489 -18.88830 -17.36303 -17.12887 -16.50298 -15.97219 -15.52632 -15.43004 -14.82929 -14.50063 -14.36171 -13.76299 -13.66874 -13.41766 -13.05103 -12.84545 -12.61531 -12.54787 -12.31780 -12.22493 -12.06913 -11.74166 -11.62527 -11.48263 -11.25888 -11.15783 -10.69751 -9.95924 -9.33099 -8.32389 -6.42621 1.35932 1.40159 1.71234 2.45022 2.93742 3.06451 3.41132 3.70566 3.79919 4.01004 4.15040 4.21772 4.30473 4.31830 4.44709 4.55206 4.62115 4.66189 4.78297 4.83800 4.88377 4.94569 4.97047 5.04779 5.10330 5.15060 5.17918 5.35598 5.45306 5.54992 5.60276 5.92057 6.19290 6.21332 6.58818 6.83887 7.35097 8.82162 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.009578 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.359411 B = 2922.723483 C = 3316.340252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.536 5.536 4 C 0.045 3.955 5 C -0.134 4.134 6 C 0.087 3.913 7 C -0.130 4.130 8 C -0.130 4.130 9 C 0.164 3.836 10 H 0.035 0.965 11 C -0.532 4.532 12 H 0.036 0.964 13 C 0.026 3.974 14 N -0.944 5.944 15 Si 0.934 3.066 16 H -0.276 1.276 17 H -0.297 1.297 18 H -0.215 1.215 19 O -0.384 6.384 20 C 0.048 3.952 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -18.546 -4.919 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 N -0.261 5.261 4 C -0.082 4.082 5 C -0.172 4.172 6 C 0.047 3.953 7 C -0.167 4.167 8 C -0.168 4.168 9 C 0.108 3.892 10 H 0.053 0.947 11 C -0.570 4.570 12 H 0.055 0.945 13 C -0.172 4.172 14 N -0.584 5.584 15 Si 0.759 3.241 16 H -0.202 1.202 17 H -0.224 1.224 18 H -0.137 1.137 19 O -0.304 6.304 20 C -0.080 4.080 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.769 -18.162 -4.205 18.726 hybrid contribution 0.202 0.381 0.019 0.432 sum -1.566 -17.781 -4.186 18.334 Atomic orbital electron populations 1.21722 0.94193 1.02325 1.01812 1.22313 0.96910 0.88215 1.01425 1.65395 1.11679 1.17168 1.31859 1.23071 0.99336 0.95269 0.90534 1.22646 0.96624 0.98355 0.99610 1.22505 0.94896 0.89472 0.88455 1.23282 0.95704 0.96303 1.01441 1.22958 1.01160 0.95822 0.96881 1.20661 0.86376 0.88025 0.94090 0.94720 1.21613 1.41618 0.97311 0.96410 0.94542 1.25867 0.93181 0.94950 1.03225 1.70075 1.42731 1.14292 1.31335 0.85959 0.76922 0.82890 0.78318 1.20179 1.22421 1.13739 1.88667 1.55300 1.44838 1.41619 1.23042 0.88353 0.95015 1.01584 0.92910 0.90343 0.93346 0.93385 0.90564 0.90667 0.91733 0.93813 0.90054 0.88369 0.89231 0.92514 0.89885 0.92680 0.90424 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.97 71.98 0.72 -2.09 16 2 C 0.04 0.86 5.53 86.30 0.48 1.33 16 3 N -0.54 -15.96 5.37 -882.07 -4.74 -20.69 16 4 C 0.05 1.28 5.76 86.52 0.50 1.78 16 5 C -0.13 -4.70 6.34 31.26 0.20 -4.50 16 6 C 0.09 3.11 1.14 -10.00 -0.01 3.10 16 7 C -0.13 -3.82 5.83 31.98 0.19 -3.64 16 8 C -0.13 -4.90 6.41 31.94 0.20 -4.69 16 9 C 0.16 7.87 2.84 30.35 0.09 7.96 16 10 H 0.04 1.67 7.53 -2.39 -0.02 1.65 16 11 C -0.53 -31.43 9.33 25.60 0.24 -31.19 16 12 H 0.04 2.35 7.76 -2.91 -0.02 2.33 16 13 C 0.03 1.62 5.47 84.65 0.46 2.08 16 14 N -0.94 -61.35 13.96 21.45 0.30 -61.05 16 15 Si 0.93 48.01 27.01 68.60 1.85 49.86 16 16 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 18 H -0.21 -10.74 5.40 99.48 0.54 -10.21 16 19 O -0.38 -18.04 7.40 -148.98 -1.10 -19.14 16 20 C 0.05 1.43 5.80 86.09 0.50 1.93 16 21 H 0.05 1.04 7.27 -2.38 -0.02 1.02 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 0.89 7.88 -2.39 -0.02 0.88 16 25 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 26 H 0.07 2.13 7.79 -2.39 -0.02 2.11 16 27 H 0.06 1.46 7.81 -2.39 -0.02 1.44 16 28 H 0.04 1.92 8.02 -2.39 -0.02 1.91 16 29 H 0.08 2.51 7.47 -2.39 -0.02 2.50 16 30 H 0.10 2.34 7.71 -2.39 -0.02 2.32 16 31 H 0.09 2.27 8.08 -2.39 -0.02 2.26 16 32 H 0.06 2.27 7.66 -2.39 -0.02 2.25 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.08 1.81 7.72 -2.39 -0.02 1.79 16 36 H 0.07 2.38 8.08 -2.38 -0.02 2.36 16 Total: -1.00 -70.63 279.41 0.73 -69.90 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.86 Total: 9.05 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 3.56 Total: -27.93 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -4.44 Total: -81.75 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.10 Total: -19.14 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.85 Total: 49.86 kcal Total: -70.63 0.73 -69.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686228598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.210 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds