Wall clock time and date at job start Mon Mar 30 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46853 * 111.00100 * 2 1 4 4 C 1.53039 * 109.62709 * 186.21287 * 3 2 1 5 5 C 1.53227 * 109.20388 * 300.37988 * 4 3 2 6 6 C 1.52560 * 109.19451 * 56.81146 * 5 4 3 7 7 C 1.53988 * 110.12681 * 181.65578 * 6 5 4 8 8 C 1.54614 * 103.92813 * 217.72355 * 7 6 5 9 9 C 1.54506 * 104.06056 * 359.67578 * 8 7 6 10 10 H 1.08992 * 110.35787 * 264.96084 * 9 8 7 11 11 C 1.50704 * 110.35492 * 142.66546 * 9 8 7 12 12 H 1.07997 * 119.99989 * 359.97438 * 11 9 8 13 13 C 1.37884 * 119.99758 * 180.02562 * 11 9 8 14 14 N 1.31518 * 119.99777 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99883 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47264 * 89.99723 * 15 13 11 17 17 H 1.48494 * 109.46987 * 209.99836 * 15 13 11 18 18 H 1.48503 * 109.46882 * 329.99885 * 15 13 11 19 19 O 1.43885 * 110.17911 * 65.76539 * 6 5 4 20 20 C 1.46956 * 111.00119 * 124.13749 * 2 1 3 21 21 H 1.08999 * 109.47339 * 295.86042 * 1 2 3 22 22 H 1.08995 * 109.46751 * 55.86084 * 1 2 3 23 23 H 1.08997 * 109.46858 * 175.86313 * 1 2 3 24 24 H 1.08996 * 109.44578 * 306.26598 * 3 2 1 25 25 H 1.09005 * 109.44236 * 66.17027 * 3 2 1 26 26 H 1.09004 * 109.52103 * 180.46300 * 4 3 2 27 27 H 1.08999 * 109.56397 * 60.32859 * 4 3 2 28 28 H 1.09001 * 109.51542 * 296.89609 * 5 4 3 29 29 H 1.09007 * 109.56307 * 176.75726 * 5 4 3 30 30 H 1.08994 * 110.53976 * 336.34169 * 7 6 5 31 31 H 1.09000 * 110.53278 * 99.11680 * 7 6 5 32 32 H 1.09005 * 110.50871 * 118.32060 * 8 7 6 33 33 H 1.09000 * 110.51074 * 240.88882 * 8 7 6 34 34 H 0.97001 * 119.99136 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.45193 * 295.15989 * 20 2 1 36 36 H 1.09002 * 109.44766 * 55.10968 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5173 1.3373 -0.1560 5 6 4.1258 0.5468 1.0070 6 6 3.5150 -0.8509 1.0373 7 6 4.0817 -1.6512 2.2246 8 6 4.2331 -3.0857 1.6681 9 6 3.7301 -2.9782 0.2112 10 1 2.6787 -3.2591 0.1514 11 6 4.5595 -3.8508 -0.6955 12 1 5.3726 -4.4334 -0.2885 13 6 4.2807 -3.9043 -2.0448 14 7 3.2908 -3.1943 -2.5404 15 14 5.3082 -4.9864 -3.1685 16 1 4.7019 -6.3400 -3.2423 17 1 5.3517 -4.3887 -4.5271 18 1 6.6879 -5.0908 -2.6292 19 8 3.8993 -1.5861 -0.1383 20 6 1.9957 -0.7699 1.1355 21 1 -0.3634 0.4482 0.9247 22 1 -0.3633 0.5767 -0.8506 23 1 -0.3633 -1.0250 -0.0741 24 1 1.5577 1.9276 -0.8287 25 1 1.7376 1.8585 0.9403 26 1 3.9069 2.3553 -0.1475 27 1 3.7770 0.8560 -1.0988 28 1 3.9125 1.0579 1.9458 29 1 5.2047 0.4699 0.8712 30 1 5.0508 -1.2536 2.5260 31 1 3.3845 -1.6377 3.0624 32 1 5.2781 -3.3954 1.6896 33 1 3.6175 -3.7828 2.2365 34 1 3.0950 -3.2318 -3.4897 35 1 1.7178 -0.2780 2.0677 36 1 1.5768 -1.7761 1.1173 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686233788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:12 Heat of formation + Delta-G solvation = -45.668614 kcal Electronic energy + Delta-G solvation = -16847.168608 eV Core-core repulsion = 14330.930540 eV Total energy + Delta-G solvation = -2516.238068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.43142 -36.52218 -32.97029 -32.11522 -30.87536 -29.49336 -26.60897 -26.10484 -23.47543 -22.39177 -20.92694 -19.75785 -18.57462 -16.54027 -15.46055 -14.89007 -14.62940 -14.36164 -14.07417 -14.00101 -13.55441 -12.72509 -12.41848 -12.16560 -12.08058 -11.83807 -11.50577 -11.34125 -11.14350 -10.84966 -10.54489 -10.43154 -10.40076 -10.11470 -9.92484 -9.53102 -9.46907 -8.97277 -8.48170 -7.90733 -7.62887 -5.88151 -4.01783 3.36508 3.43340 3.46605 4.38297 4.50651 5.08679 5.26804 5.35875 5.45390 5.54874 5.63525 5.72523 5.75102 5.81198 5.91236 5.94368 6.02616 6.08893 6.14535 6.23381 6.30699 6.39069 6.45484 6.63794 6.75325 6.77554 6.88409 6.94208 7.06633 7.62126 7.63537 7.67136 7.99284 8.36273 8.71896 9.10433 9.67640 11.17846 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.009780 C = 0.008791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.685071 B = 2862.309905 C = 3184.191798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.520 5.520 3 C 0.062 3.938 4 C -0.113 4.113 5 C -0.103 4.103 6 C 0.097 3.903 7 C -0.145 4.145 8 C -0.148 4.148 9 C 0.208 3.792 10 H 0.025 0.975 11 C -0.532 4.532 12 H 0.060 0.940 13 C 0.078 3.922 14 N -0.852 5.852 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.323 6.323 20 C 0.054 3.946 21 H 0.013 0.987 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.259 0.741 35 H 0.020 0.980 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 7.399 7.172 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.243 5.243 3 C -0.066 4.066 4 C -0.151 4.151 5 C -0.141 4.141 6 C 0.055 3.945 7 C -0.183 4.183 8 C -0.186 4.186 9 C 0.152 3.848 10 H 0.043 0.957 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.128 4.128 14 N -0.488 5.488 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.241 6.241 20 C -0.075 4.075 21 H 0.031 0.969 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.702 7.310 6.362 10.060 hybrid contribution 0.089 -0.262 0.341 0.439 sum -2.612 7.047 6.703 10.071 Atomic orbital electron populations 1.22308 0.88198 1.02083 0.99176 1.61710 1.06272 1.12665 1.43679 1.22029 0.96242 0.89395 0.98950 1.21522 0.93897 0.98787 1.00887 1.21474 1.00458 0.94603 0.97527 1.21684 0.91388 0.92703 0.88731 1.22900 1.00273 0.97452 0.97722 1.23089 1.01473 0.94311 0.99741 1.20481 0.95678 0.80415 0.88205 0.95727 1.21003 1.17536 1.25478 0.92971 0.92163 1.25075 0.94724 0.94765 0.98242 1.70083 1.27716 1.38085 1.12910 0.86696 0.80963 0.80549 0.80316 1.20698 1.21174 1.19879 1.89494 1.85798 1.18498 1.30329 1.22439 0.96906 0.98301 0.89818 0.96899 0.91867 0.91453 0.91472 0.96264 0.92614 0.89681 0.92726 0.91427 0.91850 0.92549 0.91920 0.93017 0.93101 0.96159 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.60 60.06 0.58 1.06 16 2 N -0.52 -9.92 4.88 -243.23 -1.19 -11.11 16 3 C 0.06 1.02 5.45 -3.83 -0.02 1.00 16 4 C -0.11 -1.94 5.99 -26.59 -0.16 -2.10 16 5 C -0.10 -1.81 4.90 -26.84 -0.13 -1.94 16 6 C 0.10 1.97 0.72 -90.60 -0.07 1.90 16 7 C -0.15 -2.69 6.17 -25.37 -0.16 -2.85 16 8 C -0.15 -3.18 6.62 -25.09 -0.17 -3.34 16 9 C 0.21 5.47 2.64 -27.09 -0.07 5.39 16 10 H 0.03 0.71 7.27 -51.93 -0.38 0.33 16 11 C -0.53 -15.30 8.77 -34.44 -0.30 -15.60 16 12 H 0.06 1.69 7.56 -52.49 -0.40 1.29 16 13 C 0.08 2.27 5.43 -17.82 -0.10 2.17 16 14 N -0.85 -25.78 13.06 55.43 0.72 -25.05 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 O -0.32 -8.42 10.05 -35.23 -0.35 -8.78 16 20 C 0.05 1.03 4.15 -4.06 -0.02 1.01 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 22 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.75 7.94 -51.93 -0.41 1.34 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 31 H 0.06 0.91 7.84 -51.93 -0.41 0.51 16 32 H 0.06 1.35 7.70 -51.93 -0.40 0.95 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -31.21 282.02 -8.32 -39.52 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.12 Total: -2.34 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.61 Total: -13.29 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.46 Total: -36.16 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.35 Total: -8.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.21 -8.32 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686233788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.147 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds